Wall clock time and date at job start Mon Mar 30 2020 00:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35714 * 117.00189 * 2 1 4 4 C 1.38824 * 120.14267 * 270.02475 * 3 2 1 5 5 F 1.35102 * 119.94448 * 359.97438 * 4 3 2 6 6 C 1.38273 * 120.11351 * 179.97438 * 4 3 2 7 7 C 1.38454 * 120.40712 * 359.97438 * 6 4 3 8 8 C 1.38082 * 120.28840 * 359.78450 * 7 6 4 9 9 F 1.35103 * 120.05946 * 180.23051 * 8 7 6 10 10 C 1.39985 * 119.87923 * 0.47352 * 8 7 6 11 11 C 1.47398 * 120.20160 * 179.78961 * 10 8 7 12 12 O 1.21613 * 119.99746 * 269.71930 * 11 10 8 13 13 N 1.34771 * 120.00596 * 89.44532 * 11 10 8 14 14 C 1.46499 * 120.00560 * 180.27826 * 13 11 10 15 15 C 1.50701 * 109.47264 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00145 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99634 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00657 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99703 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47233 * 60.00389 * 19 17 15 21 21 H 1.48504 * 109.47293 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47194 * 300.00217 * 19 17 15 23 23 H 1.09000 * 109.46895 * 300.00459 * 1 2 3 24 24 H 1.09007 * 109.47321 * 59.99765 * 1 2 3 25 25 H 1.08991 * 109.47366 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.79694 * 180.02562 * 6 4 3 27 27 H 1.08000 * 119.85301 * 180.02562 * 7 6 4 28 28 H 0.97000 * 119.99371 * 0.27095 * 13 11 10 29 29 H 1.08998 * 109.46795 * 299.99882 * 14 13 11 30 30 H 1.08997 * 109.47029 * 59.99496 * 14 13 11 31 31 H 0.96990 * 120.00229 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 2.3612 1.8306 -1.2005 5 9 2.0553 1.2303 -2.3716 6 6 2.9885 3.0628 -1.1998 7 6 3.3059 3.6869 -0.0054 8 6 2.9948 3.0862 1.1984 9 9 3.3024 3.7015 2.3612 10 6 2.3646 1.8363 1.2118 11 6 2.0334 1.1866 2.4927 12 8 2.8352 0.4404 3.0212 13 7 0.8443 1.4236 3.0810 14 6 0.5176 0.7826 4.3572 15 6 -0.8589 1.2108 4.7966 16 1 -1.4327 1.8927 4.1866 17 6 -1.3854 0.7322 5.9775 18 7 -0.6865 -0.0978 6.7207 19 14 -3.0919 1.2624 6.5219 20 1 -4.0866 0.8587 5.4958 21 1 -3.4235 0.6118 7.8150 22 1 -3.1225 2.7379 6.6874 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.2316 3.5418 -2.1367 27 1 3.7955 4.6495 -0.0153 28 1 0.2048 2.0188 2.6595 29 1 0.5401 -0.3004 4.2360 30 1 1.2477 1.0792 5.1102 31 1 -1.0571 -0.4348 7.5512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427626222.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:54 Heat of formation + Delta-G solvation = -137.148854 kcal Electronic energy + Delta-G solvation = -20598.827282 eV Core-core repulsion = 16902.966626 eV Total energy + Delta-G solvation = -3695.860656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.10728 -49.03768 -40.21642 -38.30146 -37.34566 -34.30588 -32.45837 -31.23375 -30.05524 -27.53743 -26.91035 -24.40746 -22.75956 -22.43969 -20.22879 -18.62900 -18.06384 -17.83360 -16.76536 -16.48129 -16.17322 -15.64602 -15.54546 -15.22041 -15.04502 -14.73719 -14.59686 -14.36868 -14.01785 -13.37467 -13.07846 -12.78187 -12.33396 -12.07736 -11.95899 -11.78635 -11.48978 -11.07083 -10.91308 -10.42353 -10.26943 -9.52636 -9.39527 -9.21268 -8.80327 -8.75592 -8.02734 -6.20947 -4.28885 0.52982 0.60980 2.83595 2.99585 3.22266 3.27302 3.28659 3.34641 3.66101 3.96241 4.11376 4.29804 4.44287 4.70084 4.86884 5.14089 5.15159 5.21438 5.34122 5.55573 5.62420 5.64341 5.68514 5.74249 6.28874 7.16532 7.21165 7.25034 7.43958 7.56684 7.89743 8.44080 8.65864 8.89724 9.37383 10.89121 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023847 B = 0.005179 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.892147 B = 5405.268003 C = 5877.832414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.320 6.320 3 C 0.126 3.874 4 C 0.068 3.932 5 F -0.126 7.126 6 C -0.104 4.104 7 C -0.134 4.134 8 C 0.137 3.863 9 F -0.119 7.119 10 C -0.145 4.145 11 C 0.552 3.448 12 O -0.529 6.529 13 N -0.698 5.698 14 C 0.249 3.751 15 C -0.546 4.546 16 H 0.063 0.937 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.104 0.896 26 H 0.153 0.847 27 H 0.154 0.846 28 H 0.391 0.609 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.461 7.622 -16.775 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.236 6.236 3 C 0.079 3.921 4 C 0.048 3.952 5 F -0.105 7.105 6 C -0.123 4.123 7 C -0.152 4.152 8 C 0.117 3.883 9 F -0.097 7.097 10 C -0.150 4.150 11 C 0.334 3.666 12 O -0.406 6.406 13 N -0.346 5.346 14 C 0.129 3.871 15 C -0.584 4.584 16 H 0.081 0.919 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.732 3.268 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.200 1.200 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.122 0.878 26 H 0.171 0.829 27 H 0.172 0.828 28 H 0.223 0.777 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.074 6.760 -16.149 17.975 hybrid contribution -1.315 0.647 0.167 1.475 sum 2.759 7.407 -15.983 17.830 Atomic orbital electron populations 1.23218 0.77030 1.04624 1.01323 1.86060 1.21082 1.22505 1.93937 1.18318 0.97478 0.86933 0.89326 1.17865 1.03475 0.93019 0.80839 1.91521 1.91175 1.83101 1.44681 1.20953 0.98430 0.93280 0.99609 1.20939 1.02654 1.01997 0.89649 1.17457 0.98335 0.90182 0.82341 1.91596 1.90338 1.81579 1.46178 1.20547 1.03986 0.94648 0.95802 1.17622 0.83533 0.82186 0.83279 1.90812 1.48867 1.36803 1.64130 1.46510 1.15441 1.47363 1.25256 1.19214 0.96010 0.93547 0.78290 1.21136 1.00577 1.29570 1.07140 0.91916 1.24936 0.98208 0.94665 0.96027 1.69958 1.37558 1.30825 1.13726 0.86463 0.83472 0.78871 0.78031 1.20058 1.21002 1.20027 0.92117 0.93177 0.87800 0.82891 0.82808 0.77664 0.95083 0.95147 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.13 101.05 1.12 1.54 16 2 O -0.32 -5.25 9.73 -18.85 -0.18 -5.43 16 3 C 0.13 1.92 5.74 -38.65 -0.22 1.70 16 4 C 0.07 0.84 7.30 -39.35 -0.29 0.55 16 5 F -0.13 -1.57 17.11 2.25 0.04 -1.53 16 6 C -0.10 -0.96 10.00 -39.49 -0.39 -1.36 16 7 C -0.13 -1.33 10.00 -39.56 -0.40 -1.72 16 8 C 0.14 1.96 7.28 -38.98 -0.28 1.67 16 9 F -0.12 -1.89 16.83 2.25 0.04 -1.85 16 10 C -0.14 -2.44 5.64 -104.80 -0.59 -3.03 16 11 C 0.55 11.83 6.43 -12.53 -0.08 11.75 16 12 O -0.53 -13.62 17.11 5.27 0.09 -13.53 16 13 N -0.70 -14.96 5.17 -62.58 -0.32 -15.29 16 14 C 0.25 6.56 5.43 -5.19 -0.03 6.54 16 15 C -0.55 -14.53 9.28 -34.44 -0.32 -14.85 16 16 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.88 -25.72 13.29 55.43 0.74 -24.98 16 19 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H 0.06 0.85 7.73 -51.93 -0.40 0.45 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 27 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.39 7.21 8.27 -40.82 -0.34 6.87 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 294.38 15.07 4.44 4.44 Total: -1.00 -32.70 294.38 -4.57 -37.27 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -2.81 Total: 0.93 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.58 Total: 4.48 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.41 Total: -40.26 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.09 Total: -18.96 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.08 Total: -3.38 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.70 -4.57 -37.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626222.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.878 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds