Wall clock time and date at job start Mon Mar 30 2020 00:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35996 * 116.99918 * 2 1 4 4 C 1.33711 * 125.88272 * 179.97438 * 3 2 1 5 5 N 1.32151 * 115.64896 * 179.97438 * 4 3 2 6 6 C 1.29682 * 117.01449 * 359.97438 * 5 4 3 7 7 N 1.39205 * 125.40687 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99554 * 0.02562 * 7 6 5 9 9 O 1.21588 * 120.00178 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99964 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99635 * 0.02562 * 10 8 7 12 12 C 1.46493 * 119.99864 * 179.73002 * 10 8 7 13 13 C 1.50702 * 109.47427 * 89.99800 * 12 10 8 14 14 H 1.07999 * 119.99972 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99945 * 179.97438 * 13 12 10 16 16 N 1.31519 * 120.00264 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99887 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46951 * 89.99923 * 17 15 13 19 19 H 1.48499 * 109.47146 * 210.00270 * 17 15 13 20 20 H 1.48501 * 109.47153 * 330.00084 * 17 15 13 21 21 S 1.76149 * 109.19597 * 0.22907 * 6 5 4 22 22 H 1.09007 * 109.47224 * 60.00053 * 1 2 3 23 23 H 1.09006 * 109.47448 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47281 * 300.00380 * 1 2 3 25 25 H 1.08005 * 122.17931 * 359.97438 * 4 3 2 26 26 H 0.96996 * 120.00559 * 180.02562 * 7 6 5 27 27 H 1.08995 * 109.47693 * 90.00207 * 11 10 8 28 28 H 1.09003 * 109.47006 * 210.00121 * 11 10 8 29 29 H 1.09004 * 109.47665 * 329.99813 * 11 10 8 30 30 H 1.09002 * 109.47192 * 209.99937 * 12 10 8 31 31 H 1.08996 * 109.47342 * 329.99648 * 12 10 8 32 32 H 0.96991 * 120.00123 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.3675 1.4182 0.0005 5 7 3.7487 2.6836 -0.0002 6 6 2.8124 3.5808 -0.0017 7 7 3.0151 4.9580 -0.0021 8 6 4.2680 5.4547 -0.0013 9 8 5.2212 4.6998 -0.0008 10 7 4.4644 6.7881 -0.0011 11 6 3.3159 7.6975 -0.0012 12 6 5.8262 7.3279 0.0057 13 6 6.3008 7.5121 -1.4128 14 1 5.6525 7.2533 -2.2369 15 6 7.5620 8.0119 -1.6583 16 7 8.3513 8.3275 -0.6547 17 14 8.1500 8.2408 -3.4166 18 1 7.7894 9.6029 -3.8857 19 1 9.6244 8.0725 -3.4714 20 1 7.5035 7.2291 -4.2905 21 16 1.2432 2.7805 0.0042 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 4.0769 0.6039 0.0013 26 1 2.2547 5.5602 -0.0029 27 1 3.0308 7.9231 1.0263 28 1 3.5836 8.6209 -0.5150 29 1 2.4785 7.2255 -0.5153 30 1 5.8333 8.2895 0.5189 31 1 6.4892 6.6349 0.5235 32 1 9.2387 8.6787 -0.8275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351806566.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:13 Heat of formation + Delta-G solvation = 11.159135 kcal Electronic energy + Delta-G solvation = -18156.910732 eV Core-core repulsion = 15053.614330 eV Total energy + Delta-G solvation = -3103.296402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.20071 -39.30748 -38.07192 -34.97028 -34.36894 -32.50480 -29.46468 -27.89694 -26.90113 -25.93147 -24.55070 -22.92951 -21.17481 -19.45064 -19.01980 -17.57606 -16.93010 -16.54285 -16.19926 -15.95320 -15.16903 -15.02213 -14.53004 -14.08770 -13.96516 -13.78351 -13.08896 -12.73915 -12.54108 -12.20734 -11.94706 -11.80709 -11.28848 -11.20288 -10.90880 -10.57743 -10.20986 -10.12925 -9.85263 -9.61247 -9.26695 -9.01243 -8.42000 -7.87373 -7.56796 -6.02894 -4.07556 0.69980 0.88117 1.26219 2.83494 2.98488 3.14495 3.31936 3.39167 3.44449 3.92238 4.22435 4.47896 4.72835 4.79455 4.89098 5.10180 5.31481 5.41961 5.52004 5.79319 5.88240 6.06096 6.40873 6.54443 6.76742 7.22239 7.45617 7.53504 7.92383 7.99962 8.23153 8.49539 8.92882 9.19569 9.57667 11.05114 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034376 B = 0.004093 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.324001 B = 6838.508901 C = 7180.063403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.275 6.275 3 C -0.036 4.036 4 C 0.026 3.974 5 N -0.439 5.439 6 C 0.333 3.667 7 N -0.646 5.646 8 C 0.691 3.309 9 O -0.520 6.520 10 N -0.610 5.610 11 C 0.081 3.919 12 C 0.261 3.739 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.274 1.274 21 S 0.016 5.984 22 H 0.057 0.943 23 H 0.107 0.893 24 H 0.057 0.943 25 H 0.181 0.819 26 H 0.412 0.588 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.576 -9.652 2.500 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.188 6.188 3 C -0.202 4.202 4 C -0.123 4.123 5 N -0.159 5.159 6 C -0.039 4.039 7 N -0.303 5.303 8 C 0.389 3.611 9 O -0.389 6.389 10 N -0.347 5.347 11 C -0.063 4.063 12 C 0.142 3.858 13 C -0.567 4.567 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 S 0.260 5.740 22 H 0.076 0.924 23 H 0.125 0.875 24 H 0.076 0.924 25 H 0.198 0.802 26 H 0.251 0.749 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.956 -9.724 2.555 21.457 hybrid contribution 0.147 0.028 -1.029 1.040 sum -18.809 -9.696 1.526 21.216 Atomic orbital electron populations 1.23243 0.77726 1.04584 1.01788 1.85978 1.21063 1.21515 1.90234 1.24512 0.94545 0.87155 1.13953 1.21237 0.91421 0.93485 1.06160 1.66801 1.31070 0.98723 1.19340 1.23716 0.88704 0.89163 1.02336 1.42670 1.09854 1.01374 1.76413 1.15968 0.81761 0.83658 0.79691 1.91041 1.38322 1.56409 1.53153 1.47531 1.09657 1.02000 1.75497 1.21633 0.88352 0.95779 1.00528 1.19293 0.74744 0.94184 0.97617 1.21449 1.00091 1.42787 0.92347 0.92428 1.24923 0.96308 0.95370 0.97445 1.69926 1.08966 1.43863 1.30608 0.86485 0.78002 0.78242 0.84624 1.20680 1.21053 1.19898 1.84883 1.10365 1.00660 1.78125 0.92392 0.87491 0.92421 0.80168 0.74903 0.93448 0.89986 0.93334 0.94543 0.93528 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.31 101.05 1.04 1.21 16 2 O -0.27 -3.13 10.58 -19.73 -0.21 -3.34 16 3 C -0.04 -0.48 7.31 29.14 0.21 -0.27 16 4 C 0.03 0.41 11.28 -19.00 -0.21 0.19 16 5 N -0.44 -8.42 8.70 -13.67 -0.12 -8.54 16 6 C 0.33 5.55 8.29 -87.10 -0.72 4.83 16 7 N -0.65 -10.72 5.28 -16.14 -0.09 -10.80 16 8 C 0.69 15.11 8.24 -86.91 -0.72 14.39 16 9 O -0.52 -13.99 14.59 5.29 0.08 -13.91 16 10 N -0.61 -12.90 2.86 -188.75 -0.54 -13.44 16 11 C 0.08 1.20 10.20 59.84 0.61 1.81 16 12 C 0.26 6.80 5.16 -5.20 -0.03 6.77 16 13 C -0.53 -15.02 9.39 -34.44 -0.32 -15.35 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 17 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 21 S 0.02 0.19 22.34 -107.50 -2.40 -2.21 16 22 H 0.06 0.38 8.09 -51.92 -0.42 -0.04 16 23 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 25 H 0.18 2.46 8.06 -52.48 -0.42 2.04 16 26 H 0.41 5.04 6.55 -40.82 -0.27 4.77 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.24 8.07 -51.93 -0.42 0.83 16 29 H 0.05 0.55 6.36 -51.93 -0.33 0.22 16 30 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 31 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 297.25 15.07 4.48 4.48 Total: -1.00 -35.90 297.25 -6.79 -42.69 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.47 Total: -1.32 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: -0.23 Total: 15.27 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.01 Total: -58.70 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.13 Total: -17.25 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.40 Total: -2.21 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.90 -6.79 -42.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351806566.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.849 kcal (2) G-P(sol) polarization free energy of solvation -35.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds