Wall clock time and date at job start Mon Mar 30 2020 00:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35996 * 116.99918 * 2 1 4 4 C 1.33711 * 125.88272 * 179.97438 * 3 2 1 5 5 N 1.32151 * 115.64896 * 179.97438 * 4 3 2 6 6 C 1.29682 * 117.01449 * 359.97438 * 5 4 3 7 7 N 1.39205 * 125.40687 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99554 * 0.02562 * 7 6 5 9 9 O 1.21588 * 120.00178 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99964 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.73002 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.47325 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99792 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00025 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00011 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00044 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47644 * 89.99599 * 17 15 13 19 19 H 1.48501 * 109.47120 * 209.99938 * 17 15 13 20 20 H 1.48499 * 109.46888 * 329.99550 * 17 15 13 21 21 S 1.76149 * 109.19597 * 0.22907 * 6 5 4 22 22 H 1.09006 * 109.47448 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47281 * 300.00380 * 1 2 3 24 24 H 1.09007 * 109.47224 * 60.00053 * 1 2 3 25 25 H 1.08005 * 122.17931 * 359.97438 * 4 3 2 26 26 H 0.96996 * 120.00559 * 180.02562 * 7 6 5 27 27 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 28 28 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 29 29 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 30 30 H 1.09007 * 109.46593 * 299.99743 * 12 11 10 31 31 H 1.08993 * 109.47372 * 59.99485 * 12 11 10 32 32 H 0.97000 * 120.00268 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.3675 1.4182 0.0005 5 7 3.7487 2.6836 -0.0002 6 6 2.8124 3.5808 -0.0017 7 7 3.0151 4.9580 -0.0021 8 6 4.2680 5.4547 -0.0013 9 8 5.2212 4.6998 -0.0008 10 7 4.4644 6.7881 -0.0011 11 6 5.8262 7.3279 0.0057 12 6 5.7688 8.8569 0.0050 13 6 7.1697 9.4122 0.0114 14 1 8.0164 8.7417 0.0159 15 6 7.3706 10.7763 0.0114 16 7 8.5931 11.2609 0.0175 17 14 5.9062 11.9360 0.0043 18 1 5.5119 12.2441 1.4024 19 1 6.2739 13.1934 -0.6949 20 1 4.7685 11.2923 -0.7004 21 16 1.2432 2.7805 0.0042 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 4.0769 0.6039 0.0013 26 1 2.2547 5.5602 -0.0029 27 1 3.7039 7.3903 -0.0012 28 1 6.3486 6.9848 0.8987 29 1 6.3581 6.9835 -0.8813 30 1 5.2462 9.2004 -0.8878 31 1 5.2371 9.2009 0.8921 32 1 8.7344 12.2205 0.0179 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351790301.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:25 Heat of formation + Delta-G solvation = -4.402032 kcal Electronic energy + Delta-G solvation = -17480.384898 eV Core-core repulsion = 14376.413713 eV Total energy + Delta-G solvation = -3103.971185 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.49432 -39.54842 -38.31062 -35.28249 -34.57489 -32.80162 -30.34923 -29.44015 -27.10475 -25.48699 -24.24587 -22.15128 -20.84740 -19.95368 -19.64048 -18.29855 -17.29406 -16.81341 -16.42010 -16.28014 -15.64623 -15.06586 -14.53991 -14.30482 -14.21605 -14.12291 -13.73164 -13.35808 -12.70759 -12.62357 -12.08982 -11.51461 -11.49424 -11.26088 -10.57292 -10.45014 -10.35370 -10.14441 -9.96035 -9.48661 -9.47412 -9.32483 -8.69643 -8.59852 -7.95918 -6.11882 -4.12290 0.44926 0.62853 1.03245 2.49912 2.70606 2.89004 3.23981 3.31264 3.32645 3.44956 4.03281 4.36312 4.57395 4.64654 4.71915 4.96631 5.20802 5.29714 5.64206 5.93267 6.15065 6.19710 6.43186 6.53686 6.63308 6.70993 7.13630 7.20907 7.64015 7.65510 8.06923 8.43159 8.67997 8.92877 9.47736 11.01125 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.061558 B = 0.003013 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.745710 B = 9290.299359 C = 9719.284828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.273 6.273 3 C -0.029 4.029 4 C 0.021 3.979 5 N -0.437 5.437 6 C 0.323 3.677 7 N -0.644 5.644 8 C 0.692 3.308 9 O -0.529 6.529 10 N -0.733 5.733 11 C 0.148 3.852 12 C -0.021 4.021 13 C -0.523 4.523 14 H 0.077 0.923 15 C 0.069 3.931 16 N -0.897 5.897 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 S 0.030 5.970 22 H 0.109 0.891 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.183 0.817 26 H 0.417 0.583 27 H 0.393 0.607 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.018 0.982 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.834 -17.845 -0.061 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.186 6.186 3 C -0.195 4.195 4 C -0.128 4.128 5 N -0.157 5.157 6 C -0.049 4.049 7 N -0.299 5.299 8 C 0.389 3.611 9 O -0.400 6.400 10 N -0.388 5.388 11 C 0.025 3.975 12 C -0.059 4.059 13 C -0.561 4.561 14 H 0.095 0.905 15 C -0.133 4.133 16 N -0.536 5.536 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 S 0.274 5.726 22 H 0.127 0.873 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.200 0.800 26 H 0.253 0.747 27 H 0.226 0.774 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.110 -17.994 -0.058 27.738 hybrid contribution -1.202 0.837 0.014 1.465 sum -22.312 -17.157 -0.044 28.146 Atomic orbital electron populations 1.23280 0.77461 1.04841 1.01871 1.85995 1.21267 1.21382 1.89990 1.24594 0.94621 0.87359 1.12888 1.21217 0.91523 0.93376 1.06687 1.66764 1.31322 0.98828 1.18805 1.23605 0.89141 0.88834 1.03346 1.42276 1.09372 1.01755 1.76498 1.16045 0.82193 0.83573 0.79248 1.91063 1.38593 1.56952 1.53396 1.45546 1.11320 1.03536 1.78380 1.21496 0.78609 0.95402 1.01952 1.19806 0.99121 0.90100 0.96893 1.20900 0.90966 0.92539 1.51729 0.90504 1.25000 0.95709 0.98199 0.94388 1.69899 1.20195 1.13167 1.50308 0.86744 0.83314 0.80481 0.78465 1.20246 1.21291 1.19104 1.84999 1.09610 1.00365 1.77587 0.87283 0.92300 0.92284 0.80005 0.74655 0.77361 0.91762 0.91699 0.95930 0.96371 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.31 101.05 1.04 1.16 16 2 O -0.27 -2.60 10.58 -19.73 -0.21 -2.81 16 3 C -0.03 -0.32 7.31 29.14 0.21 -0.11 16 4 C 0.02 0.27 11.28 -19.00 -0.21 0.06 16 5 N -0.44 -7.00 8.70 -13.67 -0.12 -7.12 16 6 C 0.32 4.34 8.29 -87.10 -0.72 3.62 16 7 N -0.64 -8.06 5.42 -16.14 -0.09 -8.15 16 8 C 0.69 11.64 8.53 -86.91 -0.74 10.89 16 9 O -0.53 -11.40 15.01 5.29 0.08 -11.32 16 10 N -0.73 -11.61 5.56 -65.22 -0.36 -11.97 16 11 C 0.15 2.95 5.61 -4.04 -0.02 2.93 16 12 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 16 13 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 14 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 17 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 21 S 0.03 0.29 22.34 -107.50 -2.40 -2.12 16 22 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 24 H 0.06 0.28 8.09 -51.92 -0.42 -0.14 16 25 H 0.18 2.04 8.06 -52.48 -0.42 1.62 16 26 H 0.42 3.36 8.83 -40.82 -0.36 3.00 16 27 H 0.39 4.85 8.49 -40.82 -0.35 4.50 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 31 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 297.46 15.07 4.48 4.48 Total: -1.00 -35.21 297.46 -7.10 -42.31 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.59 Total: 2.00 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.99 Total: 5.03 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.20 Total: -53.61 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.13 Total: -14.13 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.40 Total: -2.12 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.21 -7.10 -42.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351790301.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.905 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds