Wall clock time and date at job start Mon Mar 30 2020 00:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 120.00111 * 2 1 4 4 H 1.08001 * 120.00123 * 202.37620 * 3 2 1 5 5 C 1.38818 * 120.00202 * 22.37636 * 3 2 1 6 6 N 1.31617 * 119.99920 * 11.32710 * 5 3 2 7 7 Si 1.86793 * 120.00183 * 191.32696 * 5 3 2 8 8 H 1.48503 * 109.47276 * 89.99724 * 7 5 3 9 9 H 1.48501 * 109.47362 * 209.99981 * 7 5 3 10 10 H 1.48503 * 109.47330 * 329.99831 * 7 5 3 11 11 C 1.46502 * 120.00115 * 179.97438 * 2 1 3 12 12 C 1.50695 * 109.47333 * 270.00268 * 11 2 1 13 13 C 1.38259 * 119.92481 * 270.28044 * 12 11 2 14 14 C 1.38243 * 120.13716 * 180.31290 * 13 12 11 15 15 C 1.38542 * 120.02842 * 359.43906 * 14 13 12 16 16 C 1.39260 * 119.83229 * 0.25608 * 15 14 13 17 17 C 1.38233 * 119.93185 * 89.99778 * 12 11 2 18 18 O 1.36506 * 108.64102 * 180.02562 * 16 15 14 19 19 C 1.43982 * 105.48527 * 342.71461 * 18 16 15 20 20 F 1.39897 * 110.57280 * 268.55862 * 19 18 16 21 21 F 1.39897 * 110.69797 * 145.74097 * 19 18 16 22 22 O 1.36512 * 131.52745 * 180.29225 * 15 14 13 23 23 H 1.09007 * 109.47136 * 274.20836 * 1 2 3 24 24 H 1.08998 * 109.46694 * 34.20326 * 1 2 3 25 25 H 1.09000 * 109.47246 * 154.20678 * 1 2 3 26 26 H 0.96991 * 120.00253 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47146 * 149.99761 * 11 2 1 28 28 H 1.09007 * 109.46654 * 30.00165 * 11 2 1 29 29 H 1.07992 * 119.93315 * 0.02562 * 13 12 11 30 30 H 1.07994 * 119.98359 * 179.71331 * 14 13 12 31 31 H 1.08008 * 119.98410 * 359.97438 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2211 -0.3561 5 6 1.5341 2.3428 0.4577 6 7 0.3845 2.2689 1.0944 7 14 2.3371 4.0046 0.1699 8 1 1.8681 4.5637 -1.1236 9 1 1.9689 4.9298 1.2716 10 1 3.8126 3.8416 0.1327 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7032 1.4215 13 6 3.5985 -1.2981 2.0736 14 6 3.8365 -1.6994 3.3749 15 6 2.9166 -2.4996 4.0329 16 6 1.7553 -2.9024 3.3782 17 6 1.5261 -2.5010 2.0721 18 8 1.0197 -3.6747 4.2301 19 6 1.9319 -4.0773 5.2688 20 9 2.5367 -5.2970 4.9464 21 9 1.2719 -4.1674 6.4989 22 8 2.9086 -3.0195 5.2951 23 1 -0.3634 0.0754 1.0250 24 1 -0.3633 0.8499 -0.5777 25 1 -0.3634 -0.9253 -0.4472 26 1 -0.0458 3.0773 1.4138 27 1 3.1499 -1.1386 -0.5134 28 1 1.6084 -2.0286 -0.5130 29 1 4.3146 -0.6707 1.5638 30 1 4.7377 -1.3853 3.8804 31 1 0.6263 -2.8118 1.5619 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352002818.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:18 Heat of formation + Delta-G solvation = -112.747098 kcal Electronic energy + Delta-G solvation = -20760.232192 eV Core-core repulsion = 17065.429675 eV Total energy + Delta-G solvation = -3694.802517 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.43105 -47.89133 -41.96829 -38.03443 -36.77878 -35.35843 -31.86983 -30.33719 -29.65675 -26.26118 -25.77060 -24.90589 -22.96155 -22.50338 -20.93324 -19.13809 -18.66532 -18.43334 -17.13625 -16.84644 -15.74626 -15.29168 -14.89449 -14.71585 -14.61562 -14.19283 -14.12097 -13.85297 -13.71668 -13.69419 -13.50881 -13.14618 -13.04914 -12.44844 -11.60463 -11.45833 -11.14870 -10.95144 -10.93031 -10.70307 -10.37614 -10.10853 -10.01059 -8.70167 -8.60651 -8.08092 -6.94439 -5.87077 -3.31125 1.28865 1.46855 1.79597 2.41836 3.30883 3.37044 3.38995 3.82168 3.97768 4.11854 4.40168 4.53193 4.95076 5.18033 5.25119 5.45212 5.54147 5.56031 5.65165 5.99482 6.20352 6.27003 6.43839 6.44282 6.55368 6.65477 6.99132 7.16823 7.27443 7.61775 7.69286 8.23836 9.07381 9.69001 10.17196 11.16864 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.004896 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.887410 B = 5717.536517 C = 5835.489606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.586 5.586 3 C -0.258 4.258 4 H 0.073 0.927 5 C 0.005 3.995 6 N -0.900 5.900 7 Si 0.908 3.092 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.180 3.820 12 C -0.060 4.060 13 C -0.085 4.085 14 C -0.081 4.081 15 C -0.005 4.005 16 C 0.020 3.980 17 C -0.077 4.077 18 O -0.291 6.291 19 C 0.566 3.434 20 F -0.161 7.161 21 F -0.125 7.125 22 O -0.292 6.292 23 H 0.030 0.970 24 H 0.049 0.951 25 H 0.000 1.000 26 H 0.255 0.745 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 -10.896 3.417 12.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.387 4.387 4 H 0.091 0.909 5 C -0.194 4.194 6 N -0.543 5.543 7 Si 0.737 3.263 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.203 1.203 11 C 0.053 3.947 12 C -0.065 4.065 13 C -0.104 4.104 14 C -0.100 4.100 15 C -0.049 4.049 16 C -0.023 4.023 17 C -0.096 4.096 18 O -0.211 6.211 19 C 0.457 3.543 20 F -0.143 7.143 21 F -0.106 7.106 22 O -0.212 6.212 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.019 0.981 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.159 0.841 30 H 0.152 0.848 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.113 -10.757 3.657 12.084 hybrid contribution 0.119 0.736 0.728 1.042 sum 4.233 -10.021 4.385 11.729 Atomic orbital electron populations 1.20898 0.82001 0.96026 0.99609 1.44247 1.02171 1.00289 1.83889 1.19273 0.98547 0.84893 1.36020 0.90881 1.25126 0.97600 0.98869 0.97828 1.70065 1.17566 1.27515 1.39127 0.86207 0.78907 0.83699 0.77438 1.21294 1.21657 1.20286 1.20079 0.97315 0.88880 0.88474 1.21232 0.91800 0.91743 1.01686 1.20909 0.98100 0.98617 0.92806 1.20075 0.97670 0.98081 0.94130 1.19420 0.98162 1.04823 0.82464 1.19563 0.90786 0.98994 0.92972 1.19984 1.01112 0.99818 0.88725 1.87579 1.32351 1.65736 1.35393 1.21916 0.76978 0.77969 0.77405 1.93233 1.83069 1.45615 1.92433 1.93209 1.80082 1.96042 1.41246 1.87554 1.58626 1.46023 1.29014 0.95143 0.93191 0.98103 0.93434 0.91863 0.92750 0.84082 0.84793 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.69 9.01 59.85 0.54 4.23 16 2 N -0.59 -13.54 2.91 -182.50 -0.53 -14.07 16 3 C -0.26 -6.52 9.67 -15.06 -0.15 -6.67 16 4 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 5 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 6 N -0.90 -25.20 10.59 55.49 0.59 -24.61 16 7 Si 0.91 20.81 29.57 -169.99 -5.03 15.78 16 8 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 C 0.18 3.27 5.83 -5.19 -0.03 3.24 16 12 C -0.06 -1.06 5.46 -104.62 -0.57 -1.63 16 13 C -0.09 -1.41 9.69 -39.57 -0.38 -1.79 16 14 C -0.08 -1.28 10.06 -39.47 -0.40 -1.68 16 15 C -0.01 -0.09 7.15 -39.09 -0.28 -0.37 16 16 C 0.02 0.36 7.15 -39.09 -0.28 0.08 16 17 C -0.08 -1.34 9.71 -39.47 -0.38 -1.72 16 18 O -0.29 -5.06 11.35 -45.71 -0.52 -5.58 16 19 C 0.57 8.96 3.69 101.05 0.37 9.33 16 20 F -0.16 -2.38 17.57 2.25 0.04 -2.35 16 21 F -0.12 -1.83 17.57 2.25 0.04 -1.79 16 22 O -0.29 -4.94 11.35 -45.73 -0.52 -5.46 16 23 H 0.03 0.78 7.42 -51.93 -0.39 0.39 16 24 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 25 H 0.00 0.01 7.84 -51.93 -0.41 -0.40 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.06 1.07 7.98 -51.93 -0.41 0.65 16 28 H 0.05 0.88 7.81 -51.93 -0.41 0.47 16 29 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 30 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 283.33 15.07 4.27 4.27 Total: -1.00 -28.18 283.33 -6.11 -34.28 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: -2.80 Total: -3.56 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.65 Total: 3.08 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.06 Total: -38.68 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -1.04 Total: -11.04 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.08 Total: -4.14 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.18 -6.11 -34.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352002818.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.463 kcal (2) G-P(sol) polarization free energy of solvation -28.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds