Wall clock time and date at job start Mon Mar 30 2020 01:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76201 * 103.00025 * 2 1 4 4 C 1.34175 * 125.24153 * 179.97438 * 3 2 1 5 5 C 1.38548 * 114.71029 * 179.97438 * 4 3 2 6 6 C 1.33240 * 114.99030 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.12148 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47362 * 90.00069 * 7 6 5 9 9 C 1.46899 * 111.00252 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46878 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46718 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46904 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00497 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00061 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00004 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00090 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47205 * 60.00032 * 16 14 12 18 18 H 1.48503 * 109.47082 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46889 * 300.00019 * 16 14 12 20 20 S 1.75859 * 109.75592 * 359.75450 * 6 5 4 21 21 H 1.09002 * 109.47124 * 299.99781 * 1 2 3 22 22 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47147 * 59.99866 * 1 2 3 24 24 H 1.08001 * 122.64590 * 359.96619 * 4 3 2 25 25 H 1.08000 * 122.50418 * 179.97438 * 5 4 3 26 26 H 1.08999 * 109.47464 * 209.99589 * 7 6 5 27 27 H 1.08998 * 109.47256 * 330.00083 * 7 6 5 28 28 H 1.00901 * 110.99968 * 56.04253 * 8 7 6 29 29 H 1.08996 * 109.47018 * 299.99660 * 9 8 7 30 30 H 1.08994 * 109.47507 * 59.99817 * 9 8 7 31 31 H 1.09005 * 109.46808 * 299.99080 * 10 9 8 32 32 H 1.08994 * 109.47209 * 59.99624 * 10 9 8 33 33 H 1.09002 * 109.47261 * 299.99175 * 11 10 9 34 34 H 1.08994 * 109.47549 * 59.99879 * 11 10 9 35 35 H 0.96997 * 120.00376 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4523 2.2247 0.0005 5 6 3.5120 3.6089 -0.0002 6 6 2.3297 4.2233 -0.0007 7 6 2.1288 5.7168 -0.0009 8 7 2.0640 6.2021 -1.3860 9 6 1.8688 7.6575 -1.4254 10 6 1.8058 8.1243 -2.8811 11 6 1.6019 9.6401 -2.9221 12 6 1.5405 10.1000 -4.3559 13 1 1.6377 9.3831 -5.1577 14 6 1.3603 11.4363 -4.6441 15 7 1.2425 12.3095 -3.6678 16 14 1.2835 12.0063 -6.4214 17 1 0.1505 11.3352 -7.1079 18 1 1.0857 13.4776 -6.4612 19 1 2.5538 11.6593 -7.1078 20 16 1.0391 3.0288 -0.0074 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 4.3358 1.6035 0.0015 25 1 4.4470 4.1495 0.0005 26 1 1.1981 5.9584 0.5125 27 1 2.9622 6.1956 0.5132 28 1 1.3399 5.7256 -1.9025 29 1 0.9365 7.9128 -0.9217 30 1 2.7006 8.1494 -0.9213 31 1 2.7380 7.8690 -3.3851 32 1 0.9738 7.6323 -3.3847 33 1 0.6696 9.8951 -2.4182 34 1 2.4337 10.1324 -2.4183 35 1 1.1153 13.2495 -3.8705 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336743703.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:35 Heat of formation + Delta-G solvation = -3.290209 kcal Electronic energy + Delta-G solvation = -15217.206614 eV Core-core repulsion = 12659.576856 eV Total energy + Delta-G solvation = -2557.629758 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.08101 -37.57517 -35.52002 -33.47563 -31.09787 -29.97394 -28.27820 -26.31730 -24.29719 -23.44220 -21.97321 -20.74411 -18.70504 -18.40938 -17.30564 -16.64010 -16.57542 -16.11220 -15.74605 -15.31719 -14.84034 -14.82266 -14.41124 -14.26545 -13.86367 -13.64034 -13.43047 -13.27224 -13.05267 -12.94265 -12.61216 -12.47744 -12.27758 -11.93119 -11.53582 -11.41191 -11.29835 -11.16072 -10.59061 -10.54957 -9.54881 -9.42256 -8.36232 -8.20252 -6.31335 -0.17502 0.29343 0.34538 0.91508 1.39960 1.43148 1.51086 1.52382 1.69536 2.41037 3.12729 3.27291 3.77466 4.15399 4.15841 4.20669 4.23860 4.36445 4.43099 4.60331 4.65024 4.71441 4.77410 4.96319 5.03992 5.08364 5.22625 5.24308 5.47389 5.51338 5.74650 5.85614 5.95435 6.26348 6.33989 6.85403 7.37834 8.91395 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.040862 B = 0.002621 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.069728 B =10679.284117 C =10900.264536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.071 6.071 3 C -0.211 4.211 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.180 4.180 7 C 0.131 3.869 8 N -0.686 5.686 9 C 0.072 3.928 10 C -0.093 4.093 11 C 0.026 3.974 12 C -0.545 4.545 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.267 1.267 20 S 0.111 5.889 21 H 0.090 0.910 22 H 0.136 0.864 23 H 0.087 0.913 24 H 0.156 0.844 25 H 0.155 0.845 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.341 0.659 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.049 0.951 33 H -0.008 1.008 34 H -0.007 1.007 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.372 -25.210 10.403 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.167 5.833 3 C -0.440 4.440 4 C -0.158 4.158 5 C -0.141 4.141 6 C -0.300 4.300 7 C 0.000 4.000 8 N -0.318 5.318 9 C -0.057 4.057 10 C -0.131 4.131 11 C -0.012 4.012 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.192 1.192 20 S 0.372 5.628 21 H 0.109 0.891 22 H 0.154 0.846 23 H 0.106 0.894 24 H 0.173 0.827 25 H 0.173 0.827 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.159 0.841 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.010 0.990 34 H 0.011 0.989 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.665 -25.942 10.376 27.948 hybrid contribution -0.254 1.867 -0.486 1.946 sum -0.919 -24.074 9.890 26.043 Atomic orbital electron populations 1.23863 0.92505 1.09097 1.06469 1.85237 1.08569 0.96939 1.92590 1.26320 1.00678 1.01677 1.15302 1.20122 0.96592 0.94905 1.04180 1.20249 0.98817 0.93428 1.01571 1.24373 0.96030 0.98690 1.10943 1.20391 1.01881 0.87581 0.90134 1.60541 1.53629 1.04696 1.12914 1.21872 0.99552 0.87133 0.97141 1.21374 1.00617 0.95964 0.95112 1.18963 0.94790 0.91943 0.95503 1.21682 1.49555 0.93301 0.93773 0.92316 1.25988 0.94756 0.97064 1.02064 1.70084 1.50766 1.02688 1.33840 0.85504 0.79162 0.77054 0.79359 1.19153 1.20733 1.19207 1.84121 1.09141 0.94991 1.74558 0.89121 0.84572 0.89403 0.82680 0.82718 0.93816 0.88381 0.84079 0.95500 0.91271 0.92883 0.93271 0.98982 0.98856 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.84 113.37 1.12 -0.47 16 2 S -0.07 -1.16 22.72 -56.49 -1.28 -2.45 16 3 C -0.21 -4.26 6.69 66.89 0.45 -3.81 16 4 C -0.12 -2.43 10.13 21.42 0.22 -2.21 16 5 C -0.11 -2.29 10.04 21.22 0.21 -2.08 16 6 C -0.18 -4.01 6.01 24.56 0.15 -3.87 16 7 C 0.13 3.07 6.17 85.56 0.53 3.60 16 8 N -0.69 -19.54 6.49 -517.94 -3.36 -22.90 16 9 C 0.07 2.43 5.69 86.30 0.49 2.92 16 10 C -0.09 -3.86 5.41 30.59 0.17 -3.70 16 11 C 0.03 1.37 4.97 29.85 0.15 1.52 16 12 C -0.55 -31.58 9.11 25.60 0.23 -31.35 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 14 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 15 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 16 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 S 0.11 2.24 22.30 -56.49 -1.26 0.98 16 21 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 24 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 25 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.34 9.42 8.72 -89.69 -0.78 8.63 16 29 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 34 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -64.92 325.63 0.86 -64.06 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.28 Total: 9.69 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 4.17 Total: -39.04 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -3.08 Total: -79.96 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.54 Total: -1.47 kcal Total: -64.92 0.86 -64.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336743703.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.772 kcal (2) G-P(sol) polarization free energy of solvation -64.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds