Wall clock time and date at job start Mon Mar 30 2020 01:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47380 * 2 1 4 4 C 1.46904 * 110.99839 * 302.21971 * 3 2 1 5 5 C 1.50697 * 109.47411 * 293.95624 * 4 3 2 6 6 H 1.08002 * 119.99923 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00132 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00174 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00093 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46933 * 90.00272 * 9 7 5 11 11 H 1.48496 * 109.47031 * 210.00222 * 9 7 5 12 12 H 1.48497 * 109.46969 * 330.00090 * 9 7 5 13 13 C 1.46898 * 111.00261 * 66.17375 * 3 2 1 14 14 C 1.50705 * 109.46917 * 71.71553 * 13 3 2 15 15 C 1.33241 * 125.12015 * 86.96851 * 14 13 3 16 16 C 1.38548 * 114.98865 * 179.85598 * 15 14 13 17 17 C 1.34178 * 114.71335 * 0.43677 * 16 15 14 18 18 S 1.76197 * 125.24526 * 179.79353 * 17 16 15 19 19 C 1.81401 * 103.00020 * 179.97438 * 18 17 16 20 20 S 1.75852 * 125.12188 * 267.27346 * 14 13 3 21 21 H 1.09003 * 109.47095 * 61.71467 * 1 2 3 22 22 H 1.09002 * 109.47088 * 181.70771 * 1 2 3 23 23 H 1.09001 * 109.46905 * 301.70921 * 1 2 3 24 24 H 1.09001 * 109.46979 * 239.99266 * 2 1 3 25 25 H 1.09007 * 109.47247 * 120.00052 * 2 1 3 26 26 H 1.09002 * 109.46515 * 53.95294 * 4 3 2 27 27 H 1.08999 * 109.47149 * 173.95410 * 4 3 2 28 28 H 0.96995 * 119.99908 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47428 * 191.71165 * 13 3 2 30 30 H 1.09000 * 109.46837 * 311.71714 * 13 3 2 31 31 H 1.07992 * 122.50481 * 0.04247 * 15 14 13 32 32 H 1.08007 * 122.64739 * 180.19836 * 16 15 14 33 33 H 1.09000 * 109.47429 * 60.00029 * 19 18 17 34 34 H 1.09003 * 109.46960 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.46829 * 299.99410 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5058 2.1250 -1.1603 5 6 2.0822 1.5409 -2.4242 6 1 2.7626 0.7038 -2.3709 7 6 1.7409 2.0750 -3.6486 8 7 2.2443 1.5655 -4.7517 9 14 0.5635 3.5223 -3.7409 10 1 1.3330 4.7909 -3.6807 11 1 -0.1945 3.4632 -5.0164 12 1 -0.3839 3.4632 -2.5989 13 6 1.6729 2.0660 1.2545 14 6 2.5183 1.5166 2.3746 15 6 3.7313 1.9569 2.7064 16 6 4.3200 1.3008 3.7753 17 6 3.5793 0.3157 4.3057 18 16 4.0588 -0.6981 5.6646 19 6 2.6350 -1.8028 5.8720 20 16 2.0556 0.1928 3.4358 21 1 -0.3633 0.4870 -0.9050 22 1 -0.3633 -1.0272 0.0306 23 1 -0.3633 0.5402 0.8743 24 1 1.8933 -0.5140 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 0.4188 2.0486 -1.1875 27 1 1.7945 3.1729 -1.0797 28 1 2.0040 1.9411 -5.6130 29 1 1.8578 3.1351 1.1507 30 1 0.6194 1.8994 1.4791 31 1 4.2179 2.7667 2.1833 32 1 5.2996 1.5592 4.1497 33 1 2.4820 -2.3743 4.9565 34 1 2.8233 -2.4867 6.6996 35 1 1.7443 -1.2115 6.0844 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356081846.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:25 Heat of formation + Delta-G solvation = 39.705349 kcal Electronic energy + Delta-G solvation = -16365.039241 eV Core-core repulsion = 13809.273910 eV Total energy + Delta-G solvation = -2555.765331 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.22620 -36.83431 -32.61066 -30.98492 -29.56246 -29.28501 -27.36833 -25.13067 -23.41155 -22.35132 -19.78433 -19.30988 -17.34960 -16.70720 -16.16677 -15.17425 -15.11324 -14.88663 -14.24577 -14.06937 -13.75258 -13.44785 -12.99744 -12.77725 -12.59425 -12.41736 -12.18369 -11.98774 -11.60022 -11.40589 -11.11723 -10.89127 -10.60453 -10.52403 -10.38808 -10.03178 -9.94317 -9.47025 -9.28932 -8.58293 -8.36892 -7.44781 -7.32911 -6.06387 -4.03670 0.97728 1.24181 1.37300 2.03554 2.41431 2.84773 3.26227 3.34054 3.34588 4.39743 4.78660 4.80127 4.83520 5.05411 5.25959 5.38284 5.45463 5.53068 5.64009 5.69528 5.82406 5.94295 6.02310 6.15103 6.30502 6.40635 6.48749 6.61621 6.76788 6.91047 7.02098 7.55532 7.84451 7.98709 8.63411 9.02768 9.54891 11.06768 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.038426 B = 0.004236 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.507220 B = 6609.139146 C = 6796.026909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.517 5.517 4 C 0.158 3.842 5 C -0.506 4.506 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.112 3.888 14 C -0.136 4.136 15 C -0.119 4.119 16 C -0.101 4.101 17 C -0.214 4.214 18 S -0.066 6.066 19 C -0.152 4.152 20 S 0.098 5.902 21 H 0.069 0.931 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.088 0.912 25 H 0.056 0.944 26 H -0.002 1.002 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 -3.219 20.370 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.072 4.072 3 N -0.241 5.241 4 C 0.032 3.968 5 C -0.544 4.544 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.019 4.019 14 C -0.257 4.257 15 C -0.150 4.150 16 C -0.139 4.139 17 C -0.443 4.443 18 S 0.171 5.829 19 C -0.322 4.322 20 S 0.359 5.641 21 H 0.088 0.912 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.015 0.985 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.801 -4.202 20.952 21.384 hybrid contribution -1.402 1.685 -1.091 2.449 sum -2.203 -2.517 19.861 20.140 Atomic orbital electron populations 1.22392 0.99348 1.01258 1.01787 1.22084 0.92088 0.90912 1.02134 1.62206 1.59305 1.02097 1.00449 1.20280 0.93750 0.93780 0.88985 1.20986 1.27825 1.17602 0.88023 0.90142 1.24879 0.95959 0.96746 0.95657 1.69889 1.44457 1.41799 0.97741 0.86904 0.81804 0.83673 0.77631 1.20130 1.21225 1.19308 1.20668 0.94734 0.98549 0.87903 1.24481 0.99960 0.99907 1.01327 1.20024 0.94343 1.02878 0.97751 1.19900 1.00877 0.95881 0.97267 1.25938 1.03248 1.07800 1.07297 1.85082 1.25739 1.37006 1.35121 1.23713 0.99862 1.01995 1.06623 1.84132 1.16462 1.36117 1.27389 0.91184 0.92972 0.94000 0.89393 0.92538 0.98489 0.95885 0.92665 0.89352 0.94102 0.83644 0.84248 0.89518 0.87109 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.27 9.23 37.16 0.34 -2.93 16 2 C 0.06 1.08 5.72 -3.83 -0.02 1.05 16 3 N -0.52 -10.58 4.65 -237.52 -1.10 -11.68 16 4 C 0.16 3.71 3.50 -4.98 -0.02 3.69 16 5 C -0.51 -14.09 9.10 -34.44 -0.31 -14.40 16 6 H 0.08 2.46 7.34 -52.49 -0.39 2.08 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 9 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.11 1.88 5.35 -4.97 -0.03 1.85 16 14 C -0.14 -2.09 5.37 -36.05 -0.19 -2.29 16 15 C -0.12 -1.73 10.04 -41.21 -0.41 -2.14 16 16 C -0.10 -1.36 10.13 -40.90 -0.41 -1.78 16 17 C -0.21 -2.84 6.69 29.30 0.20 -2.64 16 18 S -0.07 -0.72 22.72 -107.50 -2.44 -3.17 16 19 C -0.15 -1.23 9.84 101.05 0.99 -0.24 16 20 S 0.10 1.33 21.02 -107.50 -2.26 -0.93 16 21 H 0.07 1.37 6.33 -51.93 -0.33 1.04 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.66 6.27 -51.93 -0.33 0.34 16 24 H 0.09 1.89 6.92 -51.93 -0.36 1.53 16 25 H 0.06 0.99 6.17 -51.92 -0.32 0.67 16 26 H 0.00 -0.06 5.03 -51.93 -0.26 -0.32 16 27 H 0.02 0.54 7.29 -51.93 -0.38 0.16 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.43 7.81 -51.93 -0.41 1.02 16 30 H 0.04 0.66 6.01 -51.93 -0.31 0.35 16 31 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16 32 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 307.21 15.07 4.63 4.63 Total: -1.00 -29.98 307.21 -9.82 -39.80 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.78 Total: -0.62 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 0.03 Total: -17.95 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.33 Total: -38.22 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -4.70 Total: -4.09 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.98 -9.82 -39.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356081846.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.508 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds