Wall clock time and date at job start Mon Mar 30 2020 00:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35996 * 116.99918 * 2 1 4 4 C 1.33711 * 125.88272 * 179.97438 * 3 2 1 5 5 N 1.32151 * 115.64896 * 179.97438 * 4 3 2 6 6 C 1.29682 * 117.01449 * 359.97438 * 5 4 3 7 7 N 1.39205 * 125.40687 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99554 * 0.02562 * 7 6 5 9 9 O 1.21588 * 120.00178 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99964 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.73002 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.47325 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99792 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00025 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00011 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00044 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47644 * 89.99599 * 17 15 13 19 19 H 1.48501 * 109.47120 * 209.99938 * 17 15 13 20 20 H 1.48499 * 109.46888 * 329.99550 * 17 15 13 21 21 S 1.76149 * 109.19597 * 0.22907 * 6 5 4 22 22 H 1.09006 * 109.47448 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47281 * 300.00380 * 1 2 3 24 24 H 1.09007 * 109.47224 * 60.00053 * 1 2 3 25 25 H 1.08005 * 122.17931 * 359.97438 * 4 3 2 26 26 H 0.96996 * 120.00559 * 180.02562 * 7 6 5 27 27 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 28 28 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 29 29 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 30 30 H 1.09007 * 109.46593 * 299.99743 * 12 11 10 31 31 H 1.08993 * 109.47372 * 59.99485 * 12 11 10 32 32 H 0.97000 * 120.00268 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.3675 1.4182 0.0005 5 7 3.7487 2.6836 -0.0002 6 6 2.8124 3.5808 -0.0017 7 7 3.0151 4.9580 -0.0021 8 6 4.2680 5.4547 -0.0013 9 8 5.2212 4.6998 -0.0008 10 7 4.4644 6.7881 -0.0011 11 6 5.8262 7.3279 0.0057 12 6 5.7688 8.8569 0.0050 13 6 7.1697 9.4122 0.0114 14 1 8.0164 8.7417 0.0159 15 6 7.3706 10.7763 0.0114 16 7 8.5931 11.2609 0.0175 17 14 5.9062 11.9360 0.0043 18 1 5.5119 12.2441 1.4024 19 1 6.2739 13.1934 -0.6949 20 1 4.7685 11.2923 -0.7004 21 16 1.2432 2.7805 0.0042 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 4.0769 0.6039 0.0013 26 1 2.2547 5.5602 -0.0029 27 1 3.7039 7.3903 -0.0012 28 1 6.3486 6.9848 0.8987 29 1 6.3581 6.9835 -0.8813 30 1 5.2462 9.2004 -0.8878 31 1 5.2371 9.2009 0.8921 32 1 8.7344 12.2205 0.0179 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351790301.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:25 Heat of formation + Delta-G solvation = -32.224546 kcal Electronic energy + Delta-G solvation = -17481.591373 eV Core-core repulsion = 14376.413713 eV Total energy + Delta-G solvation = -3105.177659 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.63513 -40.51265 -39.21794 -36.76876 -35.85058 -34.76665 -32.05155 -30.35697 -27.87450 -26.93725 -25.48943 -23.37211 -22.56474 -21.05921 -20.62368 -19.40699 -18.91168 -18.16430 -17.23499 -17.19499 -16.79445 -16.37848 -16.09486 -15.56797 -15.45083 -15.37040 -14.86932 -14.71156 -14.56677 -13.33126 -13.21989 -13.08006 -12.74102 -12.27242 -12.17638 -12.14974 -11.73647 -11.67773 -11.51458 -11.44597 -10.76444 -10.52381 -10.26972 -10.11438 -8.88990 -8.27308 -6.34862 -0.43831 -0.29220 0.15418 1.41685 1.44750 1.46003 1.55913 1.67505 2.16382 2.21547 2.39600 2.93560 3.07915 3.71779 4.16528 4.27089 4.34794 4.41772 4.46372 4.66987 4.73320 4.78030 5.09067 5.18420 5.41423 5.44221 5.57503 5.65811 5.83961 6.24940 6.62614 6.73505 7.03710 7.29385 7.44003 8.89594 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.061558 B = 0.003013 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.745710 B = 9290.299359 C = 9719.284828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.283 6.283 3 C -0.019 4.019 4 C -0.014 4.014 5 N -0.485 5.485 6 C 0.281 3.719 7 N -0.626 5.626 8 C 0.695 3.305 9 O -0.584 6.584 10 N -0.718 5.718 11 C 0.164 3.836 12 C -0.011 4.011 13 C -0.539 4.539 14 H 0.028 0.972 15 C 0.002 3.998 16 N -0.952 5.952 17 Si 0.962 3.038 18 H -0.265 1.265 19 H -0.289 1.289 20 H -0.233 1.233 21 S 0.134 5.866 22 H 0.135 0.865 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.184 0.816 26 H 0.439 0.561 27 H 0.415 0.585 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.633 -17.811 -0.085 32.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.196 6.196 3 C -0.186 4.186 4 C -0.162 4.162 5 N -0.206 5.206 6 C -0.090 4.090 7 N -0.283 5.283 8 C 0.392 3.608 9 O -0.458 6.458 10 N -0.375 5.375 11 C 0.040 3.960 12 C -0.049 4.049 13 C -0.578 4.578 14 H 0.046 0.954 15 C -0.195 4.195 16 N -0.592 5.592 17 Si 0.784 3.216 18 H -0.190 1.190 19 H -0.215 1.215 20 H -0.155 1.155 21 S 0.378 5.622 22 H 0.153 0.847 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.201 0.799 26 H 0.280 0.720 27 H 0.252 0.748 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.018 -17.981 -0.083 31.627 hybrid contribution 0.219 0.610 0.025 0.649 sum -25.799 -17.371 -0.058 31.102 Atomic orbital electron populations 1.23683 0.75081 1.07103 1.02863 1.86018 1.23645 1.20662 1.89311 1.24821 0.94726 0.89019 1.10016 1.21236 0.92889 0.92837 1.09265 1.66682 1.34209 1.00260 1.19461 1.23867 0.91505 0.88676 1.04905 1.41830 1.08495 1.02160 1.75790 1.16123 0.82958 0.83183 0.78544 1.91035 1.40906 1.58242 1.55631 1.45060 1.10367 1.03817 1.78240 1.20965 0.80568 0.94346 1.00119 1.19653 0.95934 0.90920 0.98402 1.21256 0.92560 0.92454 1.51491 0.95409 1.26117 0.99353 1.00359 0.93700 1.70083 1.23343 1.13772 1.52045 0.85505 0.79520 0.77307 0.79308 1.19017 1.21542 1.15535 1.84556 1.04716 0.97250 1.75673 0.84689 0.91210 0.91189 0.79906 0.72004 0.74800 0.93795 0.93771 0.94111 0.94246 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 10.31 113.37 1.17 1.23 16 2 O -0.28 -4.73 10.58 -93.51 -0.99 -5.72 16 3 C -0.02 -0.39 7.31 66.79 0.49 0.10 16 4 C -0.01 -0.36 11.28 83.62 0.94 0.58 16 5 N -0.48 -15.77 8.70 -197.17 -1.72 -17.48 16 6 C 0.28 7.23 8.29 179.12 1.49 8.71 16 7 N -0.63 -14.67 5.42 -323.24 -1.75 -16.42 16 8 C 0.69 23.09 8.53 179.05 1.53 24.62 16 9 O -0.58 -25.97 15.01 -3.99 -0.06 -26.03 16 10 N -0.72 -21.78 5.56 -478.52 -2.66 -24.44 16 11 C 0.16 6.63 5.61 86.38 0.48 7.11 16 12 C -0.01 -0.48 4.16 29.85 0.12 -0.36 16 13 C -0.54 -30.54 9.66 25.60 0.25 -30.29 16 14 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 15 C 0.00 0.09 5.47 84.65 0.46 0.55 16 16 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 17 Si 0.96 41.53 27.47 68.60 1.88 43.41 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 19 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.23 -8.73 6.54 99.48 0.65 -8.08 16 21 S 0.13 2.11 22.34 -56.49 -1.26 0.84 16 22 H 0.14 0.33 8.14 -2.38 -0.02 0.31 16 23 H 0.07 0.39 8.08 -2.39 -0.02 0.37 16 24 H 0.07 0.39 8.09 -2.38 -0.02 0.37 16 25 H 0.18 4.36 8.06 -2.91 -0.02 4.34 16 26 H 0.44 5.74 8.83 -92.71 -0.82 4.92 16 27 H 0.41 8.90 8.49 -92.71 -0.79 8.12 16 28 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.04 1.63 7.20 -2.38 -0.02 1.61 16 31 H 0.04 1.56 7.57 -2.39 -0.02 1.54 16 32 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -81.13 297.46 0.19 -80.94 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -0.49 Total: 11.74 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 6.93 Total: 12.24 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -5.83 Total: -117.43 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.05 Total: -31.75 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.88 Total: 43.41 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.26 Total: 0.84 kcal Total: -81.13 0.19 -80.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351790301.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.719 kcal (2) G-P(sol) polarization free energy of solvation -81.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds