Wall clock time and date at job start Mon Mar 30 2020 01:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31592 * 1 3 3 Si 1.86801 * 120.00234 * 2 1 4 4 H 1.48507 * 109.46963 * 240.00220 * 3 2 1 5 5 H 1.48504 * 109.47078 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47134 * 119.99917 * 3 2 1 7 7 C 1.38798 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00313 * 164.92977 * 7 2 1 9 9 N 1.36850 * 119.99565 * 344.92899 * 7 2 1 10 10 C 1.46916 * 120.52649 * 333.29904 * 9 7 2 11 11 C 1.53431 * 107.85580 * 224.78408 * 10 9 7 12 12 C 1.52871 * 108.83354 * 296.76118 * 11 10 9 13 13 C 1.50603 * 110.46079 * 51.23653 * 12 11 10 14 14 C 1.38813 * 121.48196 * 339.46277 * 13 12 11 15 15 C 1.39196 * 119.99365 * 180.20186 * 14 13 12 16 16 C 1.38015 * 120.01197 * 359.85427 * 15 14 13 17 17 C 1.38305 * 119.92765 * 0.03186 * 16 15 14 18 18 C 1.38217 * 120.19473 * 0.04230 * 17 16 15 19 19 C 1.50699 * 119.84742 * 180.02562 * 18 17 16 20 20 F 1.39899 * 109.46756 * 359.97438 * 19 18 17 21 21 F 1.39904 * 109.47217 * 119.97899 * 19 18 17 22 22 F 1.39900 * 109.47189 * 239.97739 * 19 18 17 23 23 H 0.96999 * 119.99722 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.79649 * 105.17686 * 10 9 7 25 25 H 1.08998 * 109.79263 * 344.38647 * 10 9 7 26 26 H 1.08997 * 109.58275 * 56.56409 * 11 10 9 27 27 H 1.09004 * 109.57722 * 176.83006 * 11 10 9 28 28 H 1.08996 * 109.30543 * 171.54535 * 12 11 10 29 29 H 1.09004 * 109.30370 * 290.93424 * 12 11 10 30 30 H 1.08001 * 119.99910 * 179.89485 * 15 14 13 31 31 H 1.08001 * 120.04038 * 180.02562 * 16 15 14 32 32 H 1.08005 * 119.90696 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.1037 1.6963 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1037 1.6963 1.2125 7 6 2.0099 -1.2020 0.0005 8 1 3.0621 -1.2182 -0.2426 9 7 1.3609 -2.3666 0.3092 10 6 0.1728 -2.3524 1.1733 11 6 0.3164 -3.4930 2.1894 12 6 0.3335 -4.8241 1.4378 13 6 1.3506 -4.7889 0.3277 14 6 1.8167 -3.5884 -0.1906 15 6 2.7541 -3.5920 -1.2196 16 6 3.2224 -4.7889 -1.7227 17 6 2.7588 -5.9841 -1.2036 18 6 1.8269 -5.9838 -0.1828 19 6 1.3276 -7.2907 0.3773 20 9 1.9473 -8.3517 -0.2916 21 9 1.6299 -7.3592 1.7416 22 9 -0.0578 -7.3743 0.2018 23 1 -0.4850 0.8401 -0.0004 24 1 -0.7231 -2.5047 0.5716 25 1 0.1082 -1.3982 1.6963 26 1 1.2478 -3.3742 2.7429 27 1 -0.5251 -3.4733 2.8820 28 1 0.5848 -5.6264 2.1315 29 1 -0.6538 -5.0126 1.0161 30 1 3.1155 -2.6581 -1.6241 31 1 3.9500 -4.7922 -2.5208 32 1 3.1259 -6.9205 -1.5972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425559247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:03 Heat of formation + Delta-G solvation = -122.104251 kcal Electronic energy + Delta-G solvation = -21347.771792 eV Core-core repulsion = 17664.936308 eV Total energy + Delta-G solvation = -3682.835484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.75279 -47.27274 -47.17314 -39.34103 -36.10768 -33.80667 -32.06095 -29.92941 -29.21047 -25.91372 -25.24054 -23.35372 -22.43723 -20.98938 -18.99837 -18.05037 -18.02785 -17.89276 -16.66046 -15.59231 -15.21026 -14.71345 -14.57938 -14.17946 -14.06892 -13.78706 -13.58466 -13.36817 -13.21441 -13.03601 -12.92324 -12.63968 -12.20166 -12.13777 -11.72871 -11.47045 -11.22082 -10.87026 -10.77108 -10.59593 -10.39029 -9.99135 -9.75161 -9.39113 -8.72575 -8.13445 -6.79249 -6.48883 -3.90330 1.88721 2.35894 3.08144 3.11236 3.12835 3.19237 3.93479 4.32270 4.35216 4.56645 4.81086 4.86100 5.01696 5.44270 5.53584 5.75795 5.82005 5.98289 6.12112 6.25211 6.40113 6.46097 6.49950 6.64559 6.71342 6.90402 7.08767 7.13371 7.21240 7.26985 7.33913 7.63585 7.92531 8.48895 9.11645 9.49434 10.49028 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.031567 B = 0.006109 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.800916 B = 4582.521370 C = 5159.680558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.030 3.970 3 Si 0.926 3.074 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.095 0.905 9 N -0.438 5.438 10 C 0.143 3.857 11 C -0.141 4.141 12 C -0.080 4.080 13 C -0.147 4.147 14 C 0.209 3.791 15 C -0.182 4.182 16 C -0.074 4.074 17 C -0.198 4.198 18 C -0.131 4.131 19 C 0.508 3.492 20 F -0.185 7.185 21 F -0.183 7.183 22 F -0.183 7.183 23 H 0.272 0.728 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 -7.457 1.382 7.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.175 4.175 3 Si 0.753 3.247 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.434 4.434 8 H 0.112 0.888 9 N -0.123 5.123 10 C 0.019 3.981 11 C -0.179 4.179 12 C -0.117 4.117 13 C -0.153 4.153 14 C 0.091 3.909 15 C -0.206 4.206 16 C -0.094 4.094 17 C -0.220 4.220 18 C -0.133 4.133 19 C 0.454 3.546 20 F -0.166 7.166 21 F -0.164 7.164 22 F -0.164 7.164 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.236 -6.979 1.540 7.253 hybrid contribution 0.234 0.583 0.001 0.628 sum 1.470 -6.396 1.541 6.741 Atomic orbital electron populations 1.70039 1.05977 1.28148 1.46159 1.25405 0.95543 0.99990 0.96598 0.85986 0.79057 0.80483 0.79216 1.19627 1.20725 1.19745 1.19526 0.93960 0.83132 1.46824 0.88777 1.42782 1.25785 1.02335 1.41439 1.21483 0.87875 0.97758 0.90981 1.21989 1.01723 0.95734 0.98459 1.20462 0.97478 0.98422 0.95379 1.18607 1.04269 0.90720 1.01747 1.17637 0.95496 0.85690 0.92057 1.20773 1.02777 0.98052 0.98962 1.20588 0.98480 0.91752 0.98560 1.20116 1.02703 0.98201 1.01017 1.19313 1.02801 0.89627 1.01562 1.18575 0.75052 0.85589 0.75376 1.93104 1.82807 1.60170 1.80543 1.93123 1.92970 1.96695 1.33618 1.93167 1.31327 1.96783 1.95126 0.91770 0.92760 0.89038 0.91916 0.91520 0.91301 0.91496 0.85840 0.86938 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.06 11.15 55.49 0.62 -21.44 16 2 C 0.03 0.73 4.97 -17.45 -0.09 0.65 16 3 Si 0.93 19.02 29.58 -169.99 -5.03 14.00 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 7 C -0.31 -7.61 8.66 -15.10 -0.13 -7.74 16 8 H 0.09 2.27 6.88 -52.49 -0.36 1.91 16 9 N -0.44 -10.53 2.99 -112.51 -0.34 -10.87 16 10 C 0.14 3.17 4.97 -3.59 -0.02 3.15 16 11 C -0.14 -2.63 6.11 -26.57 -0.16 -2.79 16 12 C -0.08 -1.50 4.58 -28.00 -0.13 -1.63 16 13 C -0.15 -3.05 5.73 -104.40 -0.60 -3.65 16 14 C 0.21 4.73 6.33 -83.72 -0.53 4.20 16 15 C -0.18 -3.82 9.20 -39.31 -0.36 -4.18 16 16 C -0.07 -1.36 10.04 -39.64 -0.40 -1.76 16 17 C -0.20 -3.61 9.42 -39.56 -0.37 -3.98 16 18 C -0.13 -2.52 5.38 -104.57 -0.56 -3.08 16 19 C 0.51 8.83 2.84 36.01 0.10 8.93 16 20 F -0.18 -3.03 15.95 2.25 0.04 -2.99 16 21 F -0.18 -3.12 15.25 2.25 0.03 -3.09 16 22 F -0.18 -3.16 16.28 2.25 0.04 -3.13 16 23 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 24 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.09 2.15 6.44 -51.93 -0.33 1.81 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.21 5.75 -51.93 -0.30 0.91 16 29 H 0.07 1.22 7.96 -51.93 -0.41 0.81 16 30 H 0.12 2.60 6.59 -52.49 -0.35 2.26 16 31 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.11 1.82 7.13 -52.48 -0.37 1.45 16 LS Contribution 272.28 15.07 4.10 4.10 Total: -1.00 -25.29 272.28 -6.73 -32.03 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -2.95 Total: 3.29 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -3.25 Total: -11.89 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.28 Total: -32.31 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 0.11 Total: -9.21 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -25.29 -6.73 -32.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425559247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.078 kcal (2) G-P(sol) polarization free energy of solvation -25.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds