Wall clock time and date at job start Mon Mar 30 2020 01:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 N 1.46503 * 109.46757 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00075 * 275.82505 * 4 3 2 6 6 H 1.07998 * 119.99792 * 35.79521 * 5 4 3 7 7 C 1.38812 * 120.00112 * 215.79493 * 5 4 3 8 8 N 1.31622 * 120.00067 * 22.96671 * 7 5 4 9 9 Si 1.86798 * 119.99686 * 202.97662 * 7 5 4 10 10 H 1.48505 * 109.47338 * 89.99773 * 9 7 5 11 11 H 1.48500 * 109.46760 * 209.99731 * 9 7 5 12 12 H 1.48498 * 109.47247 * 329.99304 * 9 7 5 13 13 C 1.46504 * 119.99747 * 95.83157 * 4 3 2 14 14 C 1.50696 * 109.47071 * 269.99186 * 13 4 3 15 15 C 1.33245 * 125.11911 * 90.00327 * 14 13 4 16 16 C 1.38549 * 114.99106 * 179.97438 * 15 14 13 17 17 C 1.34170 * 114.71270 * 359.97438 * 16 15 14 18 18 S 1.76203 * 125.24417 * 179.97438 * 17 16 15 19 19 C 1.81401 * 102.99764 * 180.02562 * 18 17 16 20 20 S 1.75856 * 125.12855 * 270.26315 * 14 13 4 21 21 H 1.08997 * 109.47130 * 299.99878 * 1 2 3 22 22 H 1.09001 * 109.47038 * 60.00532 * 1 2 3 23 23 H 1.09000 * 109.46814 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47059 * 239.99412 * 2 1 3 25 25 H 1.09008 * 109.46934 * 120.00118 * 2 1 3 26 26 H 1.08997 * 109.47026 * 60.00058 * 3 2 1 27 27 H 1.09001 * 109.46737 * 299.99652 * 3 2 1 28 28 H 0.96997 * 119.99792 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46838 * 149.99868 * 13 4 3 30 30 H 1.08996 * 109.46942 * 29.99706 * 13 4 3 31 31 H 1.08007 * 122.50379 * 359.97438 * 15 14 13 32 32 H 1.08004 * 122.64245 * 180.02562 * 16 15 14 33 33 H 1.08996 * 109.47413 * 60.00439 * 19 18 17 34 34 H 1.08997 * 109.47091 * 299.99554 * 19 18 17 35 35 H 1.09000 * 109.46868 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.3222 1.1807 6 1 3.8019 0.6921 1.9677 7 6 5.3807 2.0101 1.3654 8 7 5.6348 3.0887 0.6551 9 14 6.6234 1.4048 2.6219 10 1 7.5613 0.4542 1.9723 11 1 7.3844 2.5602 3.1615 12 1 5.9125 0.7191 3.7307 13 6 4.2381 1.5711 -1.2613 14 6 4.4895 0.2017 -1.8380 15 6 3.6738 -0.4396 -2.6739 16 6 4.1126 -1.6910 -3.0751 17 6 5.2937 -2.0634 -2.5588 18 16 6.1072 -3.5929 -2.8805 19 6 7.6237 -3.4639 -1.8935 20 16 5.9006 -0.7933 -1.5042 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9562 -0.8900 28 1 6.4675 3.5691 0.7840 29 1 5.1904 2.0690 -1.0791 30 1 3.6493 2.1593 -1.9651 31 1 2.7403 -0.0155 -3.0134 32 1 3.5488 -2.3171 -3.7508 33 1 7.3637 -3.3408 -0.8422 34 1 8.2027 -2.6031 -2.2279 35 1 8.2163 -4.3703 -2.0178 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356054911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:55 Heat of formation + Delta-G solvation = 39.677329 kcal Electronic energy + Delta-G solvation = -16810.035736 eV Core-core repulsion = 14254.269190 eV Total energy + Delta-G solvation = -2555.766546 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.47674 -35.83497 -33.02988 -31.16930 -29.51932 -28.90825 -25.84802 -25.52641 -23.02640 -21.56571 -20.19918 -19.14377 -17.30777 -16.38234 -15.61622 -14.91173 -14.59270 -14.38850 -13.92272 -13.73750 -13.36479 -13.29044 -12.93099 -12.50588 -12.35591 -12.11489 -11.71349 -11.57964 -11.27703 -11.04453 -10.89896 -10.80075 -10.51778 -10.34411 -10.14232 -9.92839 -9.86844 -9.81907 -8.91800 -8.58309 -7.85498 -6.95970 -6.73937 -5.93739 -3.46055 1.54701 1.66368 1.94554 2.71325 2.85541 3.27796 3.33254 3.37381 3.39246 4.39236 5.09948 5.13587 5.17356 5.44445 5.67393 5.68783 5.71247 5.79518 5.97285 6.04958 6.14961 6.24682 6.43564 6.46152 6.58239 6.61260 6.69398 6.91672 6.95629 7.02564 7.18556 7.47045 7.72494 8.37218 9.03927 9.66792 10.24080 11.06673 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.008363 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.091479 B = 3347.320038 C = 4645.522083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.149 3.851 4 N -0.571 5.571 5 C -0.254 4.254 6 H 0.063 0.937 7 C 0.014 3.986 8 N -0.881 5.881 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 C 0.195 3.805 14 C -0.122 4.122 15 C -0.168 4.168 16 C -0.097 4.097 17 C -0.241 4.241 18 S -0.085 6.085 19 C -0.148 4.148 20 S 0.117 5.883 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.257 0.743 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 -8.421 -6.072 10.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.023 3.977 4 N -0.289 5.289 5 C -0.384 4.384 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 C 0.067 3.933 14 C -0.246 4.246 15 C -0.199 4.199 16 C -0.135 4.135 17 C -0.469 4.469 18 S 0.151 5.849 19 C -0.318 4.318 20 S 0.378 5.622 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.124 0.876 30 H 0.068 0.932 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.298 -9.022 -5.798 10.729 hybrid contribution -0.239 0.409 0.620 0.781 sum 0.059 -8.613 -5.178 10.050 Atomic orbital electron populations 1.21717 0.97399 1.00349 1.00925 1.22161 0.93697 1.00879 1.01961 1.20940 0.84591 0.93180 0.98985 1.43782 0.99611 1.83667 1.01797 1.19052 1.04477 1.21502 0.93374 0.91969 1.25107 1.00670 0.94609 0.98290 1.69995 1.24722 1.14817 1.42748 0.86502 0.81910 0.78378 0.81538 1.20853 1.21514 1.19982 1.19757 1.00818 0.86638 0.86122 1.26253 0.95404 1.04113 0.98863 1.19840 1.01751 0.95060 1.03255 1.19745 0.94752 0.96952 1.02066 1.25847 1.05645 1.03969 1.11467 1.84757 1.20902 1.17731 1.61539 1.23652 0.98211 1.06572 1.03356 1.84457 1.24479 1.08336 1.44907 0.93325 0.93457 0.93865 0.92239 0.92654 0.93523 0.94566 0.93268 0.87593 0.93182 0.85051 0.85431 0.89669 0.89773 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.79 16 2 C -0.15 -2.69 6.22 -26.73 -0.17 -2.85 16 3 C 0.15 3.05 5.72 -4.04 -0.02 3.02 16 4 N -0.57 -13.53 2.43 -174.61 -0.42 -13.96 16 5 C -0.25 -6.65 9.46 -15.06 -0.14 -6.80 16 6 H 0.06 1.67 7.93 -52.49 -0.42 1.25 16 7 C 0.01 0.38 4.93 -17.43 -0.09 0.29 16 8 N -0.88 -24.19 11.44 55.49 0.64 -23.56 16 9 Si 0.89 21.00 29.61 -169.99 -5.03 15.97 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.20 4.41 5.82 -5.19 -0.03 4.38 16 14 C -0.12 -2.50 6.05 -36.05 -0.22 -2.72 16 15 C -0.17 -3.05 8.44 -41.21 -0.35 -3.40 16 16 C -0.10 -1.68 10.13 -40.90 -0.41 -2.09 16 17 C -0.24 -4.25 6.69 29.30 0.20 -4.06 16 18 S -0.08 -1.25 22.72 -107.50 -2.44 -3.69 16 19 C -0.15 -1.82 9.84 101.05 0.99 -0.83 16 20 S 0.12 2.31 22.30 -107.50 -2.40 -0.08 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.11 6.39 -51.93 -0.33 0.78 16 25 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 26 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 27 H 0.04 0.69 7.83 -51.93 -0.41 0.28 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.11 2.70 5.45 -51.93 -0.28 2.42 16 30 H 0.05 1.06 7.86 -51.93 -0.41 0.66 16 31 H 0.13 2.18 8.04 -52.48 -0.42 1.76 16 32 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 1.00 8.14 -51.92 -0.42 0.58 16 LS Contribution 317.99 15.07 4.79 4.79 Total: -1.00 -27.23 317.99 -9.95 -37.18 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.20 Total: 0.19 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 0.13 Total: -16.83 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.21 Total: -37.52 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -4.84 Total: -3.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.23 -9.95 -37.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356054911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.853 kcal (2) G-P(sol) polarization free energy of solvation -27.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds