Wall clock time and date at job start Mon Mar 30 2020 01:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48497 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47127 * 299.99715 * 3 2 1 6 6 H 1.48497 * 109.46932 * 59.99835 * 3 2 1 7 7 C 1.38794 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00009 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00312 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00210 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47416 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99562 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00245 * 180.02562 * 11 10 9 14 14 C 1.47681 * 125.83046 * 359.97438 * 13 11 10 15 15 C 1.54984 * 104.85532 * 203.99572 * 14 13 11 16 16 C 1.55340 * 101.68254 * 323.44740 * 15 14 13 17 17 C 1.46139 * 125.83255 * 180.02562 * 13 11 10 18 18 C 1.54005 * 111.02000 * 300.04419 * 17 13 11 19 19 C 1.55173 * 101.89762 * 100.09968 * 18 17 13 20 20 O 1.44449 * 103.59896 * 36.36304 * 19 18 17 21 21 C 1.43981 * 107.00452 * 320.43467 * 20 19 18 22 22 H 0.97002 * 119.99583 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46970 * 59.99786 * 10 9 7 24 24 H 1.09001 * 109.47324 * 300.00349 * 10 9 7 25 25 H 1.08995 * 110.36292 * 322.84045 * 14 13 11 26 26 H 1.09001 * 110.35825 * 85.04585 * 14 13 11 27 27 H 1.09000 * 110.98387 * 205.35079 * 15 14 13 28 28 H 1.08998 * 110.98664 * 81.54694 * 15 14 13 29 29 H 1.09003 * 110.76840 * 276.51825 * 16 15 14 30 30 H 1.08998 * 110.76809 * 153.12050 * 16 15 14 31 31 H 1.08996 * 110.95143 * 218.25727 * 18 17 13 32 32 H 1.09003 * 110.94375 * 341.95426 * 18 17 13 33 33 H 1.08998 * 110.59713 * 277.82951 * 19 18 17 34 34 H 1.09000 * 110.72782 * 154.95563 * 19 18 17 35 35 H 1.09001 * 109.92685 * 266.99395 * 21 20 19 36 36 H 1.08997 * 109.92613 * 145.66503 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0018 14 6 4.3178 -6.2495 0.0014 15 6 4.8010 -7.5906 -0.6068 16 6 3.7620 -8.5905 -0.0292 17 6 2.4731 -7.7568 0.0019 18 6 1.6362 -8.1082 1.2460 19 6 0.1942 -8.1056 0.6727 20 8 0.3558 -8.6504 -0.6553 21 6 1.5735 -8.0997 -1.1911 22 1 -0.4849 0.8401 -0.0004 23 1 3.1243 -3.7314 0.8905 24 1 3.1244 -3.7314 -0.8894 25 1 4.6444 -5.4132 -0.6165 26 1 4.6908 -6.1366 1.0194 27 1 5.8076 -7.8334 -0.2663 28 1 4.7545 -7.5647 -1.6955 29 1 4.0446 -8.9040 0.9758 30 1 3.6484 -9.4525 -0.6865 31 1 1.9016 -9.0937 1.6287 32 1 1.7494 -7.3482 2.0192 33 1 -0.1978 -7.0897 0.6255 34 1 -0.4598 -8.7403 1.2707 35 1 1.3536 -7.1976 -1.7620 36 1 2.0651 -8.8351 -1.8279 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357316363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:02 Heat of formation + Delta-G solvation = -72.888466 kcal Electronic energy + Delta-G solvation = -19284.351418 eV Core-core repulsion = 16280.950782 eV Total energy + Delta-G solvation = -3003.400636 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.94117 -38.01475 -36.86789 -32.45225 -32.09098 -31.35662 -29.20387 -28.74049 -25.52799 -25.15820 -23.12680 -22.12224 -21.06508 -18.71227 -17.66719 -16.77857 -16.68688 -15.56004 -15.26374 -14.88876 -14.82379 -14.68968 -14.36650 -13.79159 -13.62529 -13.26626 -12.84656 -12.61372 -12.59584 -12.07963 -11.82859 -11.69813 -11.42117 -11.14641 -11.08742 -11.03656 -10.87064 -10.81661 -10.74165 -9.84658 -9.75008 -9.09489 -9.02165 -8.56369 -8.25794 -6.52679 -6.23993 -3.94761 2.82252 2.97323 3.20002 3.23921 3.29407 3.56086 4.04627 4.17951 4.27532 4.31883 4.51853 4.81948 4.90061 4.99841 5.07492 5.11423 5.27903 5.30748 5.42732 5.46974 5.56753 5.58688 5.64122 5.73705 5.77876 5.82724 5.89128 5.91687 6.00788 6.09642 6.29444 6.53485 6.97942 7.57492 7.62636 8.33098 8.54277 9.21533 10.83499 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.031476 B = 0.004793 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.354191 B = 5840.237986 C = 6477.113204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.147 4.147 11 C 0.548 3.452 12 O -0.506 6.506 13 N -0.614 5.614 14 C 0.099 3.901 15 C -0.134 4.134 16 C -0.117 4.117 17 C 0.132 3.868 18 C -0.155 4.155 19 C 0.038 3.962 20 O -0.379 6.379 21 C 0.052 3.948 22 H 0.268 0.732 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.458 -16.826 0.722 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.297 4.297 11 C 0.338 3.662 12 O -0.380 6.380 13 N -0.352 5.352 14 C -0.024 4.024 15 C -0.172 4.172 16 C -0.155 4.155 17 C 0.046 3.954 18 C -0.193 4.193 19 C -0.038 4.038 20 O -0.297 6.297 21 C -0.026 4.026 22 H 0.078 0.922 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.301 -17.067 0.615 18.989 hybrid contribution 2.228 1.498 0.155 2.689 sum 10.529 -15.569 0.770 18.811 Atomic orbital electron populations 1.70032 1.05955 1.27376 1.46888 1.24991 0.95025 0.99037 0.94503 0.86113 0.79565 0.81865 0.77931 1.19626 1.20536 1.20546 1.22896 0.94910 0.91607 1.58926 0.90915 1.85398 1.04791 0.96319 1.96705 1.23519 1.06540 0.94913 1.04746 1.20070 0.85807 0.85364 0.75005 1.90621 1.14856 1.84750 1.47786 1.48488 1.06771 1.04421 1.75496 1.22381 0.80193 0.98640 1.01169 1.22849 0.99031 0.94178 1.01145 1.22639 0.92903 0.97523 1.02394 1.21661 0.95874 0.82224 0.95653 1.23359 0.96375 1.02128 0.97488 1.23904 0.95857 1.01539 0.82512 1.88835 1.41596 1.68612 1.30697 1.23383 0.85134 0.98965 0.95105 0.92211 0.89360 0.89347 0.90163 0.91239 0.89709 0.90407 0.90116 0.89684 0.90273 0.89921 0.88471 0.90012 0.91635 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.96 5.18 36.01 0.19 -2.77 16 11 C 0.55 10.24 7.18 -10.99 -0.08 10.16 16 12 O -0.51 -11.05 11.89 5.56 0.07 -10.98 16 13 N -0.61 -8.66 2.81 -155.88 -0.44 -9.10 16 14 C 0.10 1.02 6.72 -2.35 -0.02 1.00 16 15 C -0.13 -1.02 7.09 -24.44 -0.17 -1.19 16 16 C -0.12 -0.98 5.92 -25.21 -0.15 -1.13 16 17 C 0.13 1.64 0.88 -131.05 -0.12 1.52 16 18 C -0.15 -1.96 5.91 -25.06 -0.15 -2.11 16 19 C 0.04 0.57 7.24 38.31 0.28 0.85 16 20 O -0.38 -6.11 11.54 -35.23 -0.41 -6.51 16 21 C 0.05 0.74 6.65 37.32 0.25 0.98 16 22 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 24 H 0.09 1.67 7.86 -51.92 -0.41 1.26 16 25 H 0.08 0.81 7.51 -51.93 -0.39 0.42 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.59 7.77 -51.93 -0.40 0.19 16 30 H 0.08 0.62 7.35 -51.93 -0.38 0.24 16 31 H 0.08 0.81 7.75 -51.93 -0.40 0.41 16 32 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 33 H 0.10 1.78 5.40 -51.93 -0.28 1.50 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.10 7.11 -51.93 -0.37 0.73 16 36 H 0.08 0.94 7.25 -51.93 -0.38 0.56 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -33.50 301.53 -7.59 -41.10 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.09 Total: -0.65 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 0.23 Total: -5.54 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.30 Total: -34.44 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.34 Total: -17.50 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.50 -7.59 -41.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357316363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.792 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds