Wall clock time and date at job start Mon Mar 30 2020 01:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29023 * 124.91372 * 2 1 4 4 C 1.31784 * 117.12236 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74680 * 180.02562 * 4 3 2 6 6 C 1.33639 * 114.50230 * 0.02562 * 4 3 2 7 7 C 1.50692 * 126.03962 * 180.02562 * 6 4 3 8 8 S 1.81395 * 109.47084 * 90.00032 * 7 6 4 9 9 C 1.81406 * 103.00107 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46988 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46949 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47003 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00174 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00074 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00397 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99894 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47641 * 89.99570 * 16 14 12 18 18 H 1.48498 * 109.46790 * 210.00176 * 16 14 12 19 19 H 1.48504 * 109.46550 * 329.99356 * 16 14 12 20 20 S 1.70979 * 124.91513 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47086 * 90.02626 * 1 2 3 22 22 H 1.09006 * 109.46552 * 210.01924 * 1 2 3 23 23 H 1.08997 * 109.47102 * 330.01872 * 1 2 3 24 24 H 1.08990 * 109.47046 * 89.98073 * 5 4 3 25 25 H 1.09001 * 109.46722 * 209.97899 * 5 4 3 26 26 H 1.09004 * 109.46932 * 329.97719 * 5 4 3 27 27 H 1.08997 * 109.47504 * 210.00277 * 7 6 4 28 28 H 1.09000 * 109.47266 * 330.00453 * 7 6 4 29 29 H 1.08994 * 109.46872 * 300.00003 * 9 8 7 30 30 H 1.08994 * 109.46913 * 60.00440 * 9 8 7 31 31 H 1.09003 * 109.46523 * 299.99835 * 10 9 8 32 32 H 1.09004 * 109.47356 * 59.99678 * 10 9 8 33 33 H 1.08998 * 109.46798 * 300.00031 * 11 10 9 34 34 H 1.08999 * 109.46955 * 59.99531 * 11 10 9 35 35 H 0.97002 * 119.99829 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0012 6 6 3.9355 -0.4006 0.0004 7 6 5.3575 -0.8994 0.0015 8 16 5.9266 -1.1000 1.7121 9 6 7.6279 -1.6958 1.5090 10 6 8.2581 -1.9183 2.8854 11 6 9.6933 -2.4202 2.7140 12 6 10.3142 -2.6388 4.0696 13 1 9.7425 -2.4393 4.9640 14 6 11.6120 -3.0935 4.1682 15 7 12.1541 -3.2838 5.3512 16 14 12.6011 -3.4380 2.6214 17 1 13.3259 -2.2080 2.2130 18 1 13.5790 -4.5226 2.8905 19 1 11.6843 -3.8574 1.5310 20 16 2.4857 -1.4020 -0.0006 21 1 -0.3633 -0.0005 -1.0276 22 1 -0.3633 -0.8899 0.5142 23 1 -0.3633 0.8901 0.5135 24 1 4.7662 2.3008 1.0289 25 1 5.4436 1.7223 -0.5120 26 1 4.0909 2.8792 -0.5131 27 1 5.4063 -1.8592 -0.5126 28 1 5.9954 -0.1796 -0.5115 29 1 7.6202 -2.6357 0.9571 30 1 8.2087 -0.9558 0.9585 31 1 8.2657 -0.9786 3.4376 32 1 7.6771 -2.6585 3.4357 33 1 9.6860 -3.3598 2.1615 34 1 10.2739 -1.6797 2.1639 35 1 13.0674 -3.6033 5.4205 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359747317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:41 Heat of formation + Delta-G solvation = -3.537901 kcal Electronic energy + Delta-G solvation = -15328.175752 eV Core-core repulsion = 12770.535253 eV Total energy + Delta-G solvation = -2557.640499 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.97402 -36.40113 -34.95155 -34.16118 -31.50666 -30.05435 -29.90580 -26.35367 -24.93011 -23.68783 -22.00949 -19.97896 -18.95594 -18.94008 -17.24694 -16.53362 -16.34046 -16.19412 -15.91821 -15.09175 -14.90079 -14.65458 -14.43726 -14.13263 -14.05439 -13.79834 -13.63549 -13.30419 -13.02620 -12.89191 -12.85904 -12.67180 -12.18144 -11.84254 -11.67329 -11.57738 -11.37169 -10.99534 -10.77097 -10.66574 -10.21014 -9.54909 -8.71721 -8.29670 -6.35100 -0.53700 0.29065 0.69204 0.77673 1.37021 1.39440 1.51208 1.57485 1.83779 2.36584 3.05609 3.10215 3.63273 3.85319 4.01034 4.03814 4.04313 4.30884 4.43407 4.55172 4.55428 4.65176 4.74226 4.75972 4.76984 4.84208 4.95225 4.99554 5.09382 5.32640 5.43979 5.52372 5.64028 6.26815 6.70668 6.73010 7.29493 8.87472 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.045025 B = 0.003025 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.729508 B = 9253.432961 C = 9367.755071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.047 3.953 3 N -0.502 5.502 4 C 0.075 3.925 5 C -0.079 4.079 6 C -0.234 4.234 7 C 0.004 3.996 8 S -0.293 6.293 9 C -0.069 4.069 10 C -0.079 4.079 11 C -0.004 4.004 12 C -0.537 4.537 13 H 0.027 0.973 14 C 0.001 3.999 15 N -0.954 5.954 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.241 1.241 20 S 0.148 5.852 21 H 0.104 0.896 22 H 0.100 0.900 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.059 6.173 -18.187 29.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.231 4.231 3 N -0.218 5.218 4 C -0.060 4.060 5 C -0.138 4.138 6 C -0.356 4.356 7 C -0.145 4.145 8 S -0.063 6.063 9 C -0.217 4.217 10 C -0.118 4.118 11 C -0.043 4.043 12 C -0.575 4.575 13 H 0.045 0.955 14 C -0.196 4.196 15 N -0.594 5.594 16 Si 0.779 3.221 17 H -0.190 1.190 18 H -0.211 1.211 19 H -0.164 1.164 20 S 0.405 5.595 21 H 0.123 0.877 22 H 0.118 0.882 23 H 0.110 0.890 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.956 5.710 -17.168 29.229 hybrid contribution 1.986 0.234 -0.780 2.146 sum -20.971 5.943 -17.948 28.235 Atomic orbital electron populations 1.20656 0.82538 1.05346 1.05324 1.27682 1.03299 0.90873 1.01266 1.66248 1.04710 1.32689 1.18201 1.20516 0.90611 0.94688 1.00218 1.20445 0.95822 0.94104 1.03451 1.25006 0.98793 0.96174 1.15616 1.21577 0.92095 1.05489 0.95366 1.87393 1.17489 1.88216 1.13246 1.23422 0.92703 1.04233 1.01347 1.21037 0.95947 1.00552 0.94272 1.19499 0.93019 0.96645 0.95126 1.21492 0.98561 1.44309 0.93170 0.95489 1.26105 0.99018 0.94565 0.99899 1.70085 1.15385 1.48012 1.25942 0.85571 0.78435 0.78482 0.79620 1.18980 1.21129 1.16403 1.83893 0.96327 1.11384 1.67944 0.87728 0.88168 0.88972 0.90505 0.89402 0.90112 0.87813 0.86476 0.89091 0.88726 0.93096 0.93226 0.95525 0.95560 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.46 71.24 0.75 -0.07 16 2 C 0.05 0.88 7.39 88.52 0.65 1.54 16 3 N -0.50 -11.87 10.53 -179.39 -1.89 -13.75 16 4 C 0.07 1.72 6.74 41.52 0.28 2.00 16 5 C -0.08 -1.48 10.06 71.24 0.72 -0.77 16 6 C -0.23 -5.13 5.85 24.64 0.14 -4.98 16 7 C 0.00 0.08 6.16 71.23 0.44 0.52 16 8 S -0.29 -8.25 21.72 -56.49 -1.23 -9.48 16 9 C -0.07 -2.02 5.94 71.98 0.43 -1.60 16 10 C -0.08 -3.11 5.16 30.60 0.16 -2.95 16 11 C 0.00 -0.17 4.04 29.85 0.12 -0.05 16 12 C -0.54 -31.37 9.66 25.60 0.25 -31.13 16 13 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 14 C 0.00 0.04 5.47 84.65 0.46 0.50 16 15 N -0.95 -60.54 13.96 21.45 0.30 -60.25 16 16 Si 0.96 43.65 27.47 68.60 1.88 45.53 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 20 S 0.15 2.79 23.18 -56.49 -1.31 1.48 16 21 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 23 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 25 H 0.09 1.36 6.72 -2.39 -0.02 1.35 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.12 2.00 6.76 -2.39 -0.02 1.98 16 29 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 34 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 35 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -70.65 320.51 3.16 -67.49 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.01 Total: 5.97 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 4.40 Total: -36.99 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -1.59 Total: -74.00 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.53 kcal Atomic # 16 Polarization: -5.46 SS G_CDS: -2.54 Total: -8.00 kcal Total: -70.65 3.16 -67.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359747317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.948 kcal (2) G-P(sol) polarization free energy of solvation -70.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds