Wall clock time and date at job start Mon Mar 30 2020 01:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99963 * 2 1 4 4 H 1.48491 * 109.47047 * 239.99725 * 3 2 1 5 5 H 1.48498 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46841 * 119.99572 * 3 2 1 7 7 C 1.38800 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00169 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00072 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47467 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.47743 * 125.81887 * 359.90665 * 13 11 10 15 15 C 1.54909 * 104.83995 * 155.82587 * 14 13 11 16 16 C 1.55159 * 101.57990 * 37.09908 * 15 14 13 17 17 O 1.42898 * 110.87348 * 82.92981 * 16 15 14 18 18 C 1.53006 * 110.71889 * 206.13300 * 16 15 14 19 19 C 1.53000 * 117.49402 * 243.72095 * 18 16 15 20 20 C 1.53000 * 117.49546 * 175.06404 * 18 16 15 21 21 C 1.47020 * 125.64983 * 179.97438 * 13 11 10 22 22 H 0.96999 * 120.00373 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47228 * 60.00102 * 10 9 7 24 24 H 1.08999 * 109.46922 * 300.00118 * 10 9 7 25 25 H 1.09003 * 110.29227 * 37.02448 * 14 13 11 26 26 H 1.09001 * 110.43832 * 274.70711 * 14 13 11 27 27 H 1.08994 * 111.00889 * 279.01887 * 15 14 13 28 28 H 1.09006 * 111.00238 * 155.16698 * 15 14 13 29 29 H 0.96700 * 113.99955 * 305.68265 * 17 16 15 30 30 H 1.08994 * 115.54955 * 29.39095 * 18 16 15 31 31 H 1.08995 * 117.50280 * 359.97438 * 19 18 16 32 32 H 1.09001 * 117.49392 * 145.02259 * 19 18 16 33 33 H 1.09006 * 117.49554 * 214.97753 * 20 18 16 34 34 H 1.08997 * 117.50064 * 359.97438 * 20 18 16 35 35 H 1.09002 * 109.88367 * 61.60808 * 21 13 11 36 36 H 1.09000 * 109.88319 * 300.59426 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0007 14 6 4.3185 -6.2491 -0.0028 15 6 4.8023 -7.5868 0.6104 16 6 3.7710 -8.5882 0.0264 17 8 4.1430 -8.9906 -1.2933 18 6 3.6222 -9.8065 0.9399 19 6 4.0399 -11.1666 0.3772 20 6 2.5568 -10.8406 0.5704 21 6 2.4665 -7.7640 -0.0009 22 1 -0.4851 0.8400 -0.0004 23 1 3.1244 -3.7314 0.8906 24 1 3.1244 -3.7313 -0.8894 25 1 4.6447 -5.4101 0.6119 26 1 4.6916 -6.1418 -1.0214 27 1 4.7479 -7.5601 1.6987 28 1 5.8120 -7.8270 0.2770 29 1 4.2868 -8.2541 -1.9032 30 1 3.8004 -9.6241 1.9996 31 1 4.4203 -11.1935 -0.6439 32 1 4.4925 -11.8790 1.0669 33 1 2.0343 -11.3388 1.3871 34 1 1.9617 -10.6528 -0.3232 35 1 1.8998 -7.9970 -0.9024 36 1 1.8676 -7.9885 0.8817 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331783848.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:55 Heat of formation + Delta-G solvation = -81.223607 kcal Electronic energy + Delta-G solvation = -18497.162626 eV Core-core repulsion = 15493.400552 eV Total energy + Delta-G solvation = -3003.762075 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.47068 -39.71779 -37.21528 -35.93650 -34.59961 -32.29212 -30.92784 -29.28676 -27.67708 -25.22146 -23.18568 -23.06968 -21.08125 -20.71005 -19.65334 -18.35122 -17.64783 -17.43298 -16.89173 -16.51091 -16.33962 -15.84638 -15.67824 -15.31110 -14.65658 -14.52325 -13.87539 -13.77861 -13.62945 -13.25542 -13.20210 -13.10260 -12.86705 -12.64706 -12.43962 -12.27881 -12.00814 -11.75582 -11.57728 -11.16168 -11.13765 -10.99568 -10.64704 -10.30539 -9.79855 -8.70412 -8.35518 -6.15059 1.20963 1.43592 1.44089 1.50329 1.54383 2.00571 2.26377 2.74812 2.98643 3.16618 3.22038 3.46540 3.51660 3.59680 3.85973 4.02665 4.16757 4.21252 4.24683 4.30605 4.34713 4.41000 4.59435 4.72775 4.85150 4.85913 4.96154 5.01559 5.14993 5.22767 5.26947 5.39049 5.40198 6.18338 6.29375 6.69903 7.04646 7.05434 8.73613 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.048018 B = 0.003590 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.971807 B = 7797.174890 C = 8157.882832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.085 0.915 9 S -0.154 6.154 10 C -0.118 4.118 11 C 0.545 3.455 12 O -0.568 6.568 13 N -0.617 5.617 14 C 0.083 3.917 15 C -0.143 4.143 16 C 0.165 3.835 17 O -0.553 6.553 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.184 4.184 21 C 0.083 3.917 22 H 0.272 0.728 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.390 0.610 30 H 0.131 0.869 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.345 -19.041 1.092 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.074 5.926 10 C -0.269 4.269 11 C 0.333 3.667 12 O -0.447 6.447 13 N -0.352 5.352 14 C -0.038 4.038 15 C -0.181 4.181 16 C 0.123 3.877 17 O -0.361 6.361 18 C -0.167 4.167 19 C -0.188 4.188 20 C -0.221 4.221 21 C -0.040 4.040 22 H 0.080 0.920 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.137 0.863 29 H 0.240 0.760 30 H 0.149 0.851 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.323 -19.771 1.344 23.879 hybrid contribution 1.050 1.894 -0.311 2.188 sum 14.373 -17.877 1.033 22.962 Atomic orbital electron populations 1.70178 1.08057 1.28747 1.47848 1.26158 0.95969 1.03399 0.93627 0.84979 0.77783 0.75499 0.79582 1.18534 1.20456 1.18538 1.23164 0.95376 0.91783 1.59153 0.89737 1.85636 1.10573 0.99374 1.97061 1.23295 1.03428 0.93634 1.06561 1.19862 0.85410 0.86059 0.75339 1.90696 1.17253 1.85803 1.50929 1.48514 1.08182 1.05147 1.73404 1.22828 0.77500 1.00411 1.03052 1.23476 1.00387 0.91816 1.02374 1.21344 0.90540 0.92172 0.83636 1.86487 1.90765 1.38125 1.20713 1.22208 1.06636 0.88958 0.98896 1.22895 0.96672 0.96342 1.02918 1.22998 0.92661 1.03067 1.03423 1.22730 0.99054 0.80176 1.02081 0.91950 0.87317 0.87300 0.89099 0.88912 0.88686 0.86251 0.75973 0.85107 0.88462 0.87348 0.87701 0.89939 0.92298 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.27 29.55 68.60 2.03 45.30 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.55 -31.22 9.50 67.95 0.65 -30.57 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.64 20.57 -56.49 -1.16 -9.81 16 10 C -0.12 -4.77 5.17 71.23 0.37 -4.40 16 11 C 0.54 21.28 7.87 87.66 0.69 21.97 16 12 O -0.57 -27.90 16.19 -3.06 -0.05 -27.95 16 13 N -0.62 -16.93 3.34 -810.97 -2.71 -19.63 16 14 C 0.08 1.42 6.44 86.79 0.56 1.98 16 15 C -0.14 -1.78 6.24 31.99 0.20 -1.58 16 16 C 0.16 2.70 1.12 -9.60 -0.01 2.69 16 17 O -0.55 -8.86 11.60 -148.98 -1.73 -10.59 16 18 C -0.15 -2.23 5.08 -10.79 -0.05 -2.29 16 19 C -0.15 -2.11 9.90 30.62 0.30 -1.81 16 20 C -0.18 -2.96 9.95 30.62 0.30 -2.66 16 21 C 0.08 2.02 5.96 86.73 0.52 2.54 16 22 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 23 H 0.11 3.94 7.86 -2.39 -0.02 3.92 16 24 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 25 H 0.09 1.49 7.50 -2.39 -0.02 1.48 16 26 H 0.09 1.22 7.93 -2.39 -0.02 1.20 16 27 H 0.09 1.13 7.91 -2.39 -0.02 1.11 16 28 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.39 4.40 8.55 -74.06 -0.63 3.77 16 30 H 0.13 1.62 7.95 -2.39 -0.02 1.60 16 31 H 0.10 1.55 7.11 -2.39 -0.02 1.54 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.62 8.07 -2.39 -0.02 1.60 16 36 H 0.07 1.78 7.82 -2.39 -0.02 1.76 16 Total: -1.00 -77.50 316.03 1.10 -76.39 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.45 Total: 15.14 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 3.99 Total: -12.91 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -2.42 Total: -75.58 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -1.78 Total: -38.53 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.81 kcal Total: -77.50 1.10 -76.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331783848.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.829 kcal (2) G-P(sol) polarization free energy of solvation -77.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds