Wall clock time and date at job start Mon Mar 30 2020 00:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35996 * 116.99918 * 2 1 4 4 C 1.33711 * 125.88272 * 179.97438 * 3 2 1 5 5 N 1.32151 * 115.64896 * 179.97438 * 4 3 2 6 6 C 1.29682 * 117.01449 * 359.97438 * 5 4 3 7 7 N 1.39205 * 125.40687 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99554 * 0.02562 * 7 6 5 9 9 O 1.21588 * 120.00178 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99964 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99635 * 0.02562 * 10 8 7 12 12 C 1.46493 * 119.99864 * 179.73002 * 10 8 7 13 13 C 1.50702 * 109.47427 * 89.99800 * 12 10 8 14 14 H 1.07999 * 119.99972 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99945 * 179.97438 * 13 12 10 16 16 N 1.31519 * 120.00264 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99887 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46951 * 89.99923 * 17 15 13 19 19 H 1.48499 * 109.47146 * 210.00270 * 17 15 13 20 20 H 1.48501 * 109.47153 * 330.00084 * 17 15 13 21 21 S 1.76149 * 109.19597 * 0.22907 * 6 5 4 22 22 H 1.09007 * 109.47224 * 60.00053 * 1 2 3 23 23 H 1.09006 * 109.47448 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47281 * 300.00380 * 1 2 3 25 25 H 1.08005 * 122.17931 * 359.97438 * 4 3 2 26 26 H 0.96996 * 120.00559 * 180.02562 * 7 6 5 27 27 H 1.08995 * 109.47693 * 90.00207 * 11 10 8 28 28 H 1.09003 * 109.47006 * 210.00121 * 11 10 8 29 29 H 1.09004 * 109.47665 * 329.99813 * 11 10 8 30 30 H 1.09002 * 109.47192 * 209.99937 * 12 10 8 31 31 H 1.08996 * 109.47342 * 329.99648 * 12 10 8 32 32 H 0.96991 * 120.00123 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.3675 1.4182 0.0005 5 7 3.7487 2.6836 -0.0002 6 6 2.8124 3.5808 -0.0017 7 7 3.0151 4.9580 -0.0021 8 6 4.2680 5.4547 -0.0013 9 8 5.2212 4.6998 -0.0008 10 7 4.4644 6.7881 -0.0011 11 6 3.3159 7.6975 -0.0012 12 6 5.8262 7.3279 0.0057 13 6 6.3008 7.5121 -1.4128 14 1 5.6525 7.2533 -2.2369 15 6 7.5620 8.0119 -1.6583 16 7 8.3513 8.3275 -0.6547 17 14 8.1500 8.2408 -3.4166 18 1 7.7894 9.6029 -3.8857 19 1 9.6244 8.0725 -3.4714 20 1 7.5035 7.2291 -4.2905 21 16 1.2432 2.7805 0.0042 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 4.0769 0.6039 0.0013 26 1 2.2547 5.5602 -0.0029 27 1 3.0308 7.9231 1.0263 28 1 3.5836 8.6209 -0.5150 29 1 2.4785 7.2255 -0.5153 30 1 5.8333 8.2895 0.5189 31 1 6.4892 6.6349 0.5235 32 1 9.2387 8.6787 -0.8275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351806566.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:12 Heat of formation + Delta-G solvation = -15.414260 kcal Electronic energy + Delta-G solvation = -18158.063041 eV Core-core repulsion = 15053.614330 eV Total energy + Delta-G solvation = -3104.448711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.61255 -40.49880 -39.19560 -36.67020 -35.91064 -34.57318 -30.58918 -29.67447 -27.85269 -27.30054 -25.99377 -24.63341 -22.60582 -20.66078 -20.30317 -18.94762 -18.66293 -18.15464 -17.15927 -17.12201 -16.77320 -16.60397 -16.01937 -15.42343 -15.19839 -15.05015 -14.69001 -14.29738 -13.86045 -13.48129 -13.21411 -13.14744 -12.83741 -12.70678 -12.51932 -12.25679 -12.19312 -11.73553 -11.45027 -11.39915 -10.61722 -10.42549 -10.25704 -9.52228 -8.83505 -8.20127 -6.34728 -0.41390 -0.26422 0.16586 1.37256 1.41183 1.50399 1.59570 1.74046 2.18072 2.31893 2.42517 2.86485 3.09444 3.67107 4.18265 4.28388 4.29200 4.43657 4.65936 4.67427 4.73006 4.84866 4.98592 5.21040 5.25431 5.53826 5.62689 5.82093 5.90456 6.07378 6.69357 6.74126 7.07313 7.32152 7.60311 8.86463 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034376 B = 0.004093 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.324001 B = 6838.508901 C = 7180.063403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.282 6.282 3 C -0.020 4.020 4 C -0.013 4.013 5 N -0.490 5.490 6 C 0.282 3.718 7 N -0.629 5.629 8 C 0.689 3.311 9 O -0.584 6.584 10 N -0.616 5.616 11 C 0.074 3.926 12 C 0.277 3.723 13 C -0.543 4.543 14 H 0.052 0.948 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.260 1.260 19 H -0.282 1.282 20 H -0.277 1.277 21 S 0.134 5.866 22 H 0.069 0.931 23 H 0.136 0.864 24 H 0.070 0.930 25 H 0.183 0.817 26 H 0.433 0.567 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.035 0.965 31 H -0.002 1.002 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.980 -9.890 1.615 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.195 6.195 3 C -0.186 4.186 4 C -0.161 4.161 5 N -0.212 5.212 6 C -0.088 4.088 7 N -0.288 5.288 8 C 0.387 3.613 9 O -0.459 6.459 10 N -0.352 5.352 11 C -0.068 4.068 12 C 0.155 3.845 13 C -0.582 4.582 14 H 0.070 0.930 15 C -0.191 4.191 16 N -0.567 5.567 17 Si 0.792 3.208 18 H -0.185 1.185 19 H -0.207 1.207 20 H -0.202 1.202 21 S 0.378 5.622 22 H 0.087 0.913 23 H 0.154 0.846 24 H 0.088 0.912 25 H 0.200 0.800 26 H 0.276 0.724 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.053 0.947 31 H 0.016 0.984 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.480 -9.951 1.676 24.641 hybrid contribution 0.978 -0.080 -0.699 1.205 sum -21.503 -10.030 0.977 23.747 Atomic orbital electron populations 1.23687 0.75089 1.07099 1.02867 1.86013 1.23656 1.20481 1.89390 1.24758 0.94582 0.88971 1.10298 1.21240 0.92972 0.92734 1.09199 1.66698 1.34388 1.00399 1.19687 1.23958 0.91597 0.88708 1.04538 1.42102 1.08476 1.02142 1.76048 1.16128 0.82751 0.83341 0.79036 1.90989 1.40968 1.58030 1.55872 1.47376 1.09603 1.02905 1.75359 1.21984 0.87070 0.94737 1.03027 1.18733 0.76985 0.92741 0.96033 1.21720 1.00565 1.42770 0.93141 0.92984 1.25827 0.96415 0.94960 1.01850 1.70042 1.09379 1.44497 1.32814 0.85424 0.77329 0.78892 0.79184 1.18492 1.20705 1.20195 1.84361 1.04623 0.97258 1.75945 0.91260 0.84588 0.91171 0.79986 0.72428 0.90506 0.90382 0.89446 0.94686 0.98355 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 10.31 113.37 1.17 1.25 16 2 O -0.28 -5.65 10.58 -93.51 -0.99 -6.64 16 3 C -0.02 -0.48 7.31 66.79 0.49 0.01 16 4 C -0.01 -0.41 11.28 83.62 0.94 0.53 16 5 N -0.49 -19.42 8.70 -197.17 -1.72 -21.14 16 6 C 0.28 9.26 8.29 179.12 1.49 10.75 16 7 N -0.63 -20.47 5.28 -323.24 -1.71 -22.17 16 8 C 0.69 30.98 8.24 179.05 1.48 32.46 16 9 O -0.58 -33.34 14.59 -3.99 -0.06 -33.39 16 10 N -0.62 -26.48 2.86 -869.33 -2.48 -28.97 16 11 C 0.07 2.05 10.20 127.77 1.30 3.35 16 12 C 0.28 15.07 5.16 85.64 0.44 15.51 16 13 C -0.54 -31.77 9.39 25.60 0.24 -31.53 16 14 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 15 C 0.01 0.50 5.46 84.65 0.46 0.96 16 16 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 17 Si 0.97 45.71 29.54 68.60 2.03 47.73 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 21 S 0.13 2.75 22.34 -56.49 -1.26 1.48 16 22 H 0.07 0.59 8.09 -2.38 -0.02 0.57 16 23 H 0.14 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.07 0.57 8.08 -2.39 -0.02 0.56 16 25 H 0.18 5.28 8.06 -2.91 -0.02 5.26 16 26 H 0.43 9.54 6.55 -92.71 -0.61 8.93 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 2.26 8.07 -2.39 -0.02 2.24 16 29 H 0.09 1.72 6.36 -2.38 -0.02 1.71 16 30 H 0.04 1.89 8.07 -2.39 -0.02 1.87 16 31 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 32 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -83.41 297.25 2.65 -80.76 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 0.55 Total: 5.42 kcal Atomic # 6 Polarization: 25.28 SS G_CDS: 8.01 Total: 33.29 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -5.62 Total: -128.65 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.05 Total: -40.04 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.26 Total: 1.48 kcal Total: -83.41 2.65 -80.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351806566.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.347 kcal (2) G-P(sol) polarization free energy of solvation -83.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds