Wall clock time and date at job start Mon Mar 30 2020 01:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99963 * 2 1 4 4 H 1.48491 * 109.47047 * 239.99725 * 3 2 1 5 5 H 1.48498 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46841 * 119.99572 * 3 2 1 7 7 C 1.38800 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00169 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00072 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47467 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.47743 * 125.81887 * 359.90665 * 13 11 10 15 15 C 1.54909 * 104.83995 * 155.82587 * 14 13 11 16 16 C 1.55159 * 101.57990 * 37.09908 * 15 14 13 17 17 O 1.42898 * 110.87348 * 82.92981 * 16 15 14 18 18 C 1.53006 * 110.71889 * 206.13300 * 16 15 14 19 19 C 1.53000 * 117.49402 * 243.72095 * 18 16 15 20 20 C 1.53000 * 117.49546 * 175.06404 * 18 16 15 21 21 C 1.47020 * 125.64983 * 179.97438 * 13 11 10 22 22 H 0.96999 * 120.00373 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47228 * 60.00102 * 10 9 7 24 24 H 1.08999 * 109.46922 * 300.00118 * 10 9 7 25 25 H 1.09003 * 110.29227 * 37.02448 * 14 13 11 26 26 H 1.09001 * 110.43832 * 274.70711 * 14 13 11 27 27 H 1.08994 * 111.00889 * 279.01887 * 15 14 13 28 28 H 1.09006 * 111.00238 * 155.16698 * 15 14 13 29 29 H 0.96700 * 113.99955 * 305.68265 * 17 16 15 30 30 H 1.08994 * 115.54955 * 29.39095 * 18 16 15 31 31 H 1.08995 * 117.50280 * 359.97438 * 19 18 16 32 32 H 1.09001 * 117.49392 * 145.02259 * 19 18 16 33 33 H 1.09006 * 117.49554 * 214.97753 * 20 18 16 34 34 H 1.08997 * 117.50064 * 359.97438 * 20 18 16 35 35 H 1.09002 * 109.88367 * 61.60808 * 21 13 11 36 36 H 1.09000 * 109.88319 * 300.59426 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0007 14 6 4.3185 -6.2491 -0.0028 15 6 4.8023 -7.5868 0.6104 16 6 3.7710 -8.5882 0.0264 17 8 4.1430 -8.9906 -1.2933 18 6 3.6222 -9.8065 0.9399 19 6 4.0399 -11.1666 0.3772 20 6 2.5568 -10.8406 0.5704 21 6 2.4665 -7.7640 -0.0009 22 1 -0.4851 0.8400 -0.0004 23 1 3.1244 -3.7314 0.8906 24 1 3.1244 -3.7313 -0.8894 25 1 4.6447 -5.4101 0.6119 26 1 4.6916 -6.1418 -1.0214 27 1 4.7479 -7.5601 1.6987 28 1 5.8120 -7.8270 0.2770 29 1 4.2868 -8.2541 -1.9032 30 1 3.8004 -9.6241 1.9996 31 1 4.4203 -11.1935 -0.6439 32 1 4.4925 -11.8790 1.0669 33 1 2.0343 -11.3388 1.3871 34 1 1.9617 -10.6528 -0.3232 35 1 1.8998 -7.9970 -0.9024 36 1 1.8676 -7.9885 0.8817 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331783848.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:55 Heat of formation + Delta-G solvation = -56.416824 kcal Electronic energy + Delta-G solvation = -18496.086924 eV Core-core repulsion = 15493.400552 eV Total energy + Delta-G solvation = -3002.686372 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.44994 -38.47284 -36.31136 -35.06218 -32.44753 -31.09500 -29.77345 -28.14093 -25.52361 -24.16633 -22.49343 -22.30596 -20.29437 -19.38258 -17.89112 -17.09010 -16.62776 -16.25214 -15.52496 -15.06021 -14.95018 -14.81852 -14.25997 -13.89667 -13.51212 -13.04919 -12.76250 -12.64014 -12.43510 -12.37143 -11.83684 -11.71458 -11.62873 -11.28685 -11.06063 -11.05148 -10.87642 -10.79051 -10.42041 -9.95958 -9.83782 -9.43420 -9.07602 -8.58215 -8.26034 -6.52592 -6.23008 -3.94253 2.83550 3.02103 3.22312 3.23909 3.27914 3.43893 3.56376 3.87030 4.18383 4.23570 4.27404 4.35366 4.71468 4.82718 4.92845 5.00303 5.09018 5.11964 5.13830 5.39963 5.47752 5.53234 5.56292 5.60799 5.67042 5.76273 5.86775 5.87772 5.93972 6.03422 6.09632 6.32945 7.31700 7.57065 7.59670 8.33237 8.51184 9.21919 10.84388 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.048018 B = 0.003590 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.971807 B = 7797.174890 C = 8157.882832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.147 4.147 11 C 0.548 3.452 12 O -0.513 6.513 13 N -0.628 5.628 14 C 0.095 3.905 15 C -0.157 4.157 16 C 0.155 3.845 17 O -0.548 6.548 18 C -0.143 4.143 19 C -0.162 4.162 20 C -0.174 4.174 21 C 0.086 3.914 22 H 0.269 0.731 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.380 0.620 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.967 -18.670 0.799 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.387 6.387 13 N -0.367 5.367 14 C -0.029 4.029 15 C -0.195 4.195 16 C 0.113 3.887 17 O -0.355 6.355 18 C -0.161 4.161 19 C -0.199 4.199 20 C -0.210 4.210 21 C -0.038 4.038 22 H 0.079 0.921 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.229 0.771 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.880 -19.360 1.059 21.761 hybrid contribution 2.061 1.936 -0.190 2.834 sum 11.941 -17.423 0.868 21.140 Atomic orbital electron populations 1.70003 1.05967 1.27614 1.46667 1.24992 0.95030 0.99027 0.94487 0.86217 0.79239 0.81202 0.78805 1.19917 1.20786 1.19925 1.22816 0.94858 0.91609 1.59209 0.90973 1.85418 1.04874 0.96316 1.96720 1.23508 1.06522 0.94901 1.04771 1.20061 0.85668 0.85413 0.75182 1.90719 1.14937 1.85108 1.47932 1.48605 1.06526 1.05500 1.76040 1.22412 0.80602 0.98740 1.01107 1.23487 0.99783 0.94088 1.02111 1.21444 0.92106 0.92030 0.83122 1.86481 1.91051 1.37367 1.20565 1.22087 1.06579 0.89124 0.98335 1.22882 0.97450 0.96539 1.03034 1.22971 0.92182 1.02347 1.03545 1.22570 0.97060 0.80837 1.03311 0.92087 0.89287 0.89299 0.89763 0.91267 0.89356 0.88886 0.77120 0.86459 0.87602 0.89097 0.88697 0.88432 0.90790 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.00 5.17 36.00 0.19 -2.81 16 11 C 0.55 10.66 7.87 -10.99 -0.09 10.58 16 12 O -0.51 -12.10 16.19 5.55 0.09 -12.01 16 13 N -0.63 -8.99 3.34 -170.26 -0.57 -9.56 16 14 C 0.09 0.96 6.44 -2.35 -0.02 0.94 16 15 C -0.16 -1.27 6.24 -24.58 -0.15 -1.42 16 16 C 0.15 1.44 1.12 -88.78 -0.10 1.34 16 17 O -0.55 -5.03 11.60 -35.23 -0.41 -5.44 16 18 C -0.14 -1.23 5.08 -90.62 -0.46 -1.69 16 19 C -0.16 -1.32 9.90 -26.69 -0.26 -1.58 16 20 C -0.17 -1.49 9.95 -26.69 -0.27 -1.76 16 21 C 0.09 1.07 5.96 -3.07 -0.02 1.05 16 22 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 23 H 0.09 1.68 7.86 -51.91 -0.41 1.28 16 24 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 25 H 0.08 0.85 7.50 -51.93 -0.39 0.46 16 26 H 0.07 0.59 7.93 -51.93 -0.41 0.18 16 27 H 0.09 0.70 7.91 -51.93 -0.41 0.29 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.38 2.64 8.55 45.56 0.39 3.03 16 30 H 0.12 0.90 7.95 -51.93 -0.41 0.49 16 31 H 0.11 0.96 7.11 -51.93 -0.37 0.59 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 36 H 0.08 1.03 7.82 -51.93 -0.41 0.63 16 LS Contribution 316.03 15.07 4.76 4.76 Total: -1.00 -34.40 316.03 -8.10 -42.50 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.50 Total: 1.08 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -0.98 Total: -8.33 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.17 Total: -35.00 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.32 Total: -17.45 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.40 -8.10 -42.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331783848.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.916 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds