Wall clock time and date at job start Mon Mar 30 2020 00:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34229 * 117.00565 * 2 1 4 4 O 1.20834 * 119.99446 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00566 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47333 * 179.97438 * 5 3 2 7 7 S 1.81001 * 109.47038 * 180.02562 * 6 5 3 8 8 C 1.76200 * 99.99813 * 180.02562 * 7 6 5 9 9 N 1.32394 * 126.25874 * 359.97384 * 8 7 6 10 10 N 1.28516 * 110.20034 * 180.02562 * 9 8 7 11 11 C 1.33095 * 109.75073 * 0.02562 * 10 9 8 12 12 C 1.39771 * 126.56547 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00111 * 188.22178 * 12 11 10 14 14 C 1.40084 * 120.00218 * 8.21795 * 12 11 10 15 15 N 1.30817 * 119.99946 * 191.23483 * 14 12 11 16 16 Si 1.86798 * 119.99751 * 11.23165 * 14 12 11 17 17 H 1.48506 * 109.46877 * 270.00124 * 16 14 12 18 18 H 1.48499 * 109.47207 * 29.99996 * 16 14 12 19 19 H 1.48496 * 109.47289 * 150.00071 * 16 14 12 20 20 N 1.36672 * 126.26147 * 180.30773 * 8 7 6 21 21 C 1.46501 * 127.14877 * 359.97438 * 20 8 7 22 22 H 1.09007 * 109.46890 * 60.00202 * 1 2 3 23 23 H 1.09003 * 109.47589 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47227 * 300.00436 * 1 2 3 25 25 H 1.09003 * 109.46586 * 59.99982 * 5 3 2 26 26 H 1.08994 * 109.47254 * 300.00516 * 5 3 2 27 27 H 1.09004 * 109.46463 * 60.00166 * 6 5 3 28 28 H 1.08994 * 109.47549 * 300.00552 * 6 5 3 29 29 H 0.96998 * 119.99838 * 354.77302 * 15 14 12 30 30 H 1.09004 * 109.46941 * 270.14226 * 21 20 8 31 31 H 1.09008 * 109.47284 * 30.13706 * 21 20 8 32 32 H 1.08993 * 109.47266 * 150.14108 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 16 5.8077 2.8366 -0.0002 8 6 6.0225 4.5855 -0.0004 9 7 5.0583 5.4928 -0.0009 10 7 5.5617 6.6753 -0.0014 11 6 6.8904 6.5984 -0.0018 12 6 7.7865 7.6711 -0.0028 13 1 8.8431 7.4920 -0.1368 14 6 7.3142 8.9786 0.1698 15 7 8.1083 9.9950 -0.0481 16 14 5.5503 9.2705 0.7110 17 1 4.6769 9.3780 -0.4852 18 1 5.0971 8.1355 1.5545 19 1 5.4748 10.5301 1.4939 20 7 7.2148 5.2535 -0.0064 21 6 8.5574 4.6672 -0.0134 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 3.9563 0.7805 -0.8892 26 1 3.9557 0.7808 0.8907 27 1 3.6101 3.2366 0.8894 28 1 3.6108 3.2356 -0.8905 29 1 9.0438 9.8439 -0.2552 30 1 8.8946 4.5193 1.0125 31 1 8.5320 3.7073 -0.5295 32 1 9.2443 5.3386 -0.5284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357095124.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:14 Heat of formation + Delta-G solvation = -54.448578 kcal Electronic energy + Delta-G solvation = -17884.404004 eV Core-core repulsion = 14778.262638 eV Total energy + Delta-G solvation = -3106.141366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.83672 -41.52194 -37.68340 -35.93722 -35.41916 -34.24486 -31.98765 -28.99367 -28.41024 -27.31914 -25.66681 -23.33530 -22.26564 -21.58720 -20.19114 -18.90563 -18.22695 -17.76789 -17.63851 -17.02457 -16.82523 -15.86191 -15.78461 -15.58009 -15.07059 -14.69435 -14.22239 -14.11907 -14.02260 -13.67347 -13.46546 -13.09015 -12.92746 -12.86370 -12.57241 -11.99306 -11.81613 -11.79587 -11.62410 -11.52272 -11.39694 -10.87202 -10.55039 -10.35460 -9.49694 -8.69024 -6.84966 0.20377 0.98330 1.03522 1.12713 1.49700 1.60497 1.84886 1.94402 2.08633 2.22629 2.39515 3.03949 3.44634 3.84187 3.95156 3.96545 4.32060 4.33251 4.36530 4.42820 4.50149 4.58643 4.59595 4.70140 4.73045 4.88053 5.23859 5.34188 5.37641 5.70650 6.00937 6.39916 6.58374 6.67614 7.92157 8.16774 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030267 B = 0.004337 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.890450 B = 6454.880420 C = 7324.473249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.468 3.532 4 O -0.542 6.542 5 C -0.088 4.088 6 C -0.092 4.092 7 S 0.039 5.961 8 C 0.073 3.927 9 N -0.315 5.315 10 N -0.445 5.445 11 C 0.324 3.676 12 C -0.510 4.510 13 H 0.085 0.915 14 C 0.045 3.955 15 N -0.823 5.823 16 Si 1.136 2.864 17 H -0.289 1.289 18 H -0.277 1.277 19 H -0.294 1.294 20 N -0.514 5.514 21 C 0.092 3.908 22 H 0.059 0.941 23 H 0.136 0.864 24 H 0.059 0.941 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.287 0.713 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.088 -22.059 0.550 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.311 3.689 4 O -0.432 6.432 5 C -0.126 4.126 6 C -0.242 4.242 7 S 0.265 5.735 8 C -0.302 4.302 9 N -0.158 5.158 10 N -0.293 5.293 11 C 0.077 3.923 12 C -0.551 4.551 13 H 0.103 0.897 14 C -0.176 4.176 15 N -0.449 5.449 16 Si 0.964 3.036 17 H -0.216 1.216 18 H -0.203 1.203 19 H -0.223 1.223 20 N -0.214 5.214 21 C -0.050 4.050 22 H 0.077 0.923 23 H 0.154 0.846 24 H 0.078 0.922 25 H 0.164 0.836 26 H 0.164 0.836 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.899 -20.863 0.801 21.989 hybrid contribution 1.569 0.051 -0.504 1.649 sum -5.330 -20.813 0.297 21.486 Atomic orbital electron populations 1.23558 0.74832 1.05804 1.02377 1.86480 1.24882 1.32194 1.83737 1.23883 0.92461 0.81211 0.71324 1.90744 1.68110 1.37744 1.46595 1.21083 0.86922 0.94740 1.09890 1.23147 0.94127 1.00080 1.06835 1.83997 1.06421 0.88482 1.94555 1.26619 0.85396 1.01210 1.17001 1.74251 1.26769 0.95679 1.19056 1.74099 1.05296 1.14226 1.35674 1.21762 0.92086 0.83493 0.95005 1.19365 0.94716 0.90846 1.50137 0.89680 1.27676 1.09264 0.90779 0.89841 1.70648 1.08046 1.33832 1.32332 0.82431 0.69687 0.73541 0.77977 1.21578 1.20321 1.22257 1.46228 1.07176 1.05311 1.62671 1.21941 0.79486 0.99713 1.03896 0.92258 0.84605 0.92239 0.83600 0.83585 0.90132 0.90138 0.90164 0.90143 0.87933 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.36 10.56 -51.41 -0.54 -6.91 16 3 C 0.47 10.42 7.96 71.24 0.57 10.98 16 4 O -0.54 -16.97 15.73 21.94 0.35 -16.63 16 5 C -0.09 -1.50 5.81 29.85 0.17 -1.33 16 6 C -0.09 -2.56 4.51 71.98 0.32 -2.24 16 7 S 0.04 1.12 21.79 -56.49 -1.23 -0.11 16 8 C 0.07 3.20 8.09 179.18 1.45 4.65 16 9 N -0.31 -16.64 11.62 -56.17 -0.65 -17.29 16 10 N -0.44 -25.59 7.50 -55.02 -0.41 -26.00 16 11 C 0.32 17.51 7.21 133.23 0.96 18.47 16 12 C -0.51 -27.76 9.47 23.09 0.22 -27.54 16 13 H 0.09 4.46 7.46 -2.91 -0.02 4.44 16 14 C 0.04 2.47 5.52 85.29 0.47 2.94 16 15 N -0.82 -44.82 13.65 21.86 0.30 -44.52 16 16 Si 1.14 58.55 26.40 68.60 1.81 60.36 16 17 H -0.29 -15.27 7.11 99.48 0.71 -14.56 16 18 H -0.28 -15.14 6.25 99.48 0.62 -14.52 16 19 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 20 N -0.51 -23.15 3.26 -543.62 -1.77 -24.92 16 21 C 0.09 2.95 10.89 127.77 1.39 4.34 16 22 H 0.06 0.86 8.13 -2.38 -0.02 0.84 16 23 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 25 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 2.63 8.10 -2.39 -0.02 2.61 16 28 H 0.08 2.62 8.10 -2.40 -0.02 2.60 16 29 H 0.29 14.82 8.73 -92.71 -0.81 14.01 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.10 2.61 7.85 -2.38 -0.02 2.59 16 32 H 0.08 2.61 7.47 -2.39 -0.02 2.59 16 Total: -1.00 -75.27 297.53 5.61 -69.66 By element: Atomic # 1 Polarization: -6.50 SS G_CDS: 1.01 Total: -5.48 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.75 Total: 11.84 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -2.54 Total: -112.73 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.20 Total: -23.54 kcal Atomic # 14 Polarization: 58.55 SS G_CDS: 1.81 Total: 60.36 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -1.23 Total: -0.11 kcal Total: -75.27 5.61 -69.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357095124.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.213 kcal (2) G-P(sol) polarization free energy of solvation -75.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds