Wall clock time and date at job start Mon Mar 30 2020 01:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99847 * 2 1 4 4 H 1.48498 * 109.47428 * 269.99843 * 3 2 1 5 5 H 1.48503 * 109.46896 * 30.00007 * 3 2 1 6 6 H 1.48505 * 109.46918 * 149.99970 * 3 2 1 7 7 C 1.37877 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00331 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99506 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.47052 * 179.97438 * 9 7 2 11 11 C 1.46902 * 111.00316 * 174.83848 * 10 9 7 12 12 H 1.09005 * 110.26346 * 327.37759 * 11 10 9 13 13 C 1.54334 * 110.38854 * 89.50966 * 11 10 9 14 14 C 1.54344 * 102.39266 * 145.32791 * 13 11 10 15 15 C 1.51390 * 105.16844 * 333.63965 * 14 13 11 16 16 C 1.38502 * 130.32659 * 197.15586 * 15 14 13 17 17 C 1.38299 * 120.27025 * 179.73914 * 16 15 14 18 18 F 1.35105 * 120.05262 * 180.29029 * 17 16 15 19 19 C 1.38617 * 119.88977 * 0.58403 * 17 16 15 20 20 F 1.35098 * 120.07993 * 179.70461 * 19 17 16 21 21 C 1.38459 * 119.83828 * 359.43239 * 19 17 16 22 22 F 1.35100 * 119.90976 * 180.30123 * 21 19 17 23 23 C 1.38211 * 109.75038 * 17.19856 * 15 14 13 24 24 H 0.96998 * 120.00309 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47319 * 60.00090 * 9 7 2 26 26 H 1.08997 * 109.47570 * 299.99825 * 9 7 2 27 27 H 1.00905 * 111.00164 * 298.79395 * 10 9 7 28 28 H 1.09007 * 110.82694 * 263.55170 * 13 11 10 29 29 H 1.09001 * 110.82445 * 26.90375 * 13 11 10 30 30 H 1.09001 * 110.30373 * 92.56027 * 14 13 11 31 31 H 1.09001 * 110.30239 * 214.71617 * 14 13 11 32 32 H 1.07999 * 119.86538 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 5.4645 -2.6200 -0.1229 12 1 5.8159 -1.7864 -0.7311 13 6 6.1226 -2.5796 1.2726 14 6 7.3637 -3.4766 1.0796 15 6 6.9952 -4.4274 -0.0393 16 6 7.5709 -5.6277 -0.4217 17 6 7.0545 -6.3399 -1.4888 18 9 7.6160 -7.5131 -1.8543 19 6 5.9638 -5.8450 -2.1865 20 9 5.4600 -6.5346 -3.2333 21 6 5.3884 -4.6449 -1.8045 22 9 4.3215 -4.1643 -2.4797 23 6 5.9041 -3.9352 -0.7302 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6808 0.8905 26 1 3.8753 -0.6796 -0.8894 27 1 3.6937 -3.0713 0.8252 28 1 6.4162 -1.5627 1.5333 29 1 5.4549 -2.9940 2.0280 30 1 8.2257 -2.8733 0.7947 31 1 7.5749 -4.0317 1.9936 32 1 8.4237 -6.0113 0.1186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336216039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:47 Heat of formation + Delta-G solvation = -125.839300 kcal Electronic energy + Delta-G solvation = -20431.565358 eV Core-core repulsion = 16748.567910 eV Total energy + Delta-G solvation = -3682.997448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.78582 -50.13571 -49.45615 -41.19170 -37.61802 -35.39032 -34.02505 -31.84324 -29.82741 -29.35438 -26.52250 -24.32544 -23.29818 -22.62065 -21.83907 -19.30015 -18.89609 -18.79856 -18.16256 -17.84344 -17.15690 -16.75944 -16.45793 -16.21163 -15.90977 -15.84182 -15.49773 -15.40883 -15.12740 -14.65013 -14.20850 -13.96004 -13.52104 -13.21015 -13.15313 -12.93662 -12.76953 -12.63358 -12.37831 -12.07612 -11.82252 -11.67134 -11.49779 -10.80091 -9.87048 -9.69701 -9.11006 -8.28700 -6.33576 -0.36830 -0.26068 1.36010 1.38438 1.48731 2.04516 2.31578 2.35185 3.01543 3.05581 3.10393 3.25050 3.33209 3.52956 3.89207 3.99412 4.20866 4.33120 4.46133 4.49668 4.57544 4.70513 4.79566 4.89246 5.00784 5.05331 5.15544 5.22358 5.26031 5.53383 5.57798 5.94588 6.56418 6.64784 6.76295 7.31085 8.88621 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.027638 B = 0.005043 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.862376 B = 5551.214571 C = 6298.828934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.239 1.239 7 C -0.527 4.527 8 H 0.030 0.970 9 C 0.181 3.819 10 N -0.688 5.688 11 C 0.117 3.883 12 H 0.092 0.908 13 C -0.143 4.143 14 C -0.064 4.064 15 C -0.032 4.032 16 C -0.108 4.108 17 C 0.097 3.903 18 F -0.123 7.123 19 C -0.001 4.001 20 F -0.135 7.135 21 C 0.106 3.894 22 F -0.132 7.132 23 C -0.115 4.115 24 H 0.267 0.733 25 H 0.002 0.998 26 H 0.020 0.980 27 H 0.341 0.659 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.491 -8.446 3.294 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.162 1.162 7 C -0.566 4.566 8 H 0.048 0.952 9 C 0.053 3.947 10 N -0.318 5.318 11 C 0.007 3.993 12 H 0.110 0.890 13 C -0.182 4.182 14 C -0.101 4.101 15 C -0.033 4.033 16 C -0.126 4.126 17 C 0.077 3.923 18 F -0.101 7.101 19 C -0.022 4.022 20 F -0.114 7.114 21 C 0.086 3.914 22 F -0.110 7.110 23 C -0.117 4.117 24 H 0.076 0.924 25 H 0.020 0.980 26 H 0.038 0.962 27 H 0.160 0.840 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 22.164 -8.472 2.534 23.863 hybrid contribution -0.916 0.506 -0.294 1.086 sum 21.248 -7.966 2.240 22.803 Atomic orbital electron populations 1.70076 1.08429 1.28213 1.52514 1.25951 0.95646 1.03550 0.94136 0.85618 0.79685 0.77944 0.79060 1.19644 1.20788 1.16178 1.21354 0.91771 0.93151 1.50279 0.95185 1.19730 0.93368 0.86545 0.95064 1.60223 1.08485 1.16573 1.46535 1.21233 0.88346 0.92865 0.96832 0.89039 1.23070 0.97756 1.02202 0.95159 1.21146 0.98334 0.94763 0.95877 1.20685 0.92367 0.93733 0.96531 1.20781 1.02518 0.93819 0.95489 1.17219 0.93274 0.84596 0.97234 1.91545 1.83516 1.43990 1.91089 1.17696 0.99201 0.93517 0.91811 1.91489 1.86860 1.78294 1.54730 1.17342 0.87123 0.92783 0.94174 1.91564 1.53248 1.87511 1.78701 1.20823 0.97947 0.98595 0.94348 0.92440 0.98017 0.96172 0.84027 0.88598 0.90326 0.86391 0.86599 0.78964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 2 C 0.00 0.24 5.47 84.65 0.46 0.70 16 3 Si 0.95 43.32 27.47 68.60 1.88 45.20 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 7 C -0.53 -30.75 9.92 25.60 0.25 -30.50 16 8 H 0.03 1.98 8.06 -2.92 -0.02 1.96 16 9 C 0.18 8.33 4.41 85.56 0.38 8.71 16 10 N -0.69 -27.15 6.01 -495.98 -2.98 -30.14 16 11 C 0.12 3.38 3.17 44.84 0.14 3.52 16 12 H 0.09 2.67 7.73 -2.38 -0.02 2.66 16 13 C -0.14 -2.73 6.72 31.50 0.21 -2.52 16 14 C -0.06 -0.76 6.77 30.52 0.21 -0.55 16 15 C -0.03 -0.58 6.14 -19.59 -0.12 -0.70 16 16 C -0.11 -1.69 10.02 22.35 0.22 -1.46 16 17 C 0.10 2.19 7.30 22.37 0.16 2.36 16 18 F -0.12 -2.78 17.19 44.97 0.77 -2.01 16 19 C 0.00 -0.04 7.31 22.41 0.16 0.13 16 20 F -0.13 -4.44 17.10 44.97 0.77 -3.67 16 21 C 0.11 3.48 7.28 22.43 0.16 3.64 16 22 F -0.13 -5.40 16.92 44.97 0.76 -4.64 16 23 C -0.12 -3.13 5.78 -19.54 -0.11 -3.25 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.00 0.09 7.20 -2.39 -0.02 0.08 16 26 H 0.02 0.94 7.37 -2.39 -0.02 0.92 16 27 H 0.34 13.03 8.17 -89.69 -0.73 12.30 16 28 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.08 1.57 7.61 -2.39 -0.02 1.55 16 30 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -72.40 286.59 4.03 -68.37 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.38 Total: 6.80 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 2.14 Total: -19.91 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -2.68 Total: -90.14 kcal Atomic # 9 Polarization: -12.62 SS G_CDS: 2.30 Total: -10.32 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -72.40 4.03 -68.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336216039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.464 kcal (2) G-P(sol) polarization free energy of solvation -72.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds