Wall clock time and date at job start Mon Mar 30 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00247 * 2 1 4 4 H 1.48496 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46790 * 299.99482 * 3 2 1 6 6 H 1.48503 * 109.47416 * 59.99404 * 3 2 1 7 7 C 1.37879 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00093 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00178 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47271 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00095 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00058 * 359.97438 * 11 10 9 13 13 C 1.47586 * 120.00121 * 179.97438 * 11 10 9 14 14 C 1.38557 * 119.78640 * 359.97438 * 13 11 10 15 15 C 1.40197 * 119.52620 * 179.72122 * 14 13 11 16 16 C 1.40707 * 121.04672 * 180.30269 * 15 14 13 17 17 C 1.36053 * 119.67791 * 179.97438 * 16 15 14 18 18 C 1.39404 * 120.98034 * 0.02562 * 17 16 15 19 19 C 1.36096 * 121.01815 * 359.97438 * 18 17 16 20 20 C 1.40590 * 119.72286 * 0.02562 * 19 18 17 21 21 C 1.40462 * 120.98990 * 179.97438 * 20 19 18 22 22 C 1.36388 * 119.98687 * 180.02562 * 21 20 19 23 23 O 1.35738 * 119.64902 * 179.97438 * 22 21 20 24 24 H 0.97000 * 119.99497 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47245 * 59.99652 * 9 7 2 26 26 H 1.09005 * 109.46712 * 300.00023 * 9 7 2 27 27 H 0.97006 * 120.00083 * 359.97438 * 10 9 7 28 28 H 1.08002 * 120.23977 * 359.97438 * 14 13 11 29 29 H 1.08003 * 120.15796 * 359.95991 * 16 15 14 30 30 H 1.08003 * 119.50882 * 179.97438 * 17 16 15 31 31 H 1.07999 * 119.49440 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.14182 * 179.97438 * 19 18 17 33 33 H 1.07997 * 120.00467 * 0.02843 * 21 20 19 34 34 H 0.96691 * 113.99712 * 90.00309 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 6 1.7535 -4.8834 0.0015 12 8 0.5582 -5.1055 0.0006 13 6 2.7125 -6.0052 0.0021 14 6 4.0738 -5.7470 0.0025 15 6 4.9799 -6.8168 0.0091 16 6 6.3688 -6.5914 0.0161 17 6 7.2231 -7.6503 0.0229 18 6 6.7435 -8.9592 0.0226 19 6 5.4070 -9.2165 0.0159 20 6 4.4918 -8.1493 0.0087 21 6 3.1070 -8.3842 0.0013 22 6 2.2374 -7.3336 -0.0062 23 8 0.9005 -7.5685 -0.0139 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 3.1566 -3.4356 0.0021 28 1 4.4343 -4.7290 0.0020 29 1 6.7548 -5.5827 0.0158 30 1 8.2886 -7.4741 0.0278 31 1 7.4432 -9.7819 0.0276 32 1 5.0510 -10.2361 0.0153 33 1 2.7310 -9.3966 0.0014 34 1 0.5078 -7.6347 0.8672 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334524371.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:25 Heat of formation + Delta-G solvation = -63.631414 kcal Electronic energy + Delta-G solvation = -19394.221877 eV Core-core repulsion = 16255.778706 eV Total energy + Delta-G solvation = -3138.443171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.76070 -40.25681 -38.82216 -36.35043 -36.02329 -34.41463 -33.58983 -31.33977 -29.84816 -29.05316 -25.71405 -24.55685 -23.71088 -22.92349 -21.70846 -19.74406 -19.54043 -18.04764 -18.01087 -17.17104 -16.87311 -16.38696 -16.15664 -15.97673 -15.74902 -15.25404 -14.88279 -14.48510 -14.32832 -14.21373 -13.95770 -13.92937 -13.49873 -12.91279 -12.76599 -12.41957 -12.23344 -12.07315 -11.93683 -11.73942 -11.47974 -10.97669 -10.83617 -10.75999 -9.94710 -9.51154 -8.85814 -8.30766 -6.47993 -0.67964 -0.23138 0.96602 1.42822 1.44363 1.49797 1.57842 2.26605 2.33083 2.49228 3.03958 3.05677 3.25436 3.55764 3.65419 3.94197 4.04263 4.21217 4.26316 4.39341 4.48235 4.66445 4.82690 4.90536 5.02648 5.15390 5.19684 5.19855 5.26930 5.43095 5.56196 5.58909 5.63727 5.67629 5.81115 6.01930 6.61430 6.79054 6.82553 7.20027 7.38496 8.81909 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.004309 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.424356 B = 6496.509753 C = 7681.267326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.702 5.702 11 C 0.535 3.465 12 O -0.580 6.580 13 C -0.175 4.175 14 C -0.041 4.041 15 C -0.086 4.086 16 C -0.103 4.103 17 C -0.120 4.120 18 C -0.098 4.098 19 C -0.122 4.122 20 C -0.033 4.033 21 C -0.139 4.139 22 C 0.137 3.863 23 O -0.498 6.498 24 H 0.269 0.731 25 H -0.013 1.013 26 H -0.009 1.009 27 H 0.405 0.595 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.258 -18.127 1.778 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.353 5.353 11 C 0.323 3.677 12 O -0.462 6.462 13 C -0.179 4.179 14 C -0.060 4.060 15 C -0.086 4.086 16 C -0.121 4.121 17 C -0.138 4.138 18 C -0.116 4.116 19 C -0.139 4.139 20 C -0.033 4.033 21 C -0.157 4.157 22 C 0.091 3.909 23 O -0.310 6.310 24 H 0.078 0.922 25 H 0.005 0.995 26 H 0.009 0.991 27 H 0.242 0.758 28 H 0.168 0.832 29 H 0.166 0.834 30 H 0.172 0.828 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.178 0.822 34 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 17.305 -18.126 1.180 25.088 hybrid contribution -0.410 1.196 0.441 1.339 sum 16.895 -16.930 1.620 23.973 Atomic orbital electron populations 1.70153 1.08341 1.28588 1.49846 1.26093 0.95797 1.03973 0.93711 0.85073 0.79111 0.77079 0.77717 1.17472 1.20449 1.20343 1.21626 0.94340 0.90387 1.53111 0.89694 1.18598 0.88619 0.84078 0.94259 1.46146 1.11215 1.05282 1.72626 1.18782 0.88353 0.83682 0.76862 1.90718 1.18077 1.85342 1.52070 1.20418 0.94212 0.93364 1.09914 1.21715 0.90467 1.00261 0.93543 1.18245 0.94789 0.92287 1.03259 1.21381 0.90668 1.01417 0.98637 1.21291 1.01373 0.92267 0.98849 1.21371 0.95698 0.97952 0.96560 1.21328 0.93253 0.98618 1.00731 1.18293 0.93232 0.93568 0.98213 1.21346 0.91817 0.99424 1.03096 1.18234 0.84315 0.90326 0.98043 1.84739 1.18124 1.93423 1.34700 0.92182 0.99455 0.99106 0.75801 0.83183 0.83436 0.82845 0.82593 0.83007 0.82168 0.73846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.99 42.46 29.54 68.60 2.03 44.48 16 4 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.56 -30.78 9.28 25.60 0.24 -30.55 16 8 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.27 15.19 5.43 85.64 0.46 15.65 16 10 N -0.70 -31.95 5.49 -469.97 -2.58 -34.53 16 11 C 0.54 24.18 7.76 86.71 0.67 24.86 16 12 O -0.58 -31.03 15.09 17.19 0.26 -30.77 16 13 C -0.18 -6.13 5.88 -20.04 -0.12 -6.25 16 14 C -0.04 -1.12 9.28 22.82 0.21 -0.91 16 15 C -0.09 -1.98 5.74 -21.29 -0.12 -2.10 16 16 C -0.10 -1.75 9.76 22.36 0.22 -1.54 16 17 C -0.12 -1.52 9.95 22.04 0.22 -1.30 16 18 C -0.10 -1.16 9.95 22.05 0.22 -0.94 16 19 C -0.12 -1.84 9.76 22.35 0.22 -1.62 16 20 C -0.03 -0.72 5.74 -21.26 -0.12 -0.84 16 21 C -0.14 -3.34 9.64 22.38 0.22 -3.12 16 22 C 0.14 4.35 6.65 22.53 0.15 4.50 16 23 O -0.50 -16.89 11.48 -69.46 -0.80 -17.69 16 24 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 25 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 26 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 27 H 0.41 15.23 6.31 -92.70 -0.58 14.64 16 28 H 0.15 3.55 6.35 -2.91 -0.02 3.54 16 29 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 30 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 31 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 32 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.40 10.71 9.06 -74.06 -0.67 10.04 16 Total: -1.00 -78.18 300.68 2.02 -76.16 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -0.10 Total: 22.31 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 2.93 Total: -3.48 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -2.30 Total: -91.02 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -0.54 Total: -48.46 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -78.18 2.02 -76.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334524371.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.528 kcal (2) G-P(sol) polarization free energy of solvation -78.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds