Wall clock time and date at job start Mon Mar 30 2020 01:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48497 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47127 * 299.99715 * 3 2 1 6 6 H 1.48497 * 109.46932 * 59.99835 * 3 2 1 7 7 C 1.38794 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00009 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00312 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00210 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47416 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99562 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00245 * 180.02562 * 11 10 9 14 14 C 1.47681 * 125.83046 * 359.97438 * 13 11 10 15 15 C 1.54984 * 104.85532 * 203.99572 * 14 13 11 16 16 C 1.55340 * 101.68254 * 323.44740 * 15 14 13 17 17 C 1.46139 * 125.83255 * 180.02562 * 13 11 10 18 18 C 1.54005 * 111.02000 * 300.04419 * 17 13 11 19 19 C 1.55173 * 101.89762 * 100.09968 * 18 17 13 20 20 O 1.44449 * 103.59896 * 36.36304 * 19 18 17 21 21 C 1.43981 * 107.00452 * 320.43467 * 20 19 18 22 22 H 0.97002 * 119.99583 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46970 * 59.99786 * 10 9 7 24 24 H 1.09001 * 109.47324 * 300.00349 * 10 9 7 25 25 H 1.08995 * 110.36292 * 322.84045 * 14 13 11 26 26 H 1.09001 * 110.35825 * 85.04585 * 14 13 11 27 27 H 1.09000 * 110.98387 * 205.35079 * 15 14 13 28 28 H 1.08998 * 110.98664 * 81.54694 * 15 14 13 29 29 H 1.09003 * 110.76840 * 276.51825 * 16 15 14 30 30 H 1.08998 * 110.76809 * 153.12050 * 16 15 14 31 31 H 1.08996 * 110.95143 * 218.25727 * 18 17 13 32 32 H 1.09003 * 110.94375 * 341.95426 * 18 17 13 33 33 H 1.08998 * 110.59713 * 277.82951 * 19 18 17 34 34 H 1.09000 * 110.72782 * 154.95563 * 19 18 17 35 35 H 1.09001 * 109.92685 * 266.99395 * 21 20 19 36 36 H 1.08997 * 109.92613 * 145.66503 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0018 14 6 4.3178 -6.2495 0.0014 15 6 4.8010 -7.5906 -0.6068 16 6 3.7620 -8.5905 -0.0292 17 6 2.4731 -7.7568 0.0019 18 6 1.6362 -8.1082 1.2460 19 6 0.1942 -8.1056 0.6727 20 8 0.3558 -8.6504 -0.6553 21 6 1.5735 -8.0997 -1.1911 22 1 -0.4849 0.8401 -0.0004 23 1 3.1243 -3.7314 0.8905 24 1 3.1244 -3.7314 -0.8894 25 1 4.6444 -5.4132 -0.6165 26 1 4.6908 -6.1366 1.0194 27 1 5.8076 -7.8334 -0.2663 28 1 4.7545 -7.5647 -1.6955 29 1 4.0446 -8.9040 0.9758 30 1 3.6484 -9.4525 -0.6865 31 1 1.9016 -9.0937 1.6287 32 1 1.7494 -7.3482 2.0192 33 1 -0.1978 -7.0897 0.6255 34 1 -0.4598 -8.7403 1.2707 35 1 1.3536 -7.1976 -1.7620 36 1 2.0651 -8.8351 -1.8279 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357316363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:01 Heat of formation + Delta-G solvation = -96.261931 kcal Electronic energy + Delta-G solvation = -19285.364967 eV Core-core repulsion = 16280.950782 eV Total energy + Delta-G solvation = -3004.414185 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.05057 -39.37062 -37.95952 -34.61012 -33.27849 -32.30630 -30.42218 -30.06644 -27.69330 -26.10246 -24.17466 -23.24477 -21.97761 -20.17291 -19.40105 -18.08298 -17.76313 -16.90979 -16.80863 -16.52914 -16.31643 -15.86591 -15.67044 -15.24713 -14.71864 -14.43411 -14.19054 -14.00277 -13.52028 -13.38403 -13.17884 -12.93345 -12.87683 -12.77730 -12.60373 -12.36229 -12.00434 -11.75094 -11.67175 -11.61457 -11.17883 -11.09294 -10.36250 -10.29964 -9.71925 -8.69924 -8.37081 -6.15627 1.21666 1.40160 1.43134 1.53147 1.55378 2.03491 2.25146 2.97365 2.98575 3.20133 3.41111 3.49224 3.65101 3.87365 3.91630 4.10322 4.17491 4.25920 4.30529 4.35792 4.43309 4.61507 4.66804 4.70704 4.80299 4.84634 4.97474 5.00223 5.08053 5.15533 5.32314 5.39395 5.46439 5.82737 6.17523 6.38738 7.04305 7.15568 8.72502 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.031476 B = 0.004793 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.354191 B = 5840.237986 C = 6477.113204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.119 4.119 11 C 0.544 3.456 12 O -0.549 6.549 13 N -0.607 5.607 14 C 0.085 3.915 15 C -0.122 4.122 16 C -0.107 4.107 17 C 0.126 3.874 18 C -0.147 4.147 19 C 0.031 3.969 20 O -0.396 6.396 21 C 0.048 3.952 22 H 0.271 0.729 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.027 0.973 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.006 -18.195 1.022 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.270 4.270 11 C 0.332 3.668 12 O -0.426 6.426 13 N -0.342 5.342 14 C -0.036 4.036 15 C -0.160 4.160 16 C -0.144 4.144 17 C 0.040 3.960 18 C -0.185 4.185 19 C -0.045 4.045 20 O -0.315 6.315 21 C -0.030 4.030 22 H 0.080 0.920 23 H 0.122 0.878 24 H 0.121 0.879 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.136 0.864 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.045 0.955 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.901 -18.475 0.914 21.995 hybrid contribution 1.129 1.807 0.044 2.131 sum 13.030 -16.668 0.958 21.178 Atomic orbital electron populations 1.70196 1.08027 1.28595 1.48040 1.26136 0.95951 1.03341 0.93651 0.84892 0.78616 0.76235 0.78126 1.17959 1.19902 1.19857 1.23221 0.95294 0.91954 1.58888 0.90000 1.85580 1.10342 0.99173 1.97011 1.23304 1.03414 0.94226 1.06079 1.19784 0.85743 0.85814 0.75453 1.90636 1.16697 1.85269 1.50021 1.48434 1.08210 1.04322 1.73213 1.22784 0.77451 1.00777 1.02596 1.22866 1.00275 0.91699 1.01137 1.22689 0.90128 0.97338 1.04285 1.21964 0.97937 0.81572 0.94520 1.23357 0.94491 1.03532 0.97131 1.23874 0.98106 0.99634 0.82838 1.88808 1.42940 1.68464 1.31313 1.23532 0.85113 0.98347 0.96005 0.91963 0.87789 0.87913 0.90128 0.89643 0.86445 0.90251 0.88070 0.87694 0.86829 0.91270 0.92685 0.88114 0.95457 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 2 C 0.01 0.79 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.66 29.55 68.60 2.03 45.68 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -31.36 9.50 67.95 0.65 -30.71 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 10 C -0.12 -4.86 5.18 71.24 0.37 -4.49 16 11 C 0.54 20.76 7.18 87.66 0.63 21.39 16 12 O -0.55 -25.44 11.89 -3.03 -0.04 -25.48 16 13 N -0.61 -16.38 2.81 -765.47 -2.15 -18.53 16 14 C 0.09 1.49 6.72 86.83 0.58 2.07 16 15 C -0.12 -1.28 7.09 32.08 0.23 -1.05 16 16 C -0.11 -1.28 5.92 31.58 0.19 -1.10 16 17 C 0.13 2.86 0.88 4.29 0.00 2.86 16 18 C -0.15 -3.49 5.91 31.68 0.19 -3.30 16 19 C 0.03 0.96 7.24 72.73 0.53 1.49 16 20 O -0.40 -12.81 11.54 -148.98 -1.72 -14.53 16 21 C 0.05 1.31 6.65 72.08 0.48 1.79 16 22 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 23 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 24 H 0.10 3.85 7.86 -2.39 -0.02 3.83 16 25 H 0.08 1.42 7.51 -2.39 -0.02 1.40 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 27 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.89 7.77 -2.39 -0.02 0.87 16 30 H 0.10 0.94 7.35 -2.39 -0.02 0.92 16 31 H 0.11 1.91 7.75 -2.39 -0.02 1.89 16 32 H 0.07 1.84 8.04 -2.39 -0.02 1.82 16 33 H 0.05 2.18 5.40 -2.39 -0.01 2.16 16 34 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.03 0.95 7.11 -2.39 -0.02 0.93 16 36 H 0.12 2.34 7.25 -2.39 -0.02 2.32 16 Total: -1.00 -78.00 301.53 2.62 -75.38 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 1.07 Total: 12.87 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 4.30 Total: -9.78 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.87 Total: -74.65 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -1.75 Total: -40.01 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -78.00 2.62 -75.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357316363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.884 kcal (2) G-P(sol) polarization free energy of solvation -78.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds