Wall clock time and date at job start Mon Mar 30 2020 00:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46931 * 157.80238 * 3 2 1 5 5 C 1.36868 * 119.99768 * 280.19804 * 4 3 2 6 6 H 1.07994 * 120.00049 * 290.62156 * 5 4 3 7 7 C 1.39050 * 119.99731 * 110.62926 * 5 4 3 8 8 N 1.31355 * 120.00332 * 62.58772 * 7 5 4 9 9 Si 1.86798 * 119.99655 * 242.58311 * 7 5 4 10 10 H 1.48506 * 109.46965 * 90.00377 * 9 7 5 11 11 H 1.48498 * 109.47201 * 210.00203 * 9 7 5 12 12 H 1.48503 * 109.47449 * 330.00569 * 9 7 5 13 13 C 1.34775 * 120.00316 * 100.19388 * 4 3 2 14 14 O 1.21609 * 120.00331 * 191.79692 * 13 4 3 15 15 C 1.47598 * 119.99833 * 11.80751 * 13 4 3 16 16 C 1.40320 * 119.88631 * 320.71215 * 15 13 4 17 17 C 1.36136 * 120.55311 * 179.97438 * 16 15 13 18 18 C 1.39935 * 119.98359 * 0.02562 * 17 16 15 19 19 N 1.34742 * 134.58061 * 179.97438 * 18 17 16 20 20 N 1.28640 * 109.29722 * 180.02562 * 19 18 17 21 21 N 1.28821 * 111.79360 * 359.97438 * 20 19 18 22 22 H 0.97000 * 125.94221 * 179.97438 * 21 20 19 23 23 C 1.37368 * 108.11094 * 359.76606 * 21 20 19 24 24 C 1.38602 * 134.88340 * 179.52431 * 23 21 20 25 25 H 1.08994 * 109.47339 * 37.80123 * 3 2 1 26 26 H 1.09002 * 109.47094 * 277.79466 * 3 2 1 27 27 H 0.97001 * 120.00028 * 179.97438 * 8 7 5 28 28 H 1.08007 * 119.72582 * 359.97438 * 16 15 13 29 29 H 1.07997 * 120.00620 * 180.02562 * 17 16 15 30 30 H 1.08002 * 120.24431 * 0.72939 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0958 1.2797 -0.5218 5 6 3.1259 1.5011 -1.8722 6 1 3.8277 0.9631 -2.4920 7 6 2.2529 2.4189 -2.4458 8 7 2.3189 3.6870 -2.1096 9 14 0.9864 1.8485 -3.6947 10 1 -0.2664 1.4710 -2.9922 11 1 0.7049 2.9483 -4.6520 12 1 1.5135 0.6726 -4.4328 13 6 3.5147 2.2385 0.3277 14 8 3.7152 3.3667 -0.0796 15 6 3.7305 1.9191 1.7525 16 6 2.8420 1.0617 2.4191 17 6 3.0283 0.7575 3.7329 18 6 4.1129 1.3019 4.4298 19 7 4.5682 1.2072 5.6944 20 7 5.6284 1.9249 5.8194 21 7 5.9398 2.5141 4.7170 22 1 6.6984 3.1031 4.5807 23 6 5.0134 2.1595 3.7667 24 6 4.8155 2.4688 2.4302 25 1 2.9718 -0.8111 -0.6298 26 1 2.9715 -0.1386 1.0182 27 1 1.7101 4.3272 -2.5101 28 1 2.0032 0.6395 1.8855 29 1 2.3393 0.0963 4.2372 30 1 5.5000 3.1283 1.9174 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355708877.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:40 Heat of formation + Delta-G solvation = 133.935255 kcal Electronic energy + Delta-G solvation = -19890.021037 eV Core-core repulsion = 16688.897407 eV Total energy + Delta-G solvation = -3201.123630 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.22805 -40.94187 -38.27817 -37.70432 -36.00170 -34.87035 -34.38203 -31.81644 -31.44183 -29.02604 -27.18217 -25.20974 -24.29096 -23.49139 -21.62217 -19.75114 -19.40745 -19.23489 -18.20159 -17.29931 -17.12251 -16.63370 -16.43574 -16.00484 -15.37843 -15.24981 -15.03945 -14.64123 -14.07047 -13.95522 -13.74267 -13.49471 -13.24532 -13.14496 -12.95473 -12.86425 -12.55234 -12.25943 -12.20505 -11.98072 -11.80651 -10.65190 -10.09331 -9.90473 -9.45955 -9.28056 -8.59976 -5.99114 -0.61098 0.11323 1.13748 1.27390 1.46286 1.48530 1.53162 1.69593 1.85289 2.16725 2.29385 2.56769 2.69321 2.93373 3.16884 3.38701 3.57124 3.85971 3.89249 4.04727 4.13535 4.34490 4.48991 4.80887 4.85531 4.93741 5.10377 5.27223 5.42974 5.51436 5.91143 6.37989 6.65638 7.01784 7.09021 7.17616 7.46548 8.21568 8.36254 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031514 B = 0.005695 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.282436 B = 4915.057808 C = 5557.446661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.221 3.779 3 C 0.170 3.830 4 N -0.455 5.455 5 C -0.464 4.464 6 H 0.089 0.911 7 C 0.106 3.894 8 N -0.739 5.739 9 Si 0.862 3.138 10 H -0.290 1.290 11 H -0.287 1.287 12 H -0.247 1.247 13 C 0.503 3.497 14 O -0.533 6.533 15 C -0.088 4.088 16 C -0.110 4.110 17 C -0.040 4.040 18 C 0.004 3.996 19 N -0.274 5.274 20 N -0.021 5.021 21 N -0.393 5.393 22 H 0.470 0.530 23 C 0.027 3.973 24 C -0.051 4.051 25 H 0.142 0.858 26 H 0.156 0.844 27 H 0.266 0.734 28 H 0.149 0.851 29 H 0.170 0.830 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.756 -5.645 10.418 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.097 4.097 3 C 0.044 3.956 4 N -0.180 5.180 5 C -0.585 4.585 6 H 0.106 0.894 7 C -0.117 4.117 8 N -0.361 5.361 9 Si 0.684 3.316 10 H -0.216 1.216 11 H -0.213 1.213 12 H -0.170 1.170 13 C 0.291 3.709 14 O -0.409 6.409 15 C -0.095 4.095 16 C -0.131 4.131 17 C -0.062 4.062 18 C -0.122 4.122 19 N -0.150 5.150 20 N -0.003 5.003 21 N -0.125 5.125 22 H 0.321 0.679 23 C -0.094 4.094 24 C -0.073 4.073 25 H 0.160 0.840 26 H 0.173 0.827 27 H 0.077 0.923 28 H 0.166 0.834 29 H 0.188 0.812 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.523 -5.044 11.709 13.894 hybrid contribution -0.282 0.840 -2.181 2.354 sum 5.241 -4.204 9.528 11.659 Atomic orbital electron populations 1.81088 1.14877 1.09902 1.10898 1.30659 0.96491 0.91461 0.91107 1.20411 0.78689 0.91125 1.05346 1.43012 1.57370 1.12648 1.04920 1.18327 1.26448 1.32153 0.81584 0.89397 1.26169 0.96687 0.92665 0.96228 1.71124 1.26622 1.02726 1.35614 0.87060 0.82262 0.80974 0.81314 1.21645 1.21319 1.16975 1.19364 0.79289 0.86754 0.85450 1.90817 1.51204 1.20955 1.77963 1.20253 0.96438 0.98358 0.94462 1.21297 0.99707 0.97569 0.94567 1.20142 0.94838 0.98990 0.92216 1.20295 0.99199 1.01481 0.91201 1.75303 1.05381 1.17738 1.16594 1.77866 1.09931 1.04584 1.07891 1.44839 1.24307 1.37646 1.05706 0.67903 1.19579 0.94019 1.02344 0.93427 1.19946 0.98334 0.99515 0.89554 0.84014 0.82750 0.92337 0.83392 0.81217 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -19.65 18.54 20.01 0.37 -19.28 16 2 C 0.22 7.81 13.94 89.44 1.25 9.06 16 3 C 0.17 5.09 5.41 84.57 0.46 5.55 16 4 N -0.46 -19.17 2.52 -648.97 -1.64 -20.81 16 5 C -0.46 -22.80 8.49 84.10 0.71 -22.08 16 6 H 0.09 4.31 8.06 -2.91 -0.02 4.28 16 7 C 0.11 5.51 5.32 84.96 0.45 5.96 16 8 N -0.74 -41.04 11.53 21.68 0.25 -40.79 16 9 Si 0.86 39.33 29.69 68.60 2.04 41.37 16 10 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 13 C 0.50 21.85 7.19 86.71 0.62 22.47 16 14 O -0.53 -28.53 14.56 -4.06 -0.06 -28.59 16 15 C -0.09 -2.83 5.46 -20.06 -0.11 -2.94 16 16 C -0.11 -2.91 7.30 22.29 0.16 -2.75 16 17 C -0.04 -0.92 10.03 22.19 0.22 -0.70 16 18 C 0.00 0.10 7.36 39.77 0.29 0.39 16 19 N -0.27 -7.51 12.42 -52.36 -0.65 -8.16 16 20 N -0.02 -0.50 13.28 37.02 0.49 -0.01 16 21 N -0.39 -7.73 7.08 -51.70 -0.37 -8.10 16 22 H 0.47 5.21 8.96 -219.81 -1.97 3.24 16 23 C 0.03 0.67 7.40 39.02 0.29 0.96 16 24 C -0.05 -1.42 9.64 22.60 0.22 -1.21 16 25 H 0.14 3.40 8.12 -2.39 -0.02 3.38 16 26 H 0.16 3.54 3.99 -2.39 -0.01 3.53 16 27 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 28 H 0.15 3.85 4.11 -2.91 -0.01 3.84 16 29 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 30 H 0.14 3.92 8.05 -2.91 -0.02 3.90 16 Total: -1.00 -71.29 276.14 4.28 -67.02 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -0.73 Total: 2.64 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 4.57 Total: 14.71 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -1.54 Total: -97.14 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.06 Total: -28.59 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.04 Total: 41.37 kcal Total: -71.29 4.28 -67.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355708877.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.953 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds