Wall clock time and date at job start Mon Mar 30 2020 01:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 N 1.29031 * 124.91736 * 89.99650 * 5 4 3 7 7 C 1.31780 * 117.12711 * 179.97438 * 6 5 4 8 8 C 1.50702 * 122.74877 * 180.02562 * 7 6 5 9 9 S 1.81394 * 109.47138 * 89.99983 * 8 7 6 10 10 C 1.81405 * 102.99825 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46775 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00219 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99597 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00034 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99661 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47303 * 90.00363 * 15 13 11 17 17 H 1.48504 * 109.46746 * 210.00050 * 15 13 11 18 18 H 1.48503 * 109.47261 * 329.99898 * 15 13 11 19 19 C 1.33637 * 114.50002 * 0.02562 * 7 6 5 20 20 S 1.70980 * 124.91855 * 269.69899 * 5 4 3 21 21 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 22 22 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 24 24 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 25 25 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 26 26 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 27 27 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 29 29 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 30 30 H 1.08997 * 109.46852 * 210.00565 * 8 7 6 31 31 H 1.08995 * 109.46759 * 329.99855 * 8 7 6 32 32 H 1.09000 * 109.47150 * 300.00351 * 10 9 8 33 33 H 1.08995 * 109.46787 * 60.00496 * 10 9 8 34 34 H 0.97000 * 119.99702 * 179.97438 * 14 13 11 35 35 H 1.07997 * 126.03814 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0723 2.8633 0.0000 6 7 4.3189 3.5590 1.0583 7 6 4.7546 4.7899 0.8803 8 6 5.0821 5.7125 2.0260 9 16 6.8257 5.5119 2.4844 10 6 7.0248 6.6842 3.8543 11 6 8.4457 6.6360 4.3541 12 1 9.1576 5.9668 3.8939 13 6 8.8366 7.4456 5.3995 14 7 7.9693 8.2594 5.9609 15 14 10.5977 7.3853 6.0195 16 1 11.4190 8.3729 5.2742 17 1 10.6240 7.7122 7.4678 18 1 11.1502 6.0230 5.8094 19 6 4.8821 5.1530 -0.3995 20 16 4.4049 3.7844 -1.4016 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6765 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.9337 0.9286 0.8891 29 1 3.9330 0.9289 -0.8908 30 1 4.9020 6.7444 1.7244 31 1 4.4513 5.4685 2.8806 32 1 6.7963 7.6917 3.5066 33 1 6.3455 6.4163 4.6634 34 1 8.2443 8.8287 6.6966 35 1 5.2224 6.1137 -0.7565 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:32 Heat of formation + Delta-G solvation = 9.070145 kcal Electronic energy + Delta-G solvation = -15250.104634 eV Core-core repulsion = 12693.010861 eV Total energy + Delta-G solvation = -2557.093773 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.82019 -36.18094 -33.13473 -32.64216 -30.02291 -28.53754 -27.49496 -25.47307 -23.13925 -22.15496 -21.30058 -19.69377 -17.64018 -16.47495 -15.76922 -15.57005 -15.20282 -14.92892 -14.41899 -13.90509 -13.81088 -13.58205 -13.15292 -12.88376 -12.59571 -12.38601 -12.32711 -11.96357 -11.53203 -11.51299 -11.34585 -11.25955 -10.86427 -10.84365 -10.69969 -10.12267 -9.60444 -9.53921 -9.33922 -8.88964 -8.60366 -8.49450 -6.66166 -6.18342 -4.22349 0.74291 1.39524 1.75299 2.30983 3.27145 3.29628 3.33009 3.39782 3.85810 3.99934 4.36786 4.59978 4.67938 4.74055 5.02063 5.07923 5.18800 5.23793 5.35253 5.36147 5.41988 5.53331 5.59542 5.70466 5.76815 5.85090 5.92342 6.00950 6.06216 6.25160 7.10380 7.12875 7.76263 7.85268 8.02330 8.79362 9.40447 10.93028 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.003155 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.035263 B = 8872.190817 C = 9253.707192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.114 4.114 4 C -0.042 4.042 5 C 0.053 3.947 6 N -0.456 5.456 7 C 0.100 3.900 8 C -0.022 4.022 9 S -0.288 6.288 10 C 0.089 3.911 11 C -0.511 4.511 12 H 0.067 0.933 13 C 0.065 3.935 14 N -0.893 5.893 15 Si 0.907 3.093 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.243 4.243 20 S 0.099 5.901 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.080 -12.134 -15.068 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.153 4.153 4 C -0.083 4.083 5 C -0.226 4.226 6 N -0.170 5.170 7 C -0.032 4.032 8 C -0.172 4.172 9 S -0.061 6.061 10 C -0.058 4.058 11 C -0.550 4.550 12 H 0.085 0.915 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.734 3.266 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.384 4.384 20 S 0.353 5.647 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -12.489 -13.085 -15.912 24.091 hybrid contribution 0.260 1.607 1.660 2.325 sum -12.229 -11.478 -14.251 22.009 Atomic orbital electron populations 1.21770 0.95737 1.01601 1.01944 1.21520 0.96014 0.96295 1.02299 1.21625 0.93276 0.97416 1.02951 1.20290 0.96087 0.87641 1.04313 1.26974 1.03267 1.01696 0.90708 1.66030 1.14061 1.05524 1.31420 1.19572 0.99377 0.90911 0.93347 1.21699 0.99690 0.98657 0.97149 1.86837 1.08310 1.61456 1.49450 1.21087 1.01205 0.93003 0.90498 1.20667 0.93909 1.23502 1.16953 0.91493 1.24966 0.98254 0.94805 0.95858 1.69956 1.34570 1.24345 1.24277 0.86345 0.83669 0.78717 0.77896 1.20344 1.20954 1.19539 1.26759 1.11850 1.04350 0.95486 1.83753 1.61420 1.06174 1.13336 0.92767 0.92731 0.92623 0.91868 0.91618 0.91736 0.91114 0.88653 0.89748 0.89248 0.89088 0.94554 0.94495 0.92500 0.80401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.84 5.93 -26.73 -0.16 -1.00 16 3 C -0.11 -0.95 5.20 -26.73 -0.14 -1.09 16 4 C -0.04 -0.41 5.80 -27.89 -0.16 -0.57 16 5 C 0.05 0.69 6.64 -13.46 -0.09 0.60 16 6 N -0.46 -7.55 10.53 -8.06 -0.08 -7.64 16 7 C 0.10 1.67 6.00 -84.23 -0.51 1.16 16 8 C -0.02 -0.40 6.36 36.01 0.23 -0.17 16 9 S -0.29 -6.58 21.64 -107.50 -2.33 -8.90 16 10 C 0.09 2.36 5.70 36.01 0.21 2.57 16 11 C -0.51 -14.69 9.13 -34.44 -0.31 -15.00 16 12 H 0.07 1.93 7.71 -52.49 -0.40 1.53 16 13 C 0.06 1.84 5.46 -17.82 -0.10 1.75 16 14 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 15 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C -0.24 -3.44 11.13 29.12 0.32 -3.11 16 20 S 0.10 1.15 23.18 -107.50 -2.49 -1.35 16 21 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.49 8.12 -51.93 -0.42 1.07 16 31 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 33 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -31.03 326.66 -10.06 -41.09 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -5.46 Total: -3.75 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.34 Total: -15.48 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.65 Total: -33.16 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -5.43 SS G_CDS: -4.82 Total: -10.25 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.03 -10.06 -41.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.158 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds