Wall clock time and date at job start Mon Mar 30 2020 01:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 N 1.29031 * 124.91736 * 89.99650 * 5 4 3 7 7 C 1.31780 * 117.12711 * 179.97438 * 6 5 4 8 8 C 1.50702 * 122.74877 * 180.02562 * 7 6 5 9 9 S 1.81394 * 109.47138 * 89.99983 * 8 7 6 10 10 C 1.81405 * 102.99825 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46775 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00219 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99597 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00034 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99661 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47303 * 90.00363 * 15 13 11 17 17 H 1.48504 * 109.46746 * 210.00050 * 15 13 11 18 18 H 1.48503 * 109.47261 * 329.99898 * 15 13 11 19 19 C 1.33637 * 114.50002 * 0.02562 * 7 6 5 20 20 S 1.70980 * 124.91855 * 269.69899 * 5 4 3 21 21 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 22 22 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 24 24 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 25 25 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 26 26 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 27 27 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 29 29 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 30 30 H 1.08997 * 109.46852 * 210.00565 * 8 7 6 31 31 H 1.08995 * 109.46759 * 329.99855 * 8 7 6 32 32 H 1.09000 * 109.47150 * 300.00351 * 10 9 8 33 33 H 1.08995 * 109.46787 * 60.00496 * 10 9 8 34 34 H 0.97000 * 119.99702 * 179.97438 * 14 13 11 35 35 H 1.07997 * 126.03814 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0723 2.8633 0.0000 6 7 4.3189 3.5590 1.0583 7 6 4.7546 4.7899 0.8803 8 6 5.0821 5.7125 2.0260 9 16 6.8257 5.5119 2.4844 10 6 7.0248 6.6842 3.8543 11 6 8.4457 6.6360 4.3541 12 1 9.1576 5.9668 3.8939 13 6 8.8366 7.4456 5.3995 14 7 7.9693 8.2594 5.9609 15 14 10.5977 7.3853 6.0195 16 1 11.4190 8.3729 5.2742 17 1 10.6240 7.7122 7.4678 18 1 11.1502 6.0230 5.8094 19 6 4.8821 5.1530 -0.3995 20 16 4.4049 3.7844 -1.4016 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6765 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.9337 0.9286 0.8891 29 1 3.9330 0.9289 -0.8908 30 1 4.9020 6.7444 1.7244 31 1 4.4513 5.4685 2.8806 32 1 6.7963 7.6917 3.5066 33 1 6.3455 6.4163 4.6634 34 1 8.2443 8.8287 6.6966 35 1 5.2224 6.1137 -0.7565 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:32 Heat of formation + Delta-G solvation = -7.824973 kcal Electronic energy + Delta-G solvation = -15250.837261 eV Core-core repulsion = 12693.010861 eV Total energy + Delta-G solvation = -2557.826400 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.93712 -36.86990 -35.31634 -33.60480 -31.00819 -30.66660 -28.74386 -26.29932 -25.22364 -23.11871 -21.94324 -20.77887 -18.92419 -18.47024 -17.25974 -16.58211 -16.46571 -16.26435 -15.78866 -14.97689 -14.86801 -14.70078 -14.53788 -14.40042 -14.10088 -13.83657 -13.65028 -13.13013 -12.77745 -12.70402 -12.41542 -12.26651 -12.16990 -12.02537 -11.84764 -11.59211 -11.43699 -10.81239 -10.76552 -10.60296 -10.38406 -9.63580 -8.52536 -8.35243 -6.48898 -0.34068 0.38891 0.66419 0.79819 1.38702 1.40410 1.52589 1.89540 2.08033 2.35682 2.98875 2.99085 3.72103 3.94178 4.03628 4.04877 4.20088 4.39505 4.40714 4.44384 4.63980 4.71253 4.75836 4.91227 4.91567 4.93330 5.00142 5.09279 5.14063 5.29362 5.40412 5.49864 5.54578 5.85806 6.58000 6.77546 7.19036 8.76841 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.003155 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.035263 B = 8872.190817 C = 9253.707192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.108 4.108 4 C -0.043 4.043 5 C 0.043 3.957 6 N -0.498 5.498 7 C 0.069 3.931 8 C -0.006 4.006 9 S -0.301 6.301 10 C 0.093 3.907 11 C -0.537 4.537 12 H 0.061 0.939 13 C 0.015 3.985 14 N -0.925 5.925 15 Si 0.978 3.022 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.267 1.267 19 C -0.249 4.249 20 S 0.178 5.822 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.020 0.980 33 H 0.013 0.987 34 H 0.271 0.729 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.930 -13.215 -17.003 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.147 4.147 4 C -0.084 4.084 5 C -0.236 4.236 6 N -0.213 5.213 7 C -0.063 4.063 8 C -0.156 4.156 9 S -0.073 6.073 10 C -0.054 4.054 11 C -0.576 4.576 12 H 0.079 0.921 13 C -0.186 4.186 14 N -0.564 5.564 15 Si 0.801 3.199 16 H -0.191 1.191 17 H -0.199 1.199 18 H -0.191 1.191 19 C -0.391 4.391 20 S 0.434 5.566 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -12.347 -14.175 -17.861 25.930 hybrid contribution 0.079 1.879 2.108 2.825 sum -12.268 -12.296 -15.753 23.449 Atomic orbital electron populations 1.21781 0.95497 1.02119 1.01767 1.21506 0.96192 0.95188 1.02931 1.21576 0.92353 0.98433 1.02327 1.20480 0.96785 0.85826 1.05311 1.27570 1.02119 1.02836 0.91033 1.65999 1.15871 1.05920 1.33557 1.19342 1.02072 0.91392 0.93444 1.21646 0.95609 1.00393 0.97992 1.86637 1.13032 1.60103 1.47507 1.20766 1.00025 0.93233 0.91380 1.20965 0.94781 1.24005 1.17845 0.92128 1.25932 1.02935 0.94028 0.95726 1.70058 1.36766 1.24835 1.24694 0.85253 0.77981 0.78996 0.77674 1.19148 1.19888 1.19121 1.27101 1.10298 1.06179 0.95509 1.83455 1.59255 1.03295 1.10624 0.92315 0.91886 0.93473 0.90331 0.91894 0.90955 0.93148 0.89371 0.87009 0.87725 0.89952 0.96184 0.96885 0.91981 0.78865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.02 16 2 C -0.12 -1.41 5.93 30.59 0.18 -1.22 16 3 C -0.11 -1.63 5.20 30.59 0.16 -1.47 16 4 C -0.04 -0.75 5.80 29.85 0.17 -0.57 16 5 C 0.04 1.05 6.64 88.52 0.59 1.64 16 6 N -0.50 -16.33 10.53 -179.40 -1.89 -18.22 16 7 C 0.07 2.29 6.00 41.52 0.25 2.54 16 8 C -0.01 -0.23 6.36 71.24 0.45 0.22 16 9 S -0.30 -14.06 21.64 -56.49 -1.22 -15.28 16 10 C 0.09 5.16 5.70 71.24 0.41 5.57 16 11 C -0.54 -31.65 9.13 25.60 0.23 -31.42 16 12 H 0.06 3.57 7.71 -2.91 -0.02 3.54 16 13 C 0.01 0.84 5.46 84.66 0.46 1.30 16 14 N -0.92 -55.28 13.29 21.45 0.28 -55.00 16 15 Si 0.98 44.46 29.54 68.60 2.03 46.49 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 C -0.25 -6.60 11.13 66.78 0.74 -5.86 16 20 S 0.18 3.61 23.18 -56.49 -1.31 2.30 16 21 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 22 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 3.52 8.12 -2.39 -0.02 3.50 16 31 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.19 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -67.88 326.66 3.30 -64.58 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.05 Total: 5.42 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 4.36 Total: -30.29 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -1.60 Total: -73.22 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -2.53 Total: -12.98 kcal Total: -67.88 3.30 -64.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.753 kcal (2) G-P(sol) polarization free energy of solvation -67.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds