Wall clock time and date at job start Mon Mar 30 2020 01:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47380 * 2 1 4 4 C 1.46904 * 110.99839 * 302.21971 * 3 2 1 5 5 C 1.50697 * 109.47411 * 293.95624 * 4 3 2 6 6 H 1.08002 * 119.99923 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00132 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00174 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00093 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46933 * 90.00272 * 9 7 5 11 11 H 1.48496 * 109.47031 * 210.00222 * 9 7 5 12 12 H 1.48497 * 109.46969 * 330.00090 * 9 7 5 13 13 C 1.46898 * 111.00261 * 66.17375 * 3 2 1 14 14 C 1.50705 * 109.46917 * 71.71553 * 13 3 2 15 15 C 1.33241 * 125.12015 * 86.96851 * 14 13 3 16 16 C 1.38548 * 114.98865 * 179.85598 * 15 14 13 17 17 C 1.34178 * 114.71335 * 0.43677 * 16 15 14 18 18 S 1.76197 * 125.24526 * 179.79353 * 17 16 15 19 19 C 1.81401 * 103.00020 * 179.97438 * 18 17 16 20 20 S 1.75852 * 125.12188 * 267.27346 * 14 13 3 21 21 H 1.09003 * 109.47095 * 61.71467 * 1 2 3 22 22 H 1.09002 * 109.47088 * 181.70771 * 1 2 3 23 23 H 1.09001 * 109.46905 * 301.70921 * 1 2 3 24 24 H 1.09001 * 109.46979 * 239.99266 * 2 1 3 25 25 H 1.09007 * 109.47247 * 120.00052 * 2 1 3 26 26 H 1.09002 * 109.46515 * 53.95294 * 4 3 2 27 27 H 1.08999 * 109.47149 * 173.95410 * 4 3 2 28 28 H 0.96995 * 119.99908 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47428 * 191.71165 * 13 3 2 30 30 H 1.09000 * 109.46837 * 311.71714 * 13 3 2 31 31 H 1.07992 * 122.50481 * 0.04247 * 15 14 13 32 32 H 1.08007 * 122.64739 * 180.19836 * 16 15 14 33 33 H 1.09000 * 109.47429 * 60.00029 * 19 18 17 34 34 H 1.09003 * 109.46960 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.46829 * 299.99410 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5058 2.1250 -1.1603 5 6 2.0822 1.5409 -2.4242 6 1 2.7626 0.7038 -2.3709 7 6 1.7409 2.0750 -3.6486 8 7 2.2443 1.5655 -4.7517 9 14 0.5635 3.5223 -3.7409 10 1 1.3330 4.7909 -3.6807 11 1 -0.1945 3.4632 -5.0164 12 1 -0.3839 3.4632 -2.5989 13 6 1.6729 2.0660 1.2545 14 6 2.5183 1.5166 2.3746 15 6 3.7313 1.9569 2.7064 16 6 4.3200 1.3008 3.7753 17 6 3.5793 0.3157 4.3057 18 16 4.0588 -0.6981 5.6646 19 6 2.6350 -1.8028 5.8720 20 16 2.0556 0.1928 3.4358 21 1 -0.3633 0.4870 -0.9050 22 1 -0.3633 -1.0272 0.0306 23 1 -0.3633 0.5402 0.8743 24 1 1.8933 -0.5140 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 0.4188 2.0486 -1.1875 27 1 1.7945 3.1729 -1.0797 28 1 2.0040 1.9411 -5.6130 29 1 1.8578 3.1351 1.1507 30 1 0.6194 1.8994 1.4791 31 1 4.2179 2.7667 2.1833 32 1 5.2996 1.5592 4.1497 33 1 2.4820 -2.3743 4.9565 34 1 2.8233 -2.4867 6.6996 35 1 1.7443 -1.2115 6.0844 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356081846.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:25 Heat of formation + Delta-G solvation = 21.499000 kcal Electronic energy + Delta-G solvation = -16365.828727 eV Core-core repulsion = 13809.273910 eV Total energy + Delta-G solvation = -2556.554817 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.57543 -38.13763 -34.71856 -32.26205 -31.22049 -30.00539 -28.92615 -26.50688 -24.92910 -23.83766 -21.25574 -20.53054 -18.95127 -18.31356 -17.24646 -16.70847 -16.57459 -16.12718 -15.95124 -14.96817 -14.83581 -14.56458 -14.47497 -14.27802 -13.82893 -13.69942 -13.42251 -13.29143 -13.06694 -12.81236 -12.65191 -12.45946 -12.28734 -11.97395 -11.80701 -11.56999 -11.42290 -11.24503 -10.75797 -10.52199 -9.42544 -8.98224 -8.30966 -8.25697 -6.28638 -0.11401 0.34014 0.39317 0.96378 1.36267 1.37128 1.47361 1.56361 1.75333 2.35688 3.07777 3.33363 3.83622 4.16451 4.18189 4.22524 4.23474 4.35447 4.46552 4.55584 4.61804 4.65061 4.74434 4.79506 4.91114 5.05208 5.08986 5.22885 5.31218 5.38597 5.51939 5.57026 5.98574 6.34181 6.64665 6.77455 7.34431 8.91043 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.038426 B = 0.004236 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.507220 B = 6609.139146 C = 6796.026909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.059 3.941 3 N -0.535 5.535 4 C 0.168 3.832 5 C -0.510 4.510 6 H 0.034 0.966 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.248 1.248 13 C 0.116 3.884 14 C -0.166 4.166 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.215 4.215 18 S -0.071 6.071 19 C -0.149 4.149 20 S 0.117 5.883 21 H 0.045 0.955 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.003 0.997 27 H 0.029 0.971 28 H 0.266 0.734 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -2.771 22.776 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.069 4.069 3 N -0.259 5.259 4 C 0.042 3.958 5 C -0.548 4.548 6 H 0.052 0.948 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.768 3.232 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.171 1.171 13 C -0.013 4.013 14 C -0.287 4.287 15 C -0.149 4.149 16 C -0.155 4.155 17 C -0.443 4.443 18 S 0.166 5.834 19 C -0.318 4.318 20 S 0.378 5.622 21 H 0.064 0.936 22 H 0.091 0.909 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.021 0.979 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.105 0.895 34 H 0.155 0.845 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.079 -3.765 23.395 23.787 hybrid contribution -0.897 1.388 -1.715 2.381 sum -2.977 -2.377 21.681 22.013 Atomic orbital electron populations 1.22289 0.97600 1.02671 1.01355 1.21988 0.93518 0.90244 1.01135 1.62050 1.60033 1.02588 1.01215 1.20024 0.93607 0.93864 0.88342 1.21205 1.26856 1.16309 0.90451 0.94767 1.25814 0.97977 1.00034 0.95042 1.70055 1.46580 1.43943 0.98538 0.85752 0.79595 0.79593 0.78242 1.19080 1.21029 1.17112 1.20625 0.95643 0.98585 0.86441 1.24366 1.00531 1.01681 1.02108 1.20204 0.94139 1.02754 0.97808 1.20062 1.01770 0.96290 0.97374 1.26297 1.02833 1.07642 1.07538 1.85144 1.27486 1.37077 1.33691 1.23855 0.98610 1.01709 1.07676 1.83928 1.16473 1.35032 1.26757 0.93598 0.90899 0.92048 0.93090 0.90797 0.97928 0.95339 0.92541 0.88849 0.93024 0.83422 0.82764 0.89531 0.84479 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.00 9.23 71.98 0.66 -5.34 16 2 C 0.06 2.27 5.72 86.30 0.49 2.77 16 3 N -0.54 -21.77 4.65 -905.36 -4.21 -25.98 16 4 C 0.17 7.85 3.50 85.56 0.30 8.15 16 5 C -0.51 -29.25 9.10 25.60 0.23 -29.02 16 6 H 0.03 2.22 7.34 -2.91 -0.02 2.20 16 7 C 0.01 0.48 5.47 84.65 0.46 0.94 16 8 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 9 Si 0.94 43.45 27.47 68.60 1.88 45.34 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 13 C 0.12 3.75 5.35 85.56 0.46 4.21 16 14 C -0.17 -4.88 5.37 24.56 0.13 -4.75 16 15 C -0.12 -3.28 10.04 21.22 0.21 -3.07 16 16 C -0.12 -2.99 10.13 21.42 0.22 -2.77 16 17 C -0.21 -5.27 6.69 66.89 0.45 -4.82 16 18 S -0.07 -1.39 22.72 -56.49 -1.28 -2.67 16 19 C -0.15 -1.96 9.84 113.37 1.12 -0.85 16 20 S 0.12 2.93 21.02 -56.49 -1.19 1.75 16 21 H 0.04 1.74 6.33 -2.39 -0.02 1.73 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.06 1.79 6.27 -2.39 -0.01 1.77 16 24 H 0.05 2.30 6.92 -2.39 -0.02 2.28 16 25 H 0.07 2.53 6.17 -2.38 -0.01 2.52 16 26 H 0.00 0.14 5.03 -2.39 -0.01 0.13 16 27 H 0.03 1.30 7.29 -2.39 -0.02 1.28 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.09 2.87 7.81 -2.39 -0.02 2.85 16 30 H 0.05 1.55 6.01 -2.39 -0.01 1.53 16 31 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 32 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -65.97 307.21 1.26 -64.70 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.02 Total: 10.63 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 4.74 Total: -34.56 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -3.91 Total: -85.18 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.34 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.47 Total: -0.93 kcal Total: -65.97 1.26 -64.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356081846.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.203 kcal (2) G-P(sol) polarization free energy of solvation -65.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds