Wall clock time and date at job start Mon Mar 30 2020 01:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30858 * 125.89131 * 2 1 4 4 N 1.40081 * 108.22233 * 179.76522 * 3 2 1 5 5 C 1.46500 * 126.03730 * 180.29668 * 4 3 2 6 6 C 1.50695 * 109.47275 * 270.13988 * 5 4 3 7 7 O 1.21290 * 120.00276 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00063 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99806 * 359.97438 * 8 6 5 10 10 C 1.37098 * 120.00291 * 179.97438 * 8 6 5 11 11 H 1.08005 * 119.99540 * 24.39608 * 10 8 6 12 12 C 1.38944 * 120.00252 * 204.38790 * 10 8 6 13 13 N 1.31413 * 120.00134 * 12.64953 * 12 10 8 14 14 Si 1.86801 * 120.00264 * 192.64522 * 12 10 8 15 15 H 1.48501 * 109.46953 * 90.00376 * 14 12 10 16 16 H 1.48496 * 109.47256 * 210.00314 * 14 12 10 17 17 H 1.48507 * 109.46835 * 330.00354 * 14 12 10 18 18 C 1.35051 * 107.92484 * 0.41800 * 4 3 2 19 19 C 1.50700 * 126.13347 * 179.84904 * 18 4 3 20 20 C 1.35369 * 107.72953 * 359.58486 * 18 4 3 21 21 Cl 1.73604 * 126.04865 * 180.29898 * 20 18 4 22 22 H 1.09006 * 109.47370 * 269.97868 * 1 2 3 23 23 H 1.08999 * 109.47272 * 29.98089 * 1 2 3 24 24 H 1.08994 * 109.47033 * 149.98032 * 1 2 3 25 25 H 1.08997 * 109.47073 * 30.14224 * 5 4 3 26 26 H 1.09006 * 109.46742 * 150.13746 * 5 4 3 27 27 H 1.09003 * 109.47288 * 85.86776 * 9 8 6 28 28 H 1.09006 * 109.47084 * 205.86716 * 9 8 6 29 29 H 1.09007 * 109.47302 * 325.86565 * 9 8 6 30 30 H 0.96994 * 120.00522 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.47201 * 269.71113 * 19 18 4 32 32 H 1.08998 * 109.47136 * 149.71266 * 19 18 4 33 33 H 1.08994 * 109.47282 * 29.71462 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0601 0.0000 4 7 3.6089 0.6350 0.0055 5 6 4.7896 1.5021 0.0134 6 6 5.1994 1.8059 -1.4046 7 8 4.5677 1.3431 -2.3308 8 7 6.2686 2.5909 -1.6436 9 6 7.0320 3.1494 -0.5249 10 6 6.6417 2.8669 -2.9337 11 1 5.9136 2.8131 -3.7296 12 6 7.9564 3.2159 -3.2171 13 7 8.8920 3.0437 -2.3105 14 14 8.3941 3.9298 -4.8869 15 1 8.2732 5.4092 -4.8398 16 1 9.7892 3.5581 -5.2339 17 1 7.4677 3.3898 -5.9143 18 6 3.6149 -0.7155 -0.0007 19 6 4.8360 -1.5987 -0.0011 20 6 2.3274 -1.1335 -0.0003 21 17 1.7892 -2.7840 0.0004 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 4.5539 2.4321 0.5307 26 1 5.6075 0.9975 0.5279 27 1 7.7822 2.4281 -0.2009 28 1 7.5248 4.0678 -0.8439 29 1 6.3568 3.3679 0.3026 30 1 9.8098 3.2870 -2.5084 31 1 5.1304 -1.8112 -1.0289 32 1 4.6089 -2.5330 0.5123 33 1 5.6520 -1.0908 0.5129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335921055.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:49 Heat of formation + Delta-G solvation = 19.103278 kcal Electronic energy + Delta-G solvation = -18702.832740 eV Core-core repulsion = 15597.837116 eV Total energy + Delta-G solvation = -3104.995624 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.45283 -40.31111 -37.37795 -36.78026 -35.10203 -33.76921 -32.85469 -30.82320 -28.42993 -27.99145 -27.29467 -25.79330 -21.83131 -21.38001 -20.24999 -18.99322 -18.26992 -17.69189 -16.87073 -16.49888 -16.03214 -15.80125 -15.44212 -14.97132 -14.46848 -14.22792 -14.14718 -13.93280 -13.44701 -13.34484 -13.26257 -13.17045 -13.10468 -12.85869 -12.73530 -12.67607 -12.38693 -12.19800 -12.17165 -11.42232 -11.05095 -10.74792 -10.09372 -9.74678 -9.29796 -8.40338 -6.05835 0.63363 0.99695 1.33497 1.39817 1.50621 1.53919 1.75980 1.87900 2.24568 2.95248 3.01358 3.49590 3.57389 3.83633 3.94651 4.01928 4.15899 4.31822 4.58258 4.59279 4.69418 4.79156 4.88419 4.96046 4.99166 5.08368 5.33997 5.39642 5.51409 5.78040 6.04688 6.40630 6.59444 7.09140 7.34514 7.89634 8.61880 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032612 B = 0.004512 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.371068 B = 6204.057061 C = 6283.308921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.080 3.920 3 N -0.316 5.316 4 N -0.349 5.349 5 C 0.131 3.869 6 C 0.420 3.580 7 O -0.625 6.625 8 N -0.451 5.451 9 C 0.111 3.889 10 C -0.345 4.345 11 H 0.064 0.936 12 C 0.007 3.993 13 N -0.888 5.888 14 Si 0.986 3.014 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.281 1.281 18 C 0.108 3.892 19 C -0.094 4.094 20 C -0.208 4.208 21 Cl -0.031 7.031 22 H 0.100 0.900 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.133 0.867 26 H 0.146 0.854 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.276 0.724 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.991 -6.466 9.902 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 N -0.138 5.138 4 N -0.129 5.129 5 C 0.007 3.993 6 C 0.208 3.792 7 O -0.512 6.512 8 N -0.170 5.170 9 C -0.032 4.032 10 C -0.473 4.473 11 H 0.082 0.918 12 C -0.196 4.196 13 N -0.526 5.526 14 Si 0.810 3.190 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.206 1.206 18 C -0.021 4.021 19 C -0.152 4.152 20 C -0.246 4.246 21 Cl -0.003 7.003 22 H 0.119 0.881 23 H 0.095 0.905 24 H 0.109 0.891 25 H 0.151 0.849 26 H 0.164 0.836 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.924 -5.390 9.496 12.930 hybrid contribution 0.467 -0.469 -1.122 1.303 sum -6.458 -5.858 8.374 12.089 Atomic orbital electron populations 1.20328 0.83678 1.04152 1.04587 1.22844 0.98824 0.88638 0.98424 1.77331 0.86812 1.23231 1.26451 1.47834 1.05002 1.04030 1.56068 1.21620 0.85292 0.97032 0.95379 1.21005 0.84606 0.82199 0.91391 1.90550 1.57086 1.56327 1.47200 1.43789 1.25261 1.40901 1.07078 1.21622 0.94869 0.99744 0.86968 1.19508 0.94786 1.47564 0.85479 0.91771 1.25990 0.94296 0.96709 1.02634 1.70011 1.01747 1.44854 1.35939 0.85049 0.77566 0.78886 0.77543 1.18939 1.19473 1.20610 1.21236 0.97494 0.84892 0.98512 1.20624 0.92040 0.98578 1.03924 1.20374 0.92002 0.87512 1.24682 1.98268 1.89593 1.14497 1.97900 0.88148 0.90534 0.89103 0.84892 0.83622 0.92617 0.92060 0.91020 0.91389 0.90693 0.87122 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.31 71.24 0.73 -0.87 16 2 C 0.08 2.63 7.22 43.11 0.31 2.94 16 3 N -0.32 -12.24 12.58 -47.34 -0.60 -12.84 16 4 N -0.35 -13.03 3.10 -338.29 -1.05 -14.08 16 5 C 0.13 4.59 5.33 85.63 0.46 5.05 16 6 C 0.42 20.21 7.70 87.66 0.67 20.88 16 7 O -0.62 -36.41 16.14 -3.06 -0.05 -36.46 16 8 N -0.45 -22.39 3.01 -658.88 -1.98 -24.37 16 9 C 0.11 4.42 8.44 127.77 1.08 5.50 16 10 C -0.35 -19.33 9.24 84.04 0.78 -18.55 16 11 H 0.06 3.94 7.45 -2.91 -0.02 3.92 16 12 C 0.01 0.35 5.04 84.92 0.43 0.78 16 13 N -0.89 -44.73 10.83 21.66 0.23 -44.50 16 14 Si 0.99 41.65 29.57 68.60 2.03 43.68 16 15 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 16 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 C 0.11 3.63 6.94 41.40 0.29 3.92 16 19 C -0.09 -2.48 9.95 71.24 0.71 -1.77 16 20 C -0.21 -6.66 6.63 22.02 0.15 -6.51 16 21 Cl -0.03 -0.79 28.59 -2.72 -0.08 -0.86 16 22 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 23 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.09 1.86 8.01 -2.39 -0.02 1.84 16 25 H 0.13 4.02 7.41 -2.39 -0.02 4.00 16 26 H 0.15 3.99 7.01 -2.38 -0.02 3.97 16 27 H 0.06 2.21 7.83 -2.39 -0.02 2.19 16 28 H 0.06 2.66 6.80 -2.38 -0.02 2.65 16 29 H 0.07 2.17 6.61 -2.38 -0.02 2.16 16 30 H 0.28 13.02 8.31 -92.71 -0.77 12.25 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.11 2.31 7.91 -2.39 -0.02 2.29 16 33 H 0.09 2.06 7.08 -2.39 -0.02 2.04 16 Total: -1.00 -71.90 300.78 5.24 -66.66 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.13 Total: 11.41 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 5.60 Total: 11.36 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -3.39 Total: -95.79 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.05 Total: -36.46 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.86 kcal Total: -71.90 5.24 -66.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335921055.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.762 kcal (2) G-P(sol) polarization free energy of solvation -71.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds