Wall clock time and date at job start Mon Mar 30 2020 01:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 N 1.46503 * 109.46757 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00075 * 275.82505 * 4 3 2 6 6 H 1.07998 * 119.99792 * 35.79521 * 5 4 3 7 7 C 1.38812 * 120.00112 * 215.79493 * 5 4 3 8 8 N 1.31622 * 120.00067 * 22.96671 * 7 5 4 9 9 Si 1.86798 * 119.99686 * 202.97662 * 7 5 4 10 10 H 1.48505 * 109.47338 * 89.99773 * 9 7 5 11 11 H 1.48500 * 109.46760 * 209.99731 * 9 7 5 12 12 H 1.48498 * 109.47247 * 329.99304 * 9 7 5 13 13 C 1.46504 * 119.99747 * 95.83157 * 4 3 2 14 14 C 1.50696 * 109.47071 * 269.99186 * 13 4 3 15 15 C 1.33245 * 125.11911 * 90.00327 * 14 13 4 16 16 C 1.38549 * 114.99106 * 179.97438 * 15 14 13 17 17 C 1.34170 * 114.71270 * 359.97438 * 16 15 14 18 18 S 1.76203 * 125.24417 * 179.97438 * 17 16 15 19 19 C 1.81401 * 102.99764 * 180.02562 * 18 17 16 20 20 S 1.75856 * 125.12855 * 270.26315 * 14 13 4 21 21 H 1.08997 * 109.47130 * 299.99878 * 1 2 3 22 22 H 1.09001 * 109.47038 * 60.00532 * 1 2 3 23 23 H 1.09000 * 109.46814 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47059 * 239.99412 * 2 1 3 25 25 H 1.09008 * 109.46934 * 120.00118 * 2 1 3 26 26 H 1.08997 * 109.47026 * 60.00058 * 3 2 1 27 27 H 1.09001 * 109.46737 * 299.99652 * 3 2 1 28 28 H 0.96997 * 119.99792 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46838 * 149.99868 * 13 4 3 30 30 H 1.08996 * 109.46942 * 29.99706 * 13 4 3 31 31 H 1.08007 * 122.50379 * 359.97438 * 15 14 13 32 32 H 1.08004 * 122.64245 * 180.02562 * 16 15 14 33 33 H 1.08996 * 109.47413 * 60.00439 * 19 18 17 34 34 H 1.08997 * 109.47091 * 299.99554 * 19 18 17 35 35 H 1.09000 * 109.46868 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.3222 1.1807 6 1 3.8019 0.6921 1.9677 7 6 5.3807 2.0101 1.3654 8 7 5.6348 3.0887 0.6551 9 14 6.6234 1.4048 2.6219 10 1 7.5613 0.4542 1.9723 11 1 7.3844 2.5602 3.1615 12 1 5.9125 0.7191 3.7307 13 6 4.2381 1.5711 -1.2613 14 6 4.4895 0.2017 -1.8380 15 6 3.6738 -0.4396 -2.6739 16 6 4.1126 -1.6910 -3.0751 17 6 5.2937 -2.0634 -2.5588 18 16 6.1072 -3.5929 -2.8805 19 6 7.6237 -3.4639 -1.8935 20 16 5.9006 -0.7933 -1.5042 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9562 -0.8900 28 1 6.4675 3.5691 0.7840 29 1 5.1904 2.0690 -1.0791 30 1 3.6493 2.1593 -1.9651 31 1 2.7403 -0.0155 -3.0134 32 1 3.5488 -2.3171 -3.7508 33 1 7.3637 -3.3408 -0.8422 34 1 8.2027 -2.6031 -2.2279 35 1 8.2163 -4.3703 -2.0178 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356054911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:55 Heat of formation + Delta-G solvation = 27.477976 kcal Electronic energy + Delta-G solvation = -16810.564740 eV Core-core repulsion = 14254.269190 eV Total energy + Delta-G solvation = -2556.295549 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.02281 -37.46692 -34.67366 -32.93124 -31.05524 -29.95514 -27.35865 -27.33449 -24.56698 -23.15292 -21.82275 -20.55548 -19.00022 -18.06555 -17.06380 -16.69979 -15.99884 -15.92418 -15.64108 -14.98771 -14.76455 -14.57193 -14.34015 -13.88247 -13.80197 -13.53861 -13.28433 -12.99363 -12.97511 -12.69758 -12.54091 -12.37695 -12.11953 -12.06771 -11.87863 -11.55083 -11.36424 -11.20375 -10.56369 -10.31531 -9.36565 -8.65086 -8.23008 -7.90284 -5.47167 0.08893 0.47411 0.52508 1.24807 1.38996 1.43127 1.49153 1.60332 1.88677 2.46082 3.17878 3.75725 4.14081 4.21073 4.24036 4.28331 4.45882 4.57809 4.59898 4.70947 4.76292 4.80838 4.84873 4.99054 5.15099 5.22929 5.27115 5.37128 5.45471 5.50796 5.65438 5.67102 5.77338 6.40628 7.10079 7.78994 8.31452 9.06256 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.008363 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.091479 B = 3347.320038 C = 4645.522083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.147 3.853 4 N -0.586 5.586 5 C -0.257 4.257 6 H 0.049 0.951 7 C -0.024 4.024 8 N -0.909 5.909 9 Si 0.933 3.067 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.271 1.271 13 C 0.203 3.797 14 C -0.151 4.151 15 C -0.146 4.146 16 C -0.106 4.106 17 C -0.232 4.232 18 S -0.068 6.068 19 C -0.148 4.148 20 S 0.078 5.922 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.254 0.746 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.150 0.850 32 H 0.156 0.844 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 -10.403 -7.166 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 C 0.022 3.978 4 N -0.305 5.305 5 C -0.388 4.388 6 H 0.067 0.933 7 C -0.222 4.222 8 N -0.552 5.552 9 Si 0.761 3.239 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.196 1.196 13 C 0.075 3.925 14 C -0.274 4.274 15 C -0.177 4.177 16 C -0.144 4.144 17 C -0.461 4.461 18 S 0.168 5.832 19 C -0.318 4.318 20 S 0.338 5.662 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.174 0.826 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.367 -11.026 -6.898 13.011 hybrid contribution -0.029 0.911 0.856 1.251 sum -0.396 -10.115 -6.042 11.788 Atomic orbital electron populations 1.21650 0.94370 1.01690 1.01899 1.21975 0.96207 0.98654 1.00545 1.21046 0.83060 0.94741 0.98996 1.43936 1.00832 1.84198 1.01528 1.19079 1.04860 1.20710 0.94138 0.93316 1.25583 1.01891 0.94805 0.99900 1.70088 1.24881 1.15886 1.44361 0.85792 0.80270 0.77800 0.80062 1.20764 1.21625 1.19570 1.19456 0.99243 0.87888 0.85922 1.25843 0.96743 1.03605 1.01254 1.20085 1.01482 0.94983 1.01179 1.20034 0.94908 0.96907 1.02530 1.26211 1.05669 1.04346 1.09838 1.84706 1.21719 1.15199 1.61609 1.23788 0.97294 1.08315 1.02368 1.84502 1.25277 1.09975 1.46445 0.92986 0.91891 0.92328 0.92559 0.95074 0.94880 0.93071 0.93692 0.90747 0.92543 0.83206 0.82623 0.90382 0.89809 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.03 16 2 C -0.13 -4.75 6.22 30.60 0.19 -4.56 16 3 C 0.15 5.97 5.72 86.38 0.49 6.46 16 4 N -0.59 -28.19 2.43 -706.34 -1.72 -29.91 16 5 C -0.26 -13.80 9.46 84.03 0.79 -13.00 16 6 H 0.05 2.69 7.93 -2.91 -0.02 2.67 16 7 C -0.02 -1.28 4.93 84.86 0.42 -0.86 16 8 N -0.91 -51.37 11.44 21.65 0.25 -51.12 16 9 Si 0.93 43.89 29.61 68.60 2.03 45.92 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.20 9.32 5.82 85.63 0.50 9.81 16 14 C -0.15 -6.13 6.05 24.56 0.15 -5.98 16 15 C -0.15 -5.02 8.44 21.22 0.18 -4.85 16 16 C -0.11 -3.38 10.13 21.42 0.22 -3.17 16 17 C -0.23 -7.75 6.69 66.89 0.45 -7.30 16 18 S -0.07 -1.82 22.72 -56.49 -1.28 -3.11 16 19 C -0.15 -3.28 9.84 113.37 1.12 -2.16 16 20 S 0.08 3.05 22.30 -56.49 -1.26 1.79 16 21 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 2.01 6.39 -2.39 -0.02 2.00 16 25 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 27 H 0.05 1.90 7.83 -2.39 -0.02 1.88 16 28 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.07 3.94 5.45 -2.39 -0.01 3.92 16 30 H 0.06 2.42 7.86 -2.39 -0.02 2.40 16 31 H 0.15 4.55 8.04 -2.91 -0.02 4.53 16 32 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -58.98 317.99 4.29 -54.68 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.06 Total: 10.38 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 5.22 Total: -28.63 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -1.47 Total: -81.03 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.54 Total: -1.32 kcal Total: -58.98 4.29 -54.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356054911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.162 kcal (2) G-P(sol) polarization free energy of solvation -58.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds