Wall clock time and date at job start Mon Mar 30 2020 00:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99970 * 2 1 4 4 C 1.39312 * 119.99864 * 179.97438 * 2 1 3 5 5 C 1.39082 * 119.62720 * 351.94493 * 4 2 1 6 6 C 1.38289 * 119.17109 * 180.02562 * 5 4 2 7 7 C 1.39407 * 118.44685 * 359.97438 * 6 5 4 8 8 N 1.40037 * 120.40967 * 180.02562 * 7 6 5 9 9 S 1.65603 * 120.00193 * 224.97832 * 8 7 6 10 10 O 1.42092 * 106.40466 * 178.53729 * 9 8 7 11 11 O 1.42105 * 106.40114 * 311.45967 * 9 8 7 12 12 C 1.76205 * 107.21888 * 64.99418 * 9 8 7 13 13 H 1.08004 * 119.99617 * 0.02562 * 12 9 8 14 14 C 1.37867 * 120.00159 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00217 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 120.00314 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47620 * 89.99501 * 16 14 12 18 18 H 1.48503 * 109.47597 * 210.00151 * 16 14 12 19 19 H 1.48500 * 109.46797 * 330.00016 * 16 14 12 20 20 C 1.38643 * 119.18266 * 359.97438 * 7 6 5 21 21 N 1.31985 * 120.75109 * 0.02562 * 20 7 6 22 22 H 1.08998 * 109.46951 * 174.55821 * 1 2 3 23 23 H 1.08997 * 109.47615 * 294.56186 * 1 2 3 24 24 H 1.09005 * 109.46999 * 54.56078 * 1 2 3 25 25 H 1.09002 * 109.46635 * 269.99952 * 3 2 1 26 26 H 1.09000 * 109.47087 * 29.99877 * 3 2 1 27 27 H 1.08999 * 109.47166 * 149.99529 * 3 2 1 28 28 H 1.07996 * 120.41283 * 0.04605 * 5 4 2 29 29 H 1.08002 * 120.77126 * 179.97438 * 6 5 4 30 30 H 0.97004 * 120.00475 * 44.97448 * 8 7 6 31 31 H 0.96996 * 120.00396 * 180.02562 * 15 14 12 32 32 H 1.07994 * 119.61770 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1615 -1.2065 0.0005 5 6 1.4686 -2.4004 0.1705 6 6 2.1695 -3.5925 0.1700 7 6 3.5522 -3.5498 -0.0025 8 7 4.3024 -4.7322 -0.0103 9 16 5.7168 -4.8212 0.8465 10 8 6.2129 -6.1404 0.6662 11 8 6.4619 -3.6581 0.5127 12 6 5.3030 -4.6741 2.5530 13 1 4.2717 -4.5526 2.8500 14 6 6.2956 -4.7140 3.5089 15 7 7.5515 -4.8614 3.1472 16 14 5.8570 -4.5588 5.3180 17 1 5.6021 -5.9082 5.8832 18 1 6.9824 -3.9211 6.0474 19 1 4.6375 -3.7237 5.4617 20 6 4.1753 -2.3223 -0.1674 21 7 3.4748 -1.2037 -0.1617 22 1 -0.3633 -1.0230 -0.0975 23 1 -0.3634 0.4271 0.9346 24 1 -0.3633 0.5959 -0.8373 25 1 2.3791 1.5833 -1.0277 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1385 0.5139 28 1 0.3965 -2.3965 0.3008 29 1 1.6576 -4.5345 0.3003 30 1 3.9936 -5.4993 -0.5175 31 1 8.2498 -4.8899 3.8197 32 1 5.2460 -2.2811 -0.3020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387148308.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:35 Heat of formation + Delta-G solvation = -62.922721 kcal Electronic energy + Delta-G solvation = -18799.066061 eV Core-core repulsion = 15692.557228 eV Total energy + Delta-G solvation = -3106.508832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.28514 -37.98198 -37.38175 -36.23336 -35.59289 -35.14767 -33.04203 -29.86444 -29.01797 -28.28091 -25.69664 -24.33083 -22.37448 -21.11847 -19.60842 -18.77881 -18.31575 -18.02366 -17.25305 -16.96936 -16.14363 -15.96261 -15.72565 -15.53458 -15.10280 -14.36659 -14.18150 -14.02850 -13.94263 -13.36290 -13.28878 -13.03127 -12.92370 -12.85373 -12.59948 -12.55024 -12.34326 -12.32991 -11.91836 -11.26241 -11.01665 -10.64553 -10.47395 -10.11477 -8.79640 -8.25076 -7.50206 0.08057 0.34562 0.58605 1.31790 1.32701 1.48405 2.09016 2.18669 2.55964 2.81757 2.94083 3.55416 3.72852 4.02025 4.04113 4.22751 4.27274 4.49038 4.53891 4.60811 4.69436 4.85852 4.86170 4.96444 5.02475 5.13177 5.23968 5.45139 5.57864 5.87350 6.08539 6.30501 6.44841 6.76037 7.22986 8.18810 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.006183 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.306319 B = 4527.287890 C = 5061.475438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.626 5.626 3 C 0.102 3.898 4 C 0.364 3.636 5 C -0.211 4.211 6 C -0.048 4.048 7 C 0.041 3.959 8 N -1.051 6.051 9 S 2.715 3.285 10 O -1.034 7.034 11 O -1.028 7.028 12 C -1.034 5.034 13 H 0.116 0.884 14 C 0.073 3.927 15 N -0.890 5.890 16 Si 0.987 3.013 17 H -0.250 1.250 18 H -0.262 1.262 19 H -0.253 1.253 20 C 0.099 3.901 21 N -0.545 5.545 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.177 0.823 29 H 0.170 0.830 30 H 0.425 0.575 31 H 0.300 0.700 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.506 7.582 -3.286 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.342 5.342 3 C -0.041 4.041 4 C 0.129 3.871 5 C -0.236 4.236 6 C -0.077 4.077 7 C -0.059 4.059 8 N -0.802 5.802 9 S 2.817 3.183 10 O -1.024 7.024 11 O -1.017 7.017 12 C -1.168 5.168 13 H 0.134 0.866 14 C -0.141 4.141 15 N -0.522 5.522 16 Si 0.806 3.194 17 H -0.174 1.174 18 H -0.186 1.186 19 H -0.176 1.176 20 C -0.061 4.061 21 N -0.263 5.263 22 H 0.108 0.892 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.068 0.932 28 H 0.194 0.806 29 H 0.188 0.812 30 H 0.262 0.738 31 H 0.110 0.890 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.018 8.507 -3.707 18.512 hybrid contribution -0.285 -1.080 0.939 1.459 sum -16.303 7.428 -2.767 18.127 Atomic orbital electron populations 1.21976 0.76209 1.04396 1.02686 1.46470 1.06309 1.02133 1.79336 1.21519 0.96925 0.84369 1.01290 1.18896 0.88230 0.87794 0.92213 1.21712 1.02622 0.90009 1.09251 1.21708 0.91411 1.00388 0.94194 1.18339 0.93146 0.86181 1.08276 1.53078 1.43226 1.19401 1.64489 1.00240 0.70823 0.71735 0.75501 1.93329 1.78783 1.41670 1.88616 1.93273 1.70281 1.52035 1.86124 1.30771 1.03292 1.66108 1.16596 0.86617 1.25956 0.93062 0.87706 1.07350 1.69971 1.01728 1.40919 1.39547 0.85169 0.79581 0.80249 0.74451 1.17389 1.18577 1.17647 1.23161 1.00797 0.87017 0.95088 1.67158 1.07689 1.30483 1.20982 0.89205 0.91210 0.90751 0.93490 0.89163 0.93227 0.80617 0.81249 0.73787 0.88997 0.82654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 10.56 127.77 1.35 2.52 16 2 N -0.63 -14.67 3.40 -753.76 -2.56 -17.23 16 3 C 0.10 2.22 10.44 127.77 1.33 3.55 16 4 C 0.36 11.22 7.35 132.97 0.98 12.20 16 5 C -0.21 -5.38 9.27 22.48 0.21 -5.17 16 6 C -0.05 -1.38 10.10 22.56 0.23 -1.15 16 7 C 0.04 1.57 6.25 38.21 0.24 1.81 16 8 N -1.05 -42.51 5.80 -51.00 -0.30 -42.80 16 9 S 2.71 146.48 4.95 -56.49 -0.28 146.20 16 10 O -1.03 -61.31 18.02 -128.00 -2.31 -63.61 16 11 O -1.03 -60.82 14.98 -128.00 -1.92 -62.73 16 12 C -1.03 -57.51 9.68 67.73 0.66 -56.85 16 13 H 0.12 5.90 7.81 -2.91 -0.02 5.88 16 14 C 0.07 4.07 5.46 84.65 0.46 4.53 16 15 N -0.89 -53.19 13.19 21.44 0.28 -52.91 16 16 Si 0.99 41.81 29.54 68.60 2.03 43.83 16 17 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 18 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 19 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 20 C 0.10 4.22 10.35 84.77 0.88 5.10 16 21 N -0.55 -21.13 9.21 -192.62 -1.77 -22.90 16 22 H 0.09 0.95 5.41 -2.39 -0.01 0.94 16 23 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 1.36 8.07 -2.39 -0.02 1.34 16 27 H 0.05 1.35 7.51 -2.39 -0.02 1.34 16 28 H 0.18 2.83 5.88 -2.91 -0.02 2.82 16 29 H 0.17 3.62 8.06 -2.91 -0.02 3.59 16 30 H 0.43 14.02 8.96 -96.74 -0.87 13.15 16 31 H 0.30 16.07 8.31 -92.71 -0.77 15.30 16 32 H 0.16 7.56 5.60 -2.91 -0.02 7.54 16 Total: -1.00 -79.49 289.90 -0.20 -79.69 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.30 Total: 25.93 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 6.33 Total: -33.46 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -4.35 Total: -135.84 kcal Atomic # 8 Polarization: -122.12 SS G_CDS: -4.22 Total: -126.35 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 146.48 SS G_CDS: -0.28 Total: 146.20 kcal Total: -79.49 -0.20 -79.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387148308.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.763 kcal (2) G-P(sol) polarization free energy of solvation -79.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds