Wall clock time and date at job start Mon Mar 30 2020 01:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76201 * 103.00025 * 2 1 4 4 C 1.34175 * 125.24153 * 179.97438 * 3 2 1 5 5 C 1.38548 * 114.71029 * 179.97438 * 4 3 2 6 6 C 1.33240 * 114.99030 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.12148 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47362 * 90.00069 * 7 6 5 9 9 C 1.46899 * 111.00252 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46878 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46718 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46904 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00497 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00061 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00004 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00090 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47205 * 60.00032 * 16 14 12 18 18 H 1.48503 * 109.47082 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46889 * 300.00019 * 16 14 12 20 20 S 1.75859 * 109.75592 * 359.75450 * 6 5 4 21 21 H 1.09002 * 109.47124 * 299.99781 * 1 2 3 22 22 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47147 * 59.99866 * 1 2 3 24 24 H 1.08001 * 122.64590 * 359.96619 * 4 3 2 25 25 H 1.08000 * 122.50418 * 179.97438 * 5 4 3 26 26 H 1.08999 * 109.47464 * 209.99589 * 7 6 5 27 27 H 1.08998 * 109.47256 * 330.00083 * 7 6 5 28 28 H 1.00901 * 110.99968 * 56.04253 * 8 7 6 29 29 H 1.08996 * 109.47018 * 299.99660 * 9 8 7 30 30 H 1.08994 * 109.47507 * 59.99817 * 9 8 7 31 31 H 1.09005 * 109.46808 * 299.99080 * 10 9 8 32 32 H 1.08994 * 109.47209 * 59.99624 * 10 9 8 33 33 H 1.09002 * 109.47261 * 299.99175 * 11 10 9 34 34 H 1.08994 * 109.47549 * 59.99879 * 11 10 9 35 35 H 0.96997 * 120.00376 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4523 2.2247 0.0005 5 6 3.5120 3.6089 -0.0002 6 6 2.3297 4.2233 -0.0007 7 6 2.1288 5.7168 -0.0009 8 7 2.0640 6.2021 -1.3860 9 6 1.8688 7.6575 -1.4254 10 6 1.8058 8.1243 -2.8811 11 6 1.6019 9.6401 -2.9221 12 6 1.5405 10.1000 -4.3559 13 1 1.6377 9.3831 -5.1577 14 6 1.3603 11.4363 -4.6441 15 7 1.2425 12.3095 -3.6678 16 14 1.2835 12.0063 -6.4214 17 1 0.1505 11.3352 -7.1079 18 1 1.0857 13.4776 -6.4612 19 1 2.5538 11.6593 -7.1078 20 16 1.0391 3.0288 -0.0074 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 4.3358 1.6035 0.0015 25 1 4.4470 4.1495 0.0005 26 1 1.1981 5.9584 0.5125 27 1 2.9622 6.1956 0.5132 28 1 1.3399 5.7256 -1.9025 29 1 0.9365 7.9128 -0.9217 30 1 2.7006 8.1494 -0.9213 31 1 2.7380 7.8690 -3.3851 32 1 0.9738 7.6323 -3.3847 33 1 0.6696 9.8951 -2.4182 34 1 2.4337 10.1324 -2.4183 35 1 1.1153 13.2495 -3.8705 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336743703.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:36 Heat of formation + Delta-G solvation = 14.369570 kcal Electronic energy + Delta-G solvation = -15216.440828 eV Core-core repulsion = 12659.576856 eV Total energy + Delta-G solvation = -2556.863972 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.18645 -36.29365 -33.63223 -31.76951 -29.89633 -29.37297 -26.74428 -24.97288 -22.97863 -22.13140 -20.26609 -19.87508 -17.76909 -16.46238 -16.27081 -15.52679 -15.22878 -14.75626 -14.38689 -14.16530 -14.08377 -13.83444 -13.53799 -12.99871 -12.56638 -12.43679 -12.33986 -12.06766 -11.59546 -11.41499 -11.07141 -10.81299 -10.60412 -10.58619 -10.54672 -9.84293 -9.69941 -9.32827 -9.06754 -8.70426 -8.33538 -8.26292 -7.62144 -5.98728 -4.00879 0.67092 1.02003 1.09654 1.73554 2.19152 2.53640 3.34640 3.38604 3.41547 4.39818 4.50552 4.63089 4.63819 4.72955 5.11438 5.22338 5.23480 5.37002 5.40397 5.55234 5.76085 5.84142 5.88014 6.07641 6.28641 6.30391 6.69302 6.72142 7.12390 7.24555 7.52122 7.68808 7.83574 8.01468 8.44701 9.06079 9.63043 11.12720 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.040862 B = 0.002621 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.069728 B =10679.284117 C =10900.264536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 S -0.059 6.059 3 C -0.206 4.206 4 C -0.107 4.107 5 C -0.109 4.109 6 C -0.160 4.160 7 C 0.127 3.873 8 N -0.685 5.685 9 C 0.058 3.942 10 C -0.107 4.107 11 C 0.023 3.977 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 S 0.103 5.897 21 H 0.085 0.915 22 H 0.113 0.887 23 H 0.087 0.913 24 H 0.143 0.857 25 H 0.147 0.853 26 H 0.038 0.962 27 H 0.092 0.908 28 H 0.339 0.661 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.014 0.986 34 H 0.016 0.984 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 -23.850 10.957 26.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 S 0.178 5.822 3 C -0.435 4.435 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.280 4.280 7 C -0.004 4.004 8 N -0.316 5.316 9 C -0.070 4.070 10 C -0.145 4.145 11 C -0.015 4.015 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 S 0.364 5.636 21 H 0.104 0.896 22 H 0.131 0.869 23 H 0.106 0.894 24 H 0.160 0.840 25 H 0.164 0.836 26 H 0.056 0.944 27 H 0.111 0.889 28 H 0.156 0.844 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.421 -24.555 10.923 26.878 hybrid contribution -0.307 1.532 -0.706 1.714 sum -0.728 -23.023 10.218 25.199 Atomic orbital electron populations 1.23748 0.94892 1.07475 1.06254 1.85198 1.05929 0.98169 1.92933 1.26023 1.00557 1.00739 1.16150 1.19924 0.95948 0.94863 1.03769 1.20055 0.98566 0.93026 1.02468 1.24423 0.95336 0.98952 1.09317 1.20415 1.01332 0.86962 0.91693 1.60624 1.53532 1.06385 1.11073 1.22176 0.99470 0.85401 0.99938 1.21628 1.00853 0.99603 0.92398 1.19060 0.96944 0.88491 0.97013 1.21222 1.49428 0.92671 0.92487 0.92707 1.25030 0.95392 0.96922 0.97166 1.69953 1.50054 1.02273 1.31370 0.86650 0.78625 0.77441 0.85243 1.20265 1.21306 1.20198 1.84225 1.09459 0.95235 1.74674 0.89556 0.86886 0.89448 0.83976 0.83552 0.94383 0.88946 0.84384 0.95603 0.91172 0.92436 0.93642 0.96810 0.96534 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.84 101.05 0.99 0.02 16 2 S -0.06 -0.53 22.72 -107.50 -2.44 -2.98 16 3 C -0.21 -2.21 6.69 29.30 0.20 -2.02 16 4 C -0.11 -1.15 10.13 -40.90 -0.41 -1.56 16 5 C -0.11 -1.22 10.04 -41.21 -0.41 -1.63 16 6 C -0.16 -1.87 6.01 -36.05 -0.22 -2.09 16 7 C 0.13 1.57 6.17 -4.97 -0.03 1.54 16 8 N -0.68 -10.11 6.49 -115.06 -0.75 -10.85 16 9 C 0.06 1.00 5.69 -3.82 -0.02 0.98 16 10 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 11 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 12 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 16 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 S 0.10 1.11 22.30 -107.50 -2.40 -1.29 16 21 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 22 H 0.11 0.48 8.14 -51.92 -0.42 0.06 16 23 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 25 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.34 4.87 8.72 -39.29 -0.34 4.52 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -30.63 325.63 -10.95 -41.57 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.38 Total: -1.33 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -0.60 Total: -20.42 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.01 Total: -37.34 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -4.84 Total: -4.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.63 -10.95 -41.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336743703.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.944 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds