Wall clock time and date at job start Mon Mar 30 2020 00:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 120.00111 * 2 1 4 4 H 1.08001 * 120.00123 * 202.37620 * 3 2 1 5 5 C 1.38818 * 120.00202 * 22.37636 * 3 2 1 6 6 N 1.31617 * 119.99920 * 11.32710 * 5 3 2 7 7 Si 1.86793 * 120.00183 * 191.32696 * 5 3 2 8 8 H 1.48503 * 109.47276 * 89.99724 * 7 5 3 9 9 H 1.48501 * 109.47362 * 209.99981 * 7 5 3 10 10 H 1.48503 * 109.47330 * 329.99831 * 7 5 3 11 11 C 1.46502 * 120.00115 * 179.97438 * 2 1 3 12 12 C 1.50695 * 109.47333 * 270.00268 * 11 2 1 13 13 C 1.38259 * 119.92481 * 270.28044 * 12 11 2 14 14 C 1.38243 * 120.13716 * 180.31290 * 13 12 11 15 15 C 1.38542 * 120.02842 * 359.43906 * 14 13 12 16 16 C 1.39260 * 119.83229 * 0.25608 * 15 14 13 17 17 C 1.38233 * 119.93185 * 89.99778 * 12 11 2 18 18 O 1.36506 * 108.64102 * 180.02562 * 16 15 14 19 19 C 1.43982 * 105.48527 * 342.71461 * 18 16 15 20 20 F 1.39897 * 110.57280 * 268.55862 * 19 18 16 21 21 F 1.39897 * 110.69797 * 145.74097 * 19 18 16 22 22 O 1.36512 * 131.52745 * 180.29225 * 15 14 13 23 23 H 1.09007 * 109.47136 * 274.20836 * 1 2 3 24 24 H 1.08998 * 109.46694 * 34.20326 * 1 2 3 25 25 H 1.09000 * 109.47246 * 154.20678 * 1 2 3 26 26 H 0.96991 * 120.00253 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47146 * 149.99761 * 11 2 1 28 28 H 1.09007 * 109.46654 * 30.00165 * 11 2 1 29 29 H 1.07992 * 119.93315 * 0.02562 * 13 12 11 30 30 H 1.07994 * 119.98359 * 179.71331 * 14 13 12 31 31 H 1.08008 * 119.98410 * 359.97438 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2211 -0.3561 5 6 1.5341 2.3428 0.4577 6 7 0.3845 2.2689 1.0944 7 14 2.3371 4.0046 0.1699 8 1 1.8681 4.5637 -1.1236 9 1 1.9689 4.9298 1.2716 10 1 3.8126 3.8416 0.1327 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7032 1.4215 13 6 3.5985 -1.2981 2.0736 14 6 3.8365 -1.6994 3.3749 15 6 2.9166 -2.4996 4.0329 16 6 1.7553 -2.9024 3.3782 17 6 1.5261 -2.5010 2.0721 18 8 1.0197 -3.6747 4.2301 19 6 1.9319 -4.0773 5.2688 20 9 2.5367 -5.2970 4.9464 21 9 1.2719 -4.1674 6.4989 22 8 2.9086 -3.0195 5.2951 23 1 -0.3634 0.0754 1.0250 24 1 -0.3633 0.8499 -0.5777 25 1 -0.3634 -0.9253 -0.4472 26 1 -0.0458 3.0773 1.4138 27 1 3.1499 -1.1386 -0.5134 28 1 1.6084 -2.0286 -0.5130 29 1 4.3146 -0.6707 1.5638 30 1 4.7377 -1.3853 3.8804 31 1 0.6263 -2.8118 1.5619 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352002818.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:18 Heat of formation + Delta-G solvation = -128.455986 kcal Electronic energy + Delta-G solvation = -20760.913381 eV Core-core repulsion = 17065.429675 eV Total energy + Delta-G solvation = -3695.483705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.65986 -49.11269 -43.29210 -39.42064 -38.11261 -37.04998 -33.58491 -31.75580 -31.14502 -27.98277 -27.41835 -26.23386 -24.34006 -23.98587 -22.53661 -20.41022 -19.93116 -19.75709 -18.69501 -18.46918 -17.07494 -16.81805 -16.47793 -16.05470 -15.83430 -15.53127 -15.42340 -15.36006 -15.12425 -15.04834 -14.98118 -14.76771 -14.36932 -14.03251 -13.21139 -13.01483 -12.74896 -12.65909 -12.48233 -12.27639 -12.00784 -11.91209 -11.77659 -10.61625 -9.93930 -9.45855 -8.79919 -7.79930 -5.26963 -0.06153 0.15723 0.51374 1.11052 1.51306 1.52773 1.60320 2.43903 2.59216 2.70776 2.84924 3.21573 3.37572 3.64715 3.87702 3.90164 4.03875 4.26349 4.33089 4.67384 4.88176 4.88633 4.94399 5.08036 5.10513 5.21302 5.38671 5.62856 5.69123 5.77611 5.84744 6.35126 7.17117 7.87875 8.31360 9.23349 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.004896 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.887410 B = 5717.536517 C = 5835.489606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.604 5.604 3 C -0.252 4.252 4 H 0.085 0.915 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.964 3.036 8 H -0.289 1.289 9 H -0.304 1.304 10 H -0.261 1.261 11 C 0.179 3.821 12 C -0.070 4.070 13 C -0.085 4.085 14 C -0.077 4.077 15 C -0.011 4.011 16 C 0.003 3.997 17 C -0.082 4.082 18 O -0.300 6.300 19 C 0.570 3.430 20 F -0.154 7.154 21 F -0.118 7.118 22 O -0.296 6.296 23 H -0.002 1.002 24 H 0.020 0.980 25 H 0.035 0.965 26 H 0.245 0.755 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.158 0.842 30 H 0.165 0.835 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.062 -11.777 3.222 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.325 5.325 3 C -0.383 4.383 4 H 0.103 0.897 5 C -0.248 4.248 6 N -0.586 5.586 7 Si 0.793 3.207 8 H -0.216 1.216 9 H -0.231 1.231 10 H -0.185 1.185 11 C 0.054 3.946 12 C -0.074 4.074 13 C -0.103 4.103 14 C -0.096 4.096 15 C -0.055 4.055 16 C -0.040 4.040 17 C -0.101 4.101 18 O -0.221 6.221 19 C 0.461 3.539 20 F -0.136 7.136 21 F -0.099 7.099 22 O -0.217 6.217 23 H 0.017 0.983 24 H 0.038 0.962 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.175 0.825 30 H 0.182 0.818 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.838 -11.692 3.462 13.520 hybrid contribution -0.338 0.803 0.816 1.194 sum 5.501 -10.889 4.279 12.928 Atomic orbital electron populations 1.20605 0.82752 0.96369 0.97428 1.44343 1.02089 1.01458 1.84620 1.19637 0.98651 0.85826 1.34150 0.89742 1.25798 0.98355 1.01880 0.98764 1.70244 1.19361 1.27304 1.41669 0.85304 0.78907 0.80098 0.76382 1.21598 1.23142 1.18542 1.20220 0.98010 0.87343 0.89063 1.21176 0.92600 0.92503 1.01081 1.21193 0.98005 0.98022 0.93120 1.20410 0.98309 0.96940 0.93892 1.19738 0.98341 1.04843 0.82554 1.19733 0.91256 0.99623 0.93395 1.20142 1.01379 0.99703 0.88862 1.87554 1.32944 1.65832 1.35725 1.21841 0.76685 0.77997 0.77358 1.93246 1.82893 1.45040 1.92398 1.93227 1.79929 1.95999 1.40735 1.87541 1.58805 1.46376 1.28930 0.98329 0.96155 0.94675 0.94573 0.90095 0.90483 0.82481 0.81774 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.04 9.01 127.77 1.15 9.19 16 2 N -0.60 -27.11 2.91 -731.29 -2.13 -29.24 16 3 C -0.25 -12.47 9.67 84.04 0.81 -11.65 16 4 H 0.08 3.89 7.84 -2.91 -0.02 3.87 16 5 C -0.05 -2.80 5.13 84.86 0.44 -2.36 16 6 N -0.94 -53.91 10.59 21.65 0.23 -53.68 16 7 Si 0.96 42.82 29.57 68.60 2.03 44.85 16 8 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 9 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 11 C 0.18 6.06 5.83 85.63 0.50 6.56 16 12 C -0.07 -2.31 5.46 -19.86 -0.11 -2.42 16 13 C -0.08 -2.56 9.69 22.28 0.22 -2.35 16 14 C -0.08 -2.23 10.06 22.34 0.22 -2.00 16 15 C -0.01 -0.37 7.15 22.59 0.16 -0.21 16 16 C 0.00 0.10 7.15 22.59 0.16 0.26 16 17 C -0.08 -2.72 9.71 22.34 0.22 -2.50 16 18 O -0.30 -10.12 11.35 -76.12 -0.86 -10.98 16 19 C 0.57 17.18 3.69 113.37 0.42 17.60 16 20 F -0.15 -4.28 17.57 44.97 0.79 -3.49 16 21 F -0.12 -3.29 17.57 44.97 0.79 -2.50 16 22 O -0.30 -9.49 11.35 -76.19 -0.86 -10.36 16 23 H 0.00 -0.09 7.42 -2.38 -0.02 -0.10 16 24 H 0.02 1.02 7.19 -2.39 -0.02 1.00 16 25 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 26 H 0.24 13.91 8.31 -92.72 -0.77 13.14 16 27 H 0.08 2.45 7.98 -2.39 -0.02 2.43 16 28 H 0.08 2.24 7.81 -2.38 -0.02 2.22 16 29 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 31 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -59.97 283.33 5.34 -54.63 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: 1.17 Total: 0.65 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 4.19 Total: 10.12 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -1.90 Total: -82.92 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -1.73 Total: -21.34 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 1.58 Total: -5.99 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -59.97 5.34 -54.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352002818.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.821 kcal (2) G-P(sol) polarization free energy of solvation -59.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds