Wall clock time and date at job start Mon Mar 30 2020 00:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99970 * 2 1 4 4 C 1.39312 * 119.99864 * 179.97438 * 2 1 3 5 5 C 1.39082 * 119.62720 * 351.94493 * 4 2 1 6 6 C 1.38289 * 119.17109 * 180.02562 * 5 4 2 7 7 C 1.39407 * 118.44685 * 359.97438 * 6 5 4 8 8 N 1.40037 * 120.40967 * 180.02562 * 7 6 5 9 9 S 1.65603 * 120.00193 * 224.97832 * 8 7 6 10 10 O 1.42092 * 106.40466 * 178.53729 * 9 8 7 11 11 O 1.42105 * 106.40114 * 311.45967 * 9 8 7 12 12 C 1.76205 * 107.21888 * 64.99418 * 9 8 7 13 13 H 1.08004 * 119.99617 * 0.02562 * 12 9 8 14 14 C 1.37867 * 120.00159 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00217 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 120.00314 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47620 * 89.99501 * 16 14 12 18 18 H 1.48503 * 109.47597 * 210.00151 * 16 14 12 19 19 H 1.48500 * 109.46797 * 330.00016 * 16 14 12 20 20 C 1.38643 * 119.18266 * 359.97438 * 7 6 5 21 21 N 1.31985 * 120.75109 * 0.02562 * 20 7 6 22 22 H 1.08998 * 109.46951 * 174.55821 * 1 2 3 23 23 H 1.08997 * 109.47615 * 294.56186 * 1 2 3 24 24 H 1.09005 * 109.46999 * 54.56078 * 1 2 3 25 25 H 1.09002 * 109.46635 * 269.99952 * 3 2 1 26 26 H 1.09000 * 109.47087 * 29.99877 * 3 2 1 27 27 H 1.08999 * 109.47166 * 149.99529 * 3 2 1 28 28 H 1.07996 * 120.41283 * 0.04605 * 5 4 2 29 29 H 1.08002 * 120.77126 * 179.97438 * 6 5 4 30 30 H 0.97004 * 120.00475 * 44.97448 * 8 7 6 31 31 H 0.96996 * 120.00396 * 180.02562 * 15 14 12 32 32 H 1.07994 * 119.61770 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1615 -1.2065 0.0005 5 6 1.4686 -2.4004 0.1705 6 6 2.1695 -3.5925 0.1700 7 6 3.5522 -3.5498 -0.0025 8 7 4.3024 -4.7322 -0.0103 9 16 5.7168 -4.8212 0.8465 10 8 6.2129 -6.1404 0.6662 11 8 6.4619 -3.6581 0.5127 12 6 5.3030 -4.6741 2.5530 13 1 4.2717 -4.5526 2.8500 14 6 6.2956 -4.7140 3.5089 15 7 7.5515 -4.8614 3.1472 16 14 5.8570 -4.5588 5.3180 17 1 5.6021 -5.9082 5.8832 18 1 6.9824 -3.9211 6.0474 19 1 4.6375 -3.7237 5.4617 20 6 4.1753 -2.3223 -0.1674 21 7 3.4748 -1.2037 -0.1617 22 1 -0.3633 -1.0230 -0.0975 23 1 -0.3634 0.4271 0.9346 24 1 -0.3633 0.5959 -0.8373 25 1 2.3791 1.5833 -1.0277 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1385 0.5139 28 1 0.3965 -2.3965 0.3008 29 1 1.6576 -4.5345 0.3003 30 1 3.9936 -5.4993 -0.5175 31 1 8.2498 -4.8899 3.8197 32 1 5.2460 -2.2811 -0.3020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387148308.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:35 Heat of formation + Delta-G solvation = -35.350477 kcal Electronic energy + Delta-G solvation = -18797.870438 eV Core-core repulsion = 15692.557228 eV Total energy + Delta-G solvation = -3105.313210 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.98962 -36.73871 -35.31948 -34.16044 -34.07717 -33.09771 -31.76133 -28.53820 -28.16156 -26.15735 -24.55940 -23.01729 -21.15862 -19.12598 -17.79969 -17.35971 -16.78666 -16.36312 -15.81149 -15.17520 -14.98965 -14.37224 -14.15553 -13.94540 -13.63869 -13.10594 -12.96262 -12.52896 -12.49135 -12.06451 -12.01503 -11.82068 -11.30169 -11.22479 -10.99078 -10.61950 -10.43850 -10.32267 -10.15902 -9.37947 -9.26882 -9.26511 -8.94630 -8.68992 -7.05071 -6.71841 -5.34973 1.62616 1.73230 2.24825 3.06364 3.09516 3.13120 3.20348 4.04252 4.25263 4.58852 4.63354 4.79032 5.05669 5.26802 5.30770 5.36253 5.40238 5.47115 5.59687 5.69397 5.71627 5.94467 6.08191 6.12011 6.34986 6.45385 6.91525 6.94915 7.10372 7.30325 7.54993 7.81114 7.94822 8.52920 8.86517 10.21293 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.006183 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.306319 B = 4527.287890 C = 5061.475438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.626 5.626 3 C 0.106 3.894 4 C 0.373 3.627 5 C -0.226 4.226 6 C -0.059 4.059 7 C 0.070 3.930 8 N -1.068 6.068 9 S 2.707 3.293 10 O -0.998 6.998 11 O -0.996 6.996 12 C -1.014 5.014 13 H 0.103 0.897 14 C 0.134 3.866 15 N -0.844 5.844 16 Si 0.921 3.079 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.263 1.263 20 C 0.126 3.874 21 N -0.518 5.518 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.410 0.590 31 H 0.292 0.708 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.745 6.927 -4.430 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.344 5.344 3 C -0.038 4.038 4 C 0.140 3.860 5 C -0.251 4.251 6 C -0.088 4.088 7 C -0.031 4.031 8 N -0.814 5.814 9 S 2.808 3.192 10 O -0.988 6.988 11 O -0.986 6.986 12 C -1.148 5.148 13 H 0.121 0.879 14 C -0.084 4.084 15 N -0.474 5.474 16 Si 0.745 3.255 17 H -0.191 1.191 18 H -0.199 1.199 19 H -0.187 1.187 20 C -0.034 4.034 21 N -0.235 5.235 22 H 0.096 0.904 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.243 0.757 31 H 0.102 0.898 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.234 7.845 -4.822 15.312 hybrid contribution -1.289 -1.039 1.400 2.168 sum -13.523 6.806 -3.422 15.521 Atomic orbital electron populations 1.21653 0.79132 1.02950 1.00880 1.46066 1.04556 1.02965 1.80773 1.21443 0.97408 0.83967 1.00938 1.18391 0.88818 0.85658 0.93144 1.21248 1.00602 0.91460 1.11780 1.21340 0.93173 0.98251 0.96066 1.18221 0.91654 0.87519 1.05702 1.53885 1.44373 1.18161 1.64950 1.00821 0.69964 0.73005 0.75414 1.93390 1.77055 1.40260 1.88135 1.93301 1.68299 1.51250 1.85765 1.30420 1.02487 1.66254 1.15618 0.87915 1.24723 0.93329 0.88527 1.01827 1.69883 1.00366 1.39627 1.37498 0.86152 0.79233 0.79281 0.80873 1.19138 1.19873 1.18671 1.23579 1.01684 0.85501 0.92645 1.67254 1.05850 1.30915 1.19442 0.90443 0.92982 0.92701 0.93844 0.92442 0.90513 0.85134 0.84758 0.75703 0.89791 0.79336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.87 10.56 59.85 0.63 1.50 16 2 N -0.63 -8.26 3.40 -189.60 -0.64 -8.91 16 3 C 0.11 1.24 10.44 59.85 0.63 1.87 16 4 C 0.37 6.12 7.35 -154.80 -1.14 4.98 16 5 C -0.23 -3.30 9.27 -39.25 -0.36 -3.67 16 6 C -0.06 -0.93 10.10 -39.13 -0.40 -1.32 16 7 C 0.07 1.34 6.25 -83.52 -0.52 0.82 16 8 N -1.07 -21.32 5.80 32.53 0.19 -21.13 16 9 S 2.71 70.51 4.95 -107.50 -0.53 69.97 16 10 O -1.00 -28.58 18.02 -57.17 -1.03 -29.61 16 11 O -1.00 -27.87 14.98 -57.17 -0.86 -28.72 16 12 C -1.01 -27.87 9.68 30.60 0.30 -27.58 16 13 H 0.10 2.64 7.81 -52.48 -0.41 2.23 16 14 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 15 N -0.84 -24.59 13.19 55.43 0.73 -23.86 16 16 Si 0.92 20.75 29.54 -169.99 -5.02 15.73 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 19 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 20 C 0.13 2.59 10.35 -17.34 -0.18 2.41 16 21 N -0.52 -9.90 9.21 -12.23 -0.11 -10.02 16 22 H 0.08 0.63 5.41 -51.93 -0.28 0.35 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 27 H 0.08 1.05 7.51 -51.93 -0.39 0.66 16 28 H 0.13 1.45 5.88 -52.49 -0.31 1.14 16 29 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.41 6.77 8.96 -34.47 -0.31 6.46 16 31 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.19 4.21 5.60 -52.49 -0.29 3.92 16 LS Contribution 289.90 15.07 4.37 4.37 Total: -1.00 -34.98 289.90 -7.29 -42.27 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.24 Total: 7.25 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -1.14 Total: -17.34 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: 0.16 Total: -63.92 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -1.89 Total: -58.33 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 70.51 SS G_CDS: -0.53 Total: 69.97 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.98 -7.29 -42.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387148308.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.916 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds