Wall clock time and date at job start Mon Mar 30 2020 01:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99847 * 2 1 4 4 H 1.48498 * 109.47428 * 269.99843 * 3 2 1 5 5 H 1.48503 * 109.46896 * 30.00007 * 3 2 1 6 6 H 1.48505 * 109.46918 * 149.99970 * 3 2 1 7 7 C 1.37877 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00331 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99506 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.47052 * 179.97438 * 9 7 2 11 11 C 1.46902 * 111.00316 * 174.83848 * 10 9 7 12 12 H 1.09005 * 110.26346 * 327.37759 * 11 10 9 13 13 C 1.54334 * 110.38854 * 89.50966 * 11 10 9 14 14 C 1.54344 * 102.39266 * 145.32791 * 13 11 10 15 15 C 1.51390 * 105.16844 * 333.63965 * 14 13 11 16 16 C 1.38502 * 130.32659 * 197.15586 * 15 14 13 17 17 C 1.38299 * 120.27025 * 179.73914 * 16 15 14 18 18 F 1.35105 * 120.05262 * 180.29029 * 17 16 15 19 19 C 1.38617 * 119.88977 * 0.58403 * 17 16 15 20 20 F 1.35098 * 120.07993 * 179.70461 * 19 17 16 21 21 C 1.38459 * 119.83828 * 359.43239 * 19 17 16 22 22 F 1.35100 * 119.90976 * 180.30123 * 21 19 17 23 23 C 1.38211 * 109.75038 * 17.19856 * 15 14 13 24 24 H 0.96998 * 120.00309 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47319 * 60.00090 * 9 7 2 26 26 H 1.08997 * 109.47570 * 299.99825 * 9 7 2 27 27 H 1.00905 * 111.00164 * 298.79395 * 10 9 7 28 28 H 1.09007 * 110.82694 * 263.55170 * 13 11 10 29 29 H 1.09001 * 110.82445 * 26.90375 * 13 11 10 30 30 H 1.09001 * 110.30373 * 92.56027 * 14 13 11 31 31 H 1.09001 * 110.30239 * 214.71617 * 14 13 11 32 32 H 1.07999 * 119.86538 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 5.4645 -2.6200 -0.1229 12 1 5.8159 -1.7864 -0.7311 13 6 6.1226 -2.5796 1.2726 14 6 7.3637 -3.4766 1.0796 15 6 6.9952 -4.4274 -0.0393 16 6 7.5709 -5.6277 -0.4217 17 6 7.0545 -6.3399 -1.4888 18 9 7.6160 -7.5131 -1.8543 19 6 5.9638 -5.8450 -2.1865 20 9 5.4600 -6.5346 -3.2333 21 6 5.3884 -4.6449 -1.8045 22 9 4.3215 -4.1643 -2.4797 23 6 5.9041 -3.9352 -0.7302 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6808 0.8905 26 1 3.8753 -0.6796 -0.8894 27 1 3.6937 -3.0713 0.8252 28 1 6.4162 -1.5627 1.5333 29 1 5.4549 -2.9940 2.0280 30 1 8.2257 -2.8733 0.7947 31 1 7.5749 -4.0317 1.9936 32 1 8.4237 -6.0113 0.1186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336216039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:47 Heat of formation + Delta-G solvation = -105.710681 kcal Electronic energy + Delta-G solvation = -20430.692515 eV Core-core repulsion = 16748.567910 eV Total energy + Delta-G solvation = -3682.124606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.67352 -48.99626 -48.24324 -40.18709 -36.36347 -33.85726 -32.20938 -30.68752 -28.81079 -27.75974 -25.14676 -23.33293 -21.64424 -21.40998 -20.74404 -18.09009 -17.77895 -17.19924 -16.76753 -16.69214 -15.91768 -15.55377 -15.29793 -14.95232 -14.66618 -14.39359 -14.33130 -14.05416 -13.74382 -13.19886 -12.81615 -12.54817 -12.29099 -12.09240 -11.86563 -11.69704 -11.67779 -11.41551 -10.80423 -10.70499 -10.46204 -9.91921 -9.36078 -8.81599 -8.69412 -8.61667 -7.60854 -6.07918 -4.06246 0.64328 0.75167 3.03124 3.25819 3.32765 3.33293 3.33540 3.97672 4.13068 4.28380 4.35449 4.38515 4.69561 4.80064 4.91730 5.18305 5.24955 5.31080 5.40298 5.48268 5.50973 5.63778 5.72642 5.86052 5.98754 6.09749 6.14280 6.58640 6.66213 6.90581 7.52342 7.78223 8.17661 8.59989 9.01374 9.53019 11.05462 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.027638 B = 0.005043 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.862376 B = 5551.214571 C = 6298.828934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.515 4.515 8 H 0.080 0.920 9 C 0.167 3.833 10 N -0.669 5.669 11 C 0.125 3.875 12 H 0.096 0.904 13 C -0.148 4.148 14 C -0.076 4.076 15 C -0.051 4.051 16 C -0.134 4.134 17 C 0.094 3.906 18 F -0.124 7.124 19 C 0.019 3.981 20 F -0.120 7.120 21 C 0.140 3.860 22 F -0.099 7.099 23 C -0.098 4.098 24 H 0.264 0.736 25 H -0.013 1.013 26 H 0.022 0.978 27 H 0.341 0.659 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.362 -9.028 1.410 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.553 4.553 8 H 0.098 0.902 9 C 0.039 3.961 10 N -0.298 5.298 11 C 0.013 3.987 12 H 0.114 0.886 13 C -0.187 4.187 14 C -0.113 4.113 15 C -0.052 4.052 16 C -0.153 4.153 17 C 0.073 3.927 18 F -0.103 7.103 19 C -0.002 4.002 20 F -0.099 7.099 21 C 0.119 3.881 22 F -0.077 7.077 23 C -0.100 4.100 24 H 0.074 0.926 25 H 0.005 0.995 26 H 0.040 0.960 27 H 0.159 0.841 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 18.001 -9.024 0.644 20.146 hybrid contribution 0.382 0.826 0.300 0.958 sum 18.383 -8.197 0.944 20.150 Atomic orbital electron populations 1.69898 1.06171 1.26886 1.50837 1.24902 0.94737 0.98884 0.94767 0.86843 0.80191 0.83964 0.78593 1.20153 1.21199 1.19273 1.21021 0.88807 0.94866 1.50624 0.90219 1.20044 0.96928 0.84244 0.94850 1.60420 1.04773 1.18614 1.46041 1.21070 0.91117 0.92304 0.94161 0.88567 1.23123 0.96847 1.00527 0.98233 1.21054 0.99111 0.95486 0.95677 1.20335 0.94251 0.93640 0.96981 1.20384 1.02496 0.95194 0.97190 1.17074 0.94070 0.84489 0.97028 1.91537 1.83746 1.43981 1.90990 1.17455 0.97959 0.93477 0.91352 1.91540 1.86403 1.78037 1.53870 1.16940 0.86854 0.91431 0.92834 1.91659 1.51435 1.86915 1.77726 1.20758 0.96427 0.98591 0.94241 0.92614 0.99485 0.95960 0.84076 0.89908 0.90079 0.89252 0.89861 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.51 -14.47 9.92 -34.44 -0.34 -14.82 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.17 3.84 4.41 -4.98 -0.02 3.82 16 10 N -0.67 -13.03 6.01 -108.12 -0.65 -13.68 16 11 C 0.12 1.88 3.17 -67.83 -0.21 1.67 16 12 H 0.10 1.47 7.73 -51.93 -0.40 1.07 16 13 C -0.15 -1.69 6.72 -25.33 -0.17 -1.86 16 14 C -0.08 -0.67 6.77 -26.84 -0.18 -0.85 16 15 C -0.05 -0.56 6.14 -104.20 -0.64 -1.20 16 16 C -0.13 -1.35 10.02 -39.46 -0.40 -1.75 16 17 C 0.09 1.16 7.30 -39.42 -0.29 0.87 16 18 F -0.12 -1.54 17.19 2.25 0.04 -1.51 16 19 C 0.02 0.27 7.31 -39.36 -0.29 -0.01 16 20 F -0.12 -1.88 17.10 2.25 0.04 -1.84 16 21 C 0.14 2.23 7.28 -39.33 -0.29 1.95 16 22 F -0.10 -1.89 16.92 2.25 0.04 -1.86 16 23 C -0.10 -1.39 5.78 -104.13 -0.60 -2.00 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H -0.01 -0.28 7.20 -51.93 -0.37 -0.65 16 26 H 0.02 0.53 7.37 -51.93 -0.38 0.14 16 27 H 0.34 6.37 8.17 -39.29 -0.32 6.04 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.94 7.61 -51.93 -0.40 0.54 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -30.83 286.59 -6.79 -37.62 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -3.15 Total: -0.44 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.53 Total: -12.30 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.12 Total: -40.39 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.12 Total: -5.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.83 -6.79 -37.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336216039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.086 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds