Wall clock time and date at job start Mon Mar 30 2020 01:26:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46894 * 109.47380 * 2 1
4 4 C 1.46904 * 110.99839 * 302.21971 * 3 2 1
5 5 C 1.50697 * 109.47411 * 293.95624 * 4 3 2
6 6 H 1.08002 * 119.99923 * 359.97438 * 5 4 3
7 7 C 1.37872 * 120.00132 * 179.97438 * 5 4 3
8 8 N 1.31517 * 120.00174 * 179.97438 * 7 5 4
9 9 Si 1.86803 * 120.00093 * 359.97438 * 7 5 4
10 10 H 1.48498 * 109.46933 * 90.00272 * 9 7 5
11 11 H 1.48496 * 109.47031 * 210.00222 * 9 7 5
12 12 H 1.48497 * 109.46969 * 330.00090 * 9 7 5
13 13 C 1.46898 * 111.00261 * 66.17375 * 3 2 1
14 14 C 1.50705 * 109.46917 * 71.71553 * 13 3 2
15 15 C 1.33241 * 125.12015 * 86.96851 * 14 13 3
16 16 C 1.38548 * 114.98865 * 179.85598 * 15 14 13
17 17 C 1.34178 * 114.71335 * 0.43677 * 16 15 14
18 18 S 1.76197 * 125.24526 * 179.79353 * 17 16 15
19 19 C 1.81401 * 103.00020 * 179.97438 * 18 17 16
20 20 S 1.75852 * 125.12188 * 267.27346 * 14 13 3
21 21 H 1.09003 * 109.47095 * 61.71467 * 1 2 3
22 22 H 1.09002 * 109.47088 * 181.70771 * 1 2 3
23 23 H 1.09001 * 109.46905 * 301.70921 * 1 2 3
24 24 H 1.09001 * 109.46979 * 239.99266 * 2 1 3
25 25 H 1.09007 * 109.47247 * 120.00052 * 2 1 3
26 26 H 1.09002 * 109.46515 * 53.95294 * 4 3 2
27 27 H 1.08999 * 109.47149 * 173.95410 * 4 3 2
28 28 H 0.96995 * 119.99908 * 179.97438 * 8 7 5
29 29 H 1.08999 * 109.47428 * 191.71165 * 13 3 2
30 30 H 1.09000 * 109.46837 * 311.71714 * 13 3 2
31 31 H 1.07992 * 122.50481 * 0.04247 * 15 14 13
32 32 H 1.08007 * 122.64739 * 180.19836 * 16 15 14
33 33 H 1.09000 * 109.47429 * 60.00029 * 19 18 17
34 34 H 1.09003 * 109.46960 * 179.97438 * 19 18 17
35 35 H 1.09003 * 109.46829 * 299.99410 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 1.5058 2.1250 -1.1603
5 6 2.0822 1.5409 -2.4242
6 1 2.7626 0.7038 -2.3709
7 6 1.7409 2.0750 -3.6486
8 7 2.2443 1.5655 -4.7517
9 14 0.5635 3.5223 -3.7409
10 1 1.3330 4.7909 -3.6807
11 1 -0.1945 3.4632 -5.0164
12 1 -0.3839 3.4632 -2.5989
13 6 1.6729 2.0660 1.2545
14 6 2.5183 1.5166 2.3746
15 6 3.7313 1.9569 2.7064
16 6 4.3200 1.3008 3.7753
17 6 3.5793 0.3157 4.3057
18 16 4.0588 -0.6981 5.6646
19 6 2.6350 -1.8028 5.8720
20 16 2.0556 0.1928 3.4358
21 1 -0.3633 0.4870 -0.9050
22 1 -0.3633 -1.0272 0.0306
23 1 -0.3633 0.5402 0.8743
24 1 1.8933 -0.5140 -0.8899
25 1 1.8934 -0.5139 0.8900
26 1 0.4188 2.0486 -1.1875
27 1 1.7945 3.1729 -1.0797
28 1 2.0040 1.9411 -5.6130
29 1 1.8578 3.1351 1.1507
30 1 0.6194 1.8994 1.4791
31 1 4.2179 2.7667 2.1833
32 1 5.2996 1.5592 4.1497
33 1 2.4820 -2.3743 4.9565
34 1 2.8233 -2.4867 6.6996
35 1 1.7443 -1.2115 6.0844
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000356081846.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:26:25
Heat of formation + Delta-G solvation = 39.705349 kcal
Electronic energy + Delta-G solvation = -16365.039241 eV
Core-core repulsion = 13809.273910 eV
Total energy + Delta-G solvation = -2555.765331 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 271.076 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-38.22620 -36.83431 -32.61066 -30.98492 -29.56246 -29.28501 -27.36833 -25.13067
-23.41155 -22.35132 -19.78433 -19.30988 -17.34960 -16.70720 -16.16677 -15.17425
-15.11324 -14.88663 -14.24577 -14.06937 -13.75258 -13.44785 -12.99744 -12.77725
-12.59425 -12.41736 -12.18369 -11.98774 -11.60022 -11.40589 -11.11723 -10.89127
-10.60453 -10.52403 -10.38808 -10.03178 -9.94317 -9.47025 -9.28932 -8.58293
-8.36892 -7.44781 -7.32911 -6.06387 -4.03670 0.97728 1.24181 1.37300
2.03554 2.41431 2.84773 3.26227 3.34054 3.34588 4.39743 4.78660
4.80127 4.83520 5.05411 5.25959 5.38284 5.45463 5.53068 5.64009
5.69528 5.82406 5.94295 6.02310 6.15103 6.30502 6.40635 6.48749
6.61621 6.76788 6.91047 7.02098 7.55532 7.84451 7.98709 8.63411
9.02768 9.54891 11.06768
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.038426 B = 0.004236 C = 0.004119
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 728.507220 B = 6609.139146 C = 6796.026909
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C 0.056 3.944
3 N -0.517 5.517
4 C 0.158 3.842
5 C -0.506 4.506
6 H 0.081 0.919
7 C 0.069 3.931
8 N -0.900 5.900
9 Si 0.873 3.127
10 H -0.276 1.276
11 H -0.286 1.286
12 H -0.268 1.268
13 C 0.112 3.888
14 C -0.136 4.136
15 C -0.119 4.119
16 C -0.101 4.101
17 C -0.214 4.214
18 S -0.066 6.066
19 C -0.152 4.152
20 S 0.098 5.902
21 H 0.069 0.931
22 H 0.051 0.949
23 H 0.041 0.959
24 H 0.088 0.912
25 H 0.056 0.944
26 H -0.002 1.002
27 H 0.023 0.977
28 H 0.263 0.737
29 H 0.088 0.912
30 H 0.041 0.959
31 H 0.146 0.854
32 H 0.140 0.860
33 H 0.086 0.914
34 H 0.110 0.890
35 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.010 -3.219 20.370 20.648
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.248 4.248
2 C -0.072 4.072
3 N -0.241 5.241
4 C 0.032 3.968
5 C -0.544 4.544
6 H 0.099 0.901
7 C -0.132 4.132
8 N -0.539 5.539
9 Si 0.700 3.300
10 H -0.201 1.201
11 H -0.212 1.212
12 H -0.193 1.193
13 C -0.019 4.019
14 C -0.257 4.257
15 C -0.150 4.150
16 C -0.139 4.139
17 C -0.443 4.443
18 S 0.171 5.829
19 C -0.322 4.322
20 S 0.359 5.641
21 H 0.088 0.912
22 H 0.070 0.930
23 H 0.060 0.940
24 H 0.106 0.894
25 H 0.075 0.925
26 H 0.015 0.985
27 H 0.041 0.959
28 H 0.073 0.927
29 H 0.106 0.894
30 H 0.059 0.941
31 H 0.164 0.836
32 H 0.158 0.842
33 H 0.105 0.895
34 H 0.129 0.871
35 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -0.801 -4.202 20.952 21.384
hybrid contribution -1.402 1.685 -1.091 2.449
sum -2.203 -2.517 19.861 20.140
Atomic orbital electron populations
1.22392 0.99348 1.01258 1.01787 1.22084 0.92088 0.90912 1.02134
1.62206 1.59305 1.02097 1.00449 1.20280 0.93750 0.93780 0.88985
1.20986 1.27825 1.17602 0.88023 0.90142 1.24879 0.95959 0.96746
0.95657 1.69889 1.44457 1.41799 0.97741 0.86904 0.81804 0.83673
0.77631 1.20130 1.21225 1.19308 1.20668 0.94734 0.98549 0.87903
1.24481 0.99960 0.99907 1.01327 1.20024 0.94343 1.02878 0.97751
1.19900 1.00877 0.95881 0.97267 1.25938 1.03248 1.07800 1.07297
1.85082 1.25739 1.37006 1.35121 1.23713 0.99862 1.01995 1.06623
1.84132 1.16462 1.36117 1.27389 0.91184 0.92972 0.94000 0.89393
0.92538 0.98489 0.95885 0.92665 0.89352 0.94102 0.83644 0.84248
0.89518 0.87109 0.89689
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.27 9.23 37.16 0.34 -2.93 16
2 C 0.06 1.08 5.72 -3.83 -0.02 1.05 16
3 N -0.52 -10.58 4.65 -237.52 -1.10 -11.68 16
4 C 0.16 3.71 3.50 -4.98 -0.02 3.69 16
5 C -0.51 -14.09 9.10 -34.44 -0.31 -14.40 16
6 H 0.08 2.46 7.34 -52.49 -0.39 2.08 16
7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16
8 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16
9 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16
10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16
13 C 0.11 1.88 5.35 -4.97 -0.03 1.85 16
14 C -0.14 -2.09 5.37 -36.05 -0.19 -2.29 16
15 C -0.12 -1.73 10.04 -41.21 -0.41 -2.14 16
16 C -0.10 -1.36 10.13 -40.90 -0.41 -1.78 16
17 C -0.21 -2.84 6.69 29.30 0.20 -2.64 16
18 S -0.07 -0.72 22.72 -107.50 -2.44 -3.17 16
19 C -0.15 -1.23 9.84 101.05 0.99 -0.24 16
20 S 0.10 1.33 21.02 -107.50 -2.26 -0.93 16
21 H 0.07 1.37 6.33 -51.93 -0.33 1.04 16
22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
23 H 0.04 0.66 6.27 -51.93 -0.33 0.34 16
24 H 0.09 1.89 6.92 -51.93 -0.36 1.53 16
25 H 0.06 0.99 6.17 -51.92 -0.32 0.67 16
26 H 0.00 -0.06 5.03 -51.93 -0.26 -0.32 16
27 H 0.02 0.54 7.29 -51.93 -0.38 0.16 16
28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
29 H 0.09 1.43 7.81 -51.93 -0.41 1.02 16
30 H 0.04 0.66 6.01 -51.93 -0.31 0.35 16
31 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16
32 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16
33 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16
34 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16
35 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16
LS Contribution 307.21 15.07 4.63 4.63
Total: -1.00 -29.98 307.21 -9.82 -39.80
By element:
Atomic # 1 Polarization: 4.16 SS G_CDS: -4.78 Total: -0.62 kcal
Atomic # 6 Polarization: -17.99 SS G_CDS: 0.03 Total: -17.95 kcal
Atomic # 7 Polarization: -37.89 SS G_CDS: -0.33 Total: -38.22 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal
Atomic # 16 Polarization: 0.61 SS G_CDS: -4.70 Total: -4.09 kcal
Total LS contribution 4.63 Total: 4.63 kcal
Total: -29.98 -9.82 -39.80 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356081846.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.508 kcal
(2) G-P(sol) polarization free energy of solvation -29.983 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.525 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.705 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds