Wall clock time and date at job start Mon Mar 30 2020 01:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00247 * 2 1 4 4 H 1.48496 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46790 * 299.99482 * 3 2 1 6 6 H 1.48503 * 109.47416 * 59.99404 * 3 2 1 7 7 C 1.37879 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00093 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00178 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47271 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00095 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00058 * 359.97438 * 11 10 9 13 13 C 1.47586 * 120.00121 * 179.97438 * 11 10 9 14 14 C 1.38557 * 119.78640 * 359.97438 * 13 11 10 15 15 C 1.40197 * 119.52620 * 179.72122 * 14 13 11 16 16 C 1.40707 * 121.04672 * 180.30269 * 15 14 13 17 17 C 1.36053 * 119.67791 * 179.97438 * 16 15 14 18 18 C 1.39404 * 120.98034 * 0.02562 * 17 16 15 19 19 C 1.36096 * 121.01815 * 359.97438 * 18 17 16 20 20 C 1.40590 * 119.72286 * 0.02562 * 19 18 17 21 21 C 1.40462 * 120.98990 * 179.97438 * 20 19 18 22 22 C 1.36388 * 119.98687 * 180.02562 * 21 20 19 23 23 O 1.35738 * 119.64902 * 179.97438 * 22 21 20 24 24 H 0.97000 * 119.99497 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47245 * 59.99652 * 9 7 2 26 26 H 1.09005 * 109.46712 * 300.00023 * 9 7 2 27 27 H 0.97006 * 120.00083 * 359.97438 * 10 9 7 28 28 H 1.08002 * 120.23977 * 359.97438 * 14 13 11 29 29 H 1.08003 * 120.15796 * 359.95991 * 16 15 14 30 30 H 1.08003 * 119.50882 * 179.97438 * 17 16 15 31 31 H 1.07999 * 119.49440 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.14182 * 179.97438 * 19 18 17 33 33 H 1.07997 * 120.00467 * 0.02843 * 21 20 19 34 34 H 0.96691 * 113.99712 * 90.00309 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 6 1.7535 -4.8834 0.0015 12 8 0.5582 -5.1055 0.0006 13 6 2.7125 -6.0052 0.0021 14 6 4.0738 -5.7470 0.0025 15 6 4.9799 -6.8168 0.0091 16 6 6.3688 -6.5914 0.0161 17 6 7.2231 -7.6503 0.0229 18 6 6.7435 -8.9592 0.0226 19 6 5.4070 -9.2165 0.0159 20 6 4.4918 -8.1493 0.0087 21 6 3.1070 -8.3842 0.0013 22 6 2.2374 -7.3336 -0.0062 23 8 0.9005 -7.5685 -0.0139 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 3.1566 -3.4356 0.0021 28 1 4.4343 -4.7290 0.0020 29 1 6.7548 -5.5827 0.0158 30 1 8.2886 -7.4741 0.0278 31 1 7.4432 -9.7819 0.0276 32 1 5.0510 -10.2361 0.0153 33 1 2.7310 -9.3966 0.0014 34 1 0.5078 -7.6347 0.8672 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334524371.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:26 Heat of formation + Delta-G solvation = -40.303356 kcal Electronic energy + Delta-G solvation = -19393.210297 eV Core-core repulsion = 16255.778706 eV Total energy + Delta-G solvation = -3137.431591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.68773 -38.87233 -37.58137 -35.20564 -34.16532 -32.85614 -32.24172 -30.21322 -28.88290 -27.16604 -24.37019 -23.16810 -22.42155 -21.98242 -20.08546 -18.63163 -18.01045 -17.07820 -16.24128 -16.00761 -15.21816 -15.08802 -14.82284 -14.64411 -14.31231 -13.91054 -13.80409 -13.46232 -13.38067 -12.76696 -12.57712 -11.97350 -11.88735 -11.61144 -11.23274 -11.00945 -10.96698 -10.87927 -10.62992 -10.32353 -10.08345 -9.40109 -9.08040 -8.76051 -8.58703 -8.00391 -7.86899 -6.18300 -4.25396 0.27926 0.72994 1.84947 2.54413 3.22596 3.29568 3.32509 3.66144 3.96942 4.06101 4.29363 4.34372 4.45499 4.67611 4.76312 4.93639 5.03360 5.15847 5.18055 5.23533 5.44582 5.58612 5.75251 5.76103 5.99029 6.01796 6.25053 6.34168 6.38186 6.58597 6.76611 7.28836 7.38544 7.49778 7.63998 7.83348 7.94596 8.57450 8.75561 9.04661 9.41157 10.91979 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.004309 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.424356 B = 6496.509753 C = 7681.267326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.707 5.707 11 C 0.536 3.464 12 O -0.534 6.534 13 C -0.142 4.142 14 C -0.054 4.054 15 C -0.070 4.070 16 C -0.091 4.091 17 C -0.128 4.128 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.023 4.023 21 C -0.154 4.154 22 C 0.165 3.835 23 O -0.477 6.477 24 H 0.266 0.734 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.388 0.612 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.752 -17.016 1.704 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.356 5.356 11 C 0.321 3.679 12 O -0.413 6.413 13 C -0.146 4.146 14 C -0.074 4.074 15 C -0.070 4.070 16 C -0.109 4.109 17 C -0.146 4.146 18 C -0.127 4.127 19 C -0.132 4.132 20 C -0.023 4.023 21 C -0.172 4.172 22 C 0.119 3.881 23 O -0.288 6.288 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.222 0.778 28 H 0.157 0.843 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 12.748 -16.984 1.101 21.264 hybrid contribution 0.812 1.042 0.456 1.398 sum 13.560 -15.942 1.557 20.987 Atomic orbital electron populations 1.69988 1.06111 1.27234 1.48852 1.24952 0.94919 0.99467 0.94651 0.86353 0.79809 0.82922 0.77779 1.19629 1.20761 1.20775 1.21246 0.93282 0.90402 1.53289 0.91853 1.19151 0.88259 0.81750 0.97931 1.46447 1.11143 1.05959 1.72005 1.18055 0.88024 0.83040 0.78751 1.90765 1.15735 1.84633 1.50133 1.20779 0.94104 0.94636 1.05101 1.21567 0.91497 0.98960 0.95331 1.18035 0.93791 0.92524 1.02620 1.21124 0.91734 0.99712 0.98361 1.20831 0.99916 0.92594 1.01281 1.20881 0.95569 0.96923 0.99286 1.21011 0.93063 0.98173 1.00966 1.17973 0.93049 0.92762 0.98509 1.21148 0.91806 0.99259 1.05018 1.18048 0.84270 0.90062 0.95711 1.84778 1.17126 1.93388 1.33479 0.92462 0.95291 0.95321 0.77794 0.84325 0.85142 0.85903 0.85993 0.85506 0.84601 0.74849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.04 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.66 5.43 -5.20 -0.03 6.63 16 10 N -0.71 -15.26 5.49 -62.52 -0.34 -15.60 16 11 C 0.54 11.35 7.76 -12.45 -0.10 11.25 16 12 O -0.53 -13.17 15.09 -16.83 -0.25 -13.42 16 13 C -0.14 -2.39 5.88 -104.89 -0.62 -3.01 16 14 C -0.05 -0.76 9.28 -38.73 -0.36 -1.12 16 15 C -0.07 -0.87 5.74 -106.83 -0.61 -1.49 16 16 C -0.09 -0.94 9.76 -39.43 -0.39 -1.32 16 17 C -0.13 -1.13 9.95 -39.93 -0.40 -1.53 16 18 C -0.11 -0.93 9.95 -39.92 -0.40 -1.33 16 19 C -0.11 -1.10 9.76 -39.46 -0.39 -1.48 16 20 C -0.02 -0.27 5.74 -106.77 -0.61 -0.89 16 21 C -0.15 -1.93 9.64 -39.41 -0.38 -2.31 16 22 C 0.17 2.55 6.65 -39.17 -0.26 2.29 16 23 O -0.48 -7.59 11.48 -41.05 -0.47 -8.06 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.39 7.14 6.31 -40.82 -0.26 6.88 16 28 H 0.14 1.69 6.35 -52.49 -0.33 1.36 16 29 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 30 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.39 4.72 9.06 45.56 0.41 5.13 16 LS Contribution 300.68 15.07 4.53 4.53 Total: -1.00 -33.86 300.68 -8.44 -42.30 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -2.67 Total: 7.50 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -4.95 Total: -7.68 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.39 Total: -40.90 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.73 Total: -21.48 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.86 -8.44 -42.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334524371.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.997 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds