Wall clock time and date at job start Mon Mar 30 2020 01:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31592 * 1 3 3 Si 1.86801 * 120.00234 * 2 1 4 4 H 1.48507 * 109.46963 * 240.00220 * 3 2 1 5 5 H 1.48504 * 109.47078 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47134 * 119.99917 * 3 2 1 7 7 C 1.38798 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00313 * 164.92977 * 7 2 1 9 9 N 1.36850 * 119.99565 * 344.92899 * 7 2 1 10 10 C 1.46916 * 120.52649 * 333.29904 * 9 7 2 11 11 C 1.53431 * 107.85580 * 224.78408 * 10 9 7 12 12 C 1.52871 * 108.83354 * 296.76118 * 11 10 9 13 13 C 1.50603 * 110.46079 * 51.23653 * 12 11 10 14 14 C 1.38813 * 121.48196 * 339.46277 * 13 12 11 15 15 C 1.39196 * 119.99365 * 180.20186 * 14 13 12 16 16 C 1.38015 * 120.01197 * 359.85427 * 15 14 13 17 17 C 1.38305 * 119.92765 * 0.03186 * 16 15 14 18 18 C 1.38217 * 120.19473 * 0.04230 * 17 16 15 19 19 C 1.50699 * 119.84742 * 180.02562 * 18 17 16 20 20 F 1.39899 * 109.46756 * 359.97438 * 19 18 17 21 21 F 1.39904 * 109.47217 * 119.97899 * 19 18 17 22 22 F 1.39900 * 109.47189 * 239.97739 * 19 18 17 23 23 H 0.96999 * 119.99722 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.79649 * 105.17686 * 10 9 7 25 25 H 1.08998 * 109.79263 * 344.38647 * 10 9 7 26 26 H 1.08997 * 109.58275 * 56.56409 * 11 10 9 27 27 H 1.09004 * 109.57722 * 176.83006 * 11 10 9 28 28 H 1.08996 * 109.30543 * 171.54535 * 12 11 10 29 29 H 1.09004 * 109.30370 * 290.93424 * 12 11 10 30 30 H 1.08001 * 119.99910 * 179.89485 * 15 14 13 31 31 H 1.08001 * 120.04038 * 180.02562 * 16 15 14 32 32 H 1.08005 * 119.90696 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.1037 1.6963 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1037 1.6963 1.2125 7 6 2.0099 -1.2020 0.0005 8 1 3.0621 -1.2182 -0.2426 9 7 1.3609 -2.3666 0.3092 10 6 0.1728 -2.3524 1.1733 11 6 0.3164 -3.4930 2.1894 12 6 0.3335 -4.8241 1.4378 13 6 1.3506 -4.7889 0.3277 14 6 1.8167 -3.5884 -0.1906 15 6 2.7541 -3.5920 -1.2196 16 6 3.2224 -4.7889 -1.7227 17 6 2.7588 -5.9841 -1.2036 18 6 1.8269 -5.9838 -0.1828 19 6 1.3276 -7.2907 0.3773 20 9 1.9473 -8.3517 -0.2916 21 9 1.6299 -7.3592 1.7416 22 9 -0.0578 -7.3743 0.2018 23 1 -0.4850 0.8401 -0.0004 24 1 -0.7231 -2.5047 0.5716 25 1 0.1082 -1.3982 1.6963 26 1 1.2478 -3.3742 2.7429 27 1 -0.5251 -3.4733 2.8820 28 1 0.5848 -5.6264 2.1315 29 1 -0.6538 -5.0126 1.0161 30 1 3.1155 -2.6581 -1.6241 31 1 3.9500 -4.7922 -2.5208 32 1 3.1259 -6.9205 -1.5972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425559247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:03 Heat of formation + Delta-G solvation = -133.053273 kcal Electronic energy + Delta-G solvation = -21348.246577 eV Core-core repulsion = 17664.936308 eV Total energy + Delta-G solvation = -3683.310269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -51.12497 -48.62427 -48.55066 -40.95545 -37.73903 -35.42317 -33.78101 -31.49690 -30.84196 -27.65471 -26.71500 -25.02680 -24.00748 -22.55411 -20.57780 -19.61273 -19.41239 -19.28976 -18.34284 -17.25514 -16.76968 -16.36999 -16.16082 -15.64689 -15.45696 -15.21442 -15.00311 -14.72973 -14.71966 -14.66455 -14.40783 -14.25172 -13.79168 -13.65322 -13.37476 -13.05539 -12.85736 -12.53629 -12.31819 -12.19507 -11.99519 -11.57248 -11.34814 -11.12225 -10.46579 -9.68924 -8.54439 -8.25260 -5.76255 0.30390 0.78663 1.42290 1.46638 1.52241 1.77403 2.25412 2.74022 2.85755 3.09129 3.10581 3.25766 3.56896 3.91588 3.99938 4.19894 4.35049 4.49492 4.52200 4.73403 4.83816 4.91212 4.96270 5.04640 5.16212 5.22126 5.37494 5.42886 5.53381 5.64556 5.74714 5.99193 6.23567 6.70760 7.37154 7.73535 8.70097 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.031567 B = 0.006109 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.800916 B = 4582.521370 C = 5159.680558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.014 4.014 3 Si 0.989 3.011 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.324 4.324 8 H 0.091 0.909 9 N -0.468 5.468 10 C 0.152 3.848 11 C -0.130 4.130 12 C -0.078 4.078 13 C -0.159 4.159 14 C 0.185 3.815 15 C -0.198 4.198 16 C -0.068 4.068 17 C -0.182 4.182 18 C -0.142 4.142 19 C 0.517 3.483 20 F -0.175 7.175 21 F -0.179 7.179 22 F -0.181 7.181 23 H 0.270 0.730 24 H 0.030 0.970 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.150 0.850 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.600 -9.189 1.177 9.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.215 4.215 3 Si 0.813 3.187 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.452 4.452 8 H 0.108 0.892 9 N -0.157 5.157 10 C 0.028 3.972 11 C -0.168 4.168 12 C -0.114 4.114 13 C -0.165 4.165 14 C 0.071 3.929 15 C -0.222 4.222 16 C -0.087 4.087 17 C -0.204 4.204 18 C -0.144 4.144 19 C 0.463 3.537 20 F -0.157 7.157 21 F -0.161 7.161 22 F -0.163 7.163 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.167 0.833 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.293 -8.764 1.322 9.155 hybrid contribution -0.008 0.866 -0.031 0.866 sum 2.285 -7.898 1.291 8.323 Atomic orbital electron populations 1.70150 1.07183 1.28498 1.48170 1.26154 0.96219 1.02655 0.96455 0.85037 0.77758 0.76723 0.79203 1.19167 1.20728 1.19404 1.19703 0.94051 0.84136 1.47270 0.89163 1.42859 1.26789 1.02542 1.43506 1.21271 0.86818 0.98098 0.91024 1.21918 1.02627 0.94424 0.97859 1.20481 0.97175 0.98644 0.95147 1.18904 1.04653 0.90696 1.02256 1.18084 0.95946 0.86058 0.92806 1.20953 1.03052 0.99047 0.99148 1.20975 0.98345 0.90586 0.98749 1.20586 1.00946 0.99389 0.99496 1.19597 1.02909 0.90101 1.01797 1.18238 0.75059 0.84980 0.75448 1.93126 1.82631 1.59541 1.80360 1.93133 1.92949 1.96643 1.33361 1.93176 1.31233 1.96741 1.95129 0.92024 0.95140 0.91112 0.92414 0.88683 0.89724 0.91143 0.86742 0.83262 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.75 11.15 21.65 0.24 -47.51 16 2 C -0.01 -0.68 4.97 84.86 0.42 -0.26 16 3 Si 0.99 39.92 29.58 68.60 2.03 41.95 16 4 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.32 -16.60 8.66 84.04 0.73 -15.87 16 8 H 0.09 4.51 6.88 -2.91 -0.02 4.49 16 9 N -0.47 -23.14 2.99 -509.88 -1.52 -24.66 16 10 C 0.15 6.98 4.97 86.44 0.43 7.41 16 11 C -0.13 -4.82 6.11 30.70 0.19 -4.63 16 12 C -0.08 -2.80 4.58 29.77 0.14 -2.67 16 13 C -0.16 -6.41 5.73 -19.72 -0.11 -6.52 16 14 C 0.19 8.41 6.33 38.26 0.24 8.66 16 15 C -0.20 -8.22 9.20 22.45 0.21 -8.01 16 16 C -0.07 -2.29 10.04 22.23 0.22 -2.06 16 17 C -0.18 -5.99 9.42 22.28 0.21 -5.78 16 18 C -0.14 -5.09 5.38 -19.83 -0.11 -5.19 16 19 C 0.52 16.35 2.84 71.24 0.20 16.55 16 20 F -0.18 -5.08 15.95 44.97 0.72 -4.36 16 21 F -0.18 -5.60 15.25 44.97 0.69 -4.92 16 22 F -0.18 -5.79 16.28 44.97 0.73 -5.06 16 23 H 0.27 13.58 8.31 -92.71 -0.77 12.80 16 24 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 3.49 6.44 -2.39 -0.02 3.47 16 26 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.08 2.78 5.75 -2.39 -0.01 2.76 16 29 H 0.07 2.49 7.96 -2.38 -0.02 2.47 16 30 H 0.11 4.89 6.59 -2.91 -0.02 4.87 16 31 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.14 3.88 7.13 -2.91 -0.02 3.86 16 Total: -1.00 -54.74 272.28 6.81 -47.93 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.16 Total: 15.02 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 2.77 Total: -18.39 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -1.28 Total: -72.17 kcal Atomic # 9 Polarization: -16.47 SS G_CDS: 2.14 Total: -14.33 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -54.74 6.81 -47.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425559247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.124 kcal (2) G-P(sol) polarization free energy of solvation -54.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds