Wall clock time and date at job start Mon Mar 30 2020 00:49:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.46503 * 119.99970 * 2 1
4 4 C 1.39312 * 119.99864 * 179.97438 * 2 1 3
5 5 C 1.39082 * 119.62720 * 351.94493 * 4 2 1
6 6 C 1.38289 * 119.17109 * 180.02562 * 5 4 2
7 7 C 1.39407 * 118.44685 * 359.97438 * 6 5 4
8 8 N 1.40037 * 120.40967 * 180.02562 * 7 6 5
9 9 S 1.65603 * 120.00193 * 224.97832 * 8 7 6
10 10 O 1.42092 * 106.40466 * 178.53729 * 9 8 7
11 11 O 1.42105 * 106.40114 * 311.45967 * 9 8 7
12 12 C 1.76205 * 107.21888 * 64.99418 * 9 8 7
13 13 H 1.08004 * 119.99617 * 0.02562 * 12 9 8
14 14 C 1.37867 * 120.00159 * 180.02562 * 12 9 8
15 15 N 1.31519 * 120.00217 * 0.02562 * 14 12 9
16 16 Si 1.86798 * 120.00314 * 180.02562 * 14 12 9
17 17 H 1.48502 * 109.47620 * 89.99501 * 16 14 12
18 18 H 1.48503 * 109.47597 * 210.00151 * 16 14 12
19 19 H 1.48500 * 109.46797 * 330.00016 * 16 14 12
20 20 C 1.38643 * 119.18266 * 359.97438 * 7 6 5
21 21 N 1.31985 * 120.75109 * 0.02562 * 20 7 6
22 22 H 1.08998 * 109.46951 * 174.55821 * 1 2 3
23 23 H 1.08997 * 109.47615 * 294.56186 * 1 2 3
24 24 H 1.09005 * 109.46999 * 54.56078 * 1 2 3
25 25 H 1.09002 * 109.46635 * 269.99952 * 3 2 1
26 26 H 1.09000 * 109.47087 * 29.99877 * 3 2 1
27 27 H 1.08999 * 109.47166 * 149.99529 * 3 2 1
28 28 H 1.07996 * 120.41283 * 0.04605 * 5 4 2
29 29 H 1.08002 * 120.77126 * 179.97438 * 6 5 4
30 30 H 0.97004 * 120.00475 * 44.97448 * 8 7 6
31 31 H 0.96996 * 120.00396 * 180.02562 * 15 14 12
32 32 H 1.07994 * 119.61770 * 180.02562 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.1615 -1.2065 0.0005
5 6 1.4686 -2.4004 0.1705
6 6 2.1695 -3.5925 0.1700
7 6 3.5522 -3.5498 -0.0025
8 7 4.3024 -4.7322 -0.0103
9 16 5.7168 -4.8212 0.8465
10 8 6.2129 -6.1404 0.6662
11 8 6.4619 -3.6581 0.5127
12 6 5.3030 -4.6741 2.5530
13 1 4.2717 -4.5526 2.8500
14 6 6.2956 -4.7140 3.5089
15 7 7.5515 -4.8614 3.1472
16 14 5.8570 -4.5588 5.3180
17 1 5.6021 -5.9082 5.8832
18 1 6.9824 -3.9211 6.0474
19 1 4.6375 -3.7237 5.4617
20 6 4.1753 -2.3223 -0.1674
21 7 3.4748 -1.2037 -0.1617
22 1 -0.3633 -1.0230 -0.0975
23 1 -0.3634 0.4271 0.9346
24 1 -0.3633 0.5959 -0.8373
25 1 2.3791 1.5833 -1.0277
26 1 1.6084 2.0284 0.5138
27 1 3.1499 1.1385 0.5139
28 1 0.3965 -2.3965 0.3008
29 1 1.6576 -4.5345 0.3003
30 1 3.9936 -5.4993 -0.5175
31 1 8.2498 -4.8899 3.8197
32 1 5.2460 -2.2811 -0.3020
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000387148308.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:49:35
Heat of formation + Delta-G solvation = -35.350477 kcal
Electronic energy + Delta-G solvation = -18797.870438 eV
Core-core repulsion = 15692.557228 eV
Total energy + Delta-G solvation = -3105.313210 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.078 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-39.98962 -36.73871 -35.31948 -34.16044 -34.07717 -33.09771 -31.76133 -28.53820
-28.16156 -26.15735 -24.55940 -23.01729 -21.15862 -19.12598 -17.79969 -17.35971
-16.78666 -16.36312 -15.81149 -15.17520 -14.98965 -14.37224 -14.15553 -13.94540
-13.63869 -13.10594 -12.96262 -12.52896 -12.49135 -12.06451 -12.01503 -11.82068
-11.30169 -11.22479 -10.99078 -10.61950 -10.43850 -10.32267 -10.15902 -9.37947
-9.26882 -9.26511 -8.94630 -8.68992 -7.05071 -6.71841 -5.34973 1.62616
1.73230 2.24825 3.06364 3.09516 3.13120 3.20348 4.04252 4.25263
4.58852 4.63354 4.79032 5.05669 5.26802 5.30770 5.36253 5.40238
5.47115 5.59687 5.69397 5.71627 5.94467 6.08191 6.12011 6.34986
6.45385 6.91525 6.94915 7.10372 7.30325 7.54993 7.81114 7.94822
8.52920 8.86517 10.21293
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.022037 B = 0.006183 C = 0.005531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1270.306319 B = 4527.287890 C = 5061.475438
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.097 3.903
2 N -0.626 5.626
3 C 0.106 3.894
4 C 0.373 3.627
5 C -0.226 4.226
6 C -0.059 4.059
7 C 0.070 3.930
8 N -1.068 6.068
9 S 2.707 3.293
10 O -0.998 6.998
11 O -0.996 6.996
12 C -1.014 5.014
13 H 0.103 0.897
14 C 0.134 3.866
15 N -0.844 5.844
16 Si 0.921 3.079
17 H -0.266 1.266
18 H -0.274 1.274
19 H -0.263 1.263
20 C 0.126 3.874
21 N -0.518 5.518
22 H 0.077 0.923
23 H 0.052 0.948
24 H 0.054 0.946
25 H 0.043 0.957
26 H 0.057 0.943
27 H 0.076 0.924
28 H 0.131 0.869
29 H 0.135 0.865
30 H 0.410 0.590
31 H 0.292 0.708
32 H 0.190 0.810
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.745 6.927 -4.430 16.016
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 N -0.344 5.344
3 C -0.038 4.038
4 C 0.140 3.860
5 C -0.251 4.251
6 C -0.088 4.088
7 C -0.031 4.031
8 N -0.814 5.814
9 S 2.808 3.192
10 O -0.988 6.988
11 O -0.986 6.986
12 C -1.148 5.148
13 H 0.121 0.879
14 C -0.084 4.084
15 N -0.474 5.474
16 Si 0.745 3.255
17 H -0.191 1.191
18 H -0.199 1.199
19 H -0.187 1.187
20 C -0.034 4.034
21 N -0.235 5.235
22 H 0.096 0.904
23 H 0.070 0.930
24 H 0.073 0.927
25 H 0.062 0.938
26 H 0.076 0.924
27 H 0.095 0.905
28 H 0.149 0.851
29 H 0.152 0.848
30 H 0.243 0.757
31 H 0.102 0.898
32 H 0.207 0.793
Dipole moment (debyes) X Y Z Total
from point charges -12.234 7.845 -4.822 15.312
hybrid contribution -1.289 -1.039 1.400 2.168
sum -13.523 6.806 -3.422 15.521
Atomic orbital electron populations
1.21653 0.79132 1.02950 1.00880 1.46066 1.04556 1.02965 1.80773
1.21443 0.97408 0.83967 1.00938 1.18391 0.88818 0.85658 0.93144
1.21248 1.00602 0.91460 1.11780 1.21340 0.93173 0.98251 0.96066
1.18221 0.91654 0.87519 1.05702 1.53885 1.44373 1.18161 1.64950
1.00821 0.69964 0.73005 0.75414 1.93390 1.77055 1.40260 1.88135
1.93301 1.68299 1.51250 1.85765 1.30420 1.02487 1.66254 1.15618
0.87915 1.24723 0.93329 0.88527 1.01827 1.69883 1.00366 1.39627
1.37498 0.86152 0.79233 0.79281 0.80873 1.19138 1.19873 1.18671
1.23579 1.01684 0.85501 0.92645 1.67254 1.05850 1.30915 1.19442
0.90443 0.92982 0.92701 0.93844 0.92442 0.90513 0.85134 0.84758
0.75703 0.89791 0.79336
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 48.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.87 10.56 59.85 0.63 1.50 16
2 N -0.63 -8.26 3.40 -189.60 -0.64 -8.91 16
3 C 0.11 1.24 10.44 59.85 0.63 1.87 16
4 C 0.37 6.12 7.35 -154.80 -1.14 4.98 16
5 C -0.23 -3.30 9.27 -39.25 -0.36 -3.67 16
6 C -0.06 -0.93 10.10 -39.13 -0.40 -1.32 16
7 C 0.07 1.34 6.25 -83.52 -0.52 0.82 16
8 N -1.07 -21.32 5.80 32.53 0.19 -21.13 16
9 S 2.71 70.51 4.95 -107.50 -0.53 69.97 16
10 O -1.00 -28.58 18.02 -57.17 -1.03 -29.61 16
11 O -1.00 -27.87 14.98 -57.17 -0.86 -28.72 16
12 C -1.01 -27.87 9.68 30.60 0.30 -27.58 16
13 H 0.10 2.64 7.81 -52.48 -0.41 2.23 16
14 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16
15 N -0.84 -24.59 13.19 55.43 0.73 -23.86 16
16 Si 0.92 20.75 29.54 -169.99 -5.02 15.73 16
17 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16
18 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16
19 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16
20 C 0.13 2.59 10.35 -17.34 -0.18 2.41 16
21 N -0.52 -9.90 9.21 -12.23 -0.11 -10.02 16
22 H 0.08 0.63 5.41 -51.93 -0.28 0.35 16
23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16
24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16
25 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16
26 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16
27 H 0.08 1.05 7.51 -51.93 -0.39 0.66 16
28 H 0.13 1.45 5.88 -52.49 -0.31 1.14 16
29 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16
30 H 0.41 6.77 8.96 -34.47 -0.31 6.46 16
31 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16
32 H 0.19 4.21 5.60 -52.49 -0.29 3.92 16
LS Contribution 289.90 15.07 4.37 4.37
Total: -1.00 -34.98 289.90 -7.29 -42.27
By element:
Atomic # 1 Polarization: 10.49 SS G_CDS: -3.24 Total: 7.25 kcal
Atomic # 6 Polarization: -16.20 SS G_CDS: -1.14 Total: -17.34 kcal
Atomic # 7 Polarization: -64.08 SS G_CDS: 0.16 Total: -63.92 kcal
Atomic # 8 Polarization: -56.44 SS G_CDS: -1.89 Total: -58.33 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal
Atomic # 16 Polarization: 70.51 SS G_CDS: -0.53 Total: 69.97 kcal
Total LS contribution 4.37 Total: 4.37 kcal
Total: -34.98 -7.29 -42.27 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000387148308.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.916 kcal
(2) G-P(sol) polarization free energy of solvation -34.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.063 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.350 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds