Wall clock time and date at job start Mon Mar 30 2020 00:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35714 * 117.00189 * 2 1 4 4 C 1.38824 * 120.14267 * 270.02475 * 3 2 1 5 5 F 1.35102 * 119.94448 * 359.97438 * 4 3 2 6 6 C 1.38273 * 120.11351 * 179.97438 * 4 3 2 7 7 C 1.38454 * 120.40712 * 359.97438 * 6 4 3 8 8 C 1.38082 * 120.28840 * 359.78450 * 7 6 4 9 9 F 1.35103 * 120.05946 * 180.23051 * 8 7 6 10 10 C 1.39985 * 119.87923 * 0.47352 * 8 7 6 11 11 C 1.47398 * 120.20160 * 179.78961 * 10 8 7 12 12 O 1.21613 * 119.99746 * 269.71930 * 11 10 8 13 13 N 1.34771 * 120.00596 * 89.44532 * 11 10 8 14 14 C 1.46499 * 120.00560 * 180.27826 * 13 11 10 15 15 C 1.50701 * 109.47264 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00145 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99634 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00657 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99703 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47233 * 60.00389 * 19 17 15 21 21 H 1.48504 * 109.47293 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47194 * 300.00217 * 19 17 15 23 23 H 1.09000 * 109.46895 * 300.00459 * 1 2 3 24 24 H 1.09007 * 109.47321 * 59.99765 * 1 2 3 25 25 H 1.08991 * 109.47366 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.79694 * 180.02562 * 6 4 3 27 27 H 1.08000 * 119.85301 * 180.02562 * 7 6 4 28 28 H 0.97000 * 119.99371 * 0.27095 * 13 11 10 29 29 H 1.08998 * 109.46795 * 299.99882 * 14 13 11 30 30 H 1.08997 * 109.47029 * 59.99496 * 14 13 11 31 31 H 0.96990 * 120.00229 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 2.3612 1.8306 -1.2005 5 9 2.0553 1.2303 -2.3716 6 6 2.9885 3.0628 -1.1998 7 6 3.3059 3.6869 -0.0054 8 6 2.9948 3.0862 1.1984 9 9 3.3024 3.7015 2.3612 10 6 2.3646 1.8363 1.2118 11 6 2.0334 1.1866 2.4927 12 8 2.8352 0.4404 3.0212 13 7 0.8443 1.4236 3.0810 14 6 0.5176 0.7826 4.3572 15 6 -0.8589 1.2108 4.7966 16 1 -1.4327 1.8927 4.1866 17 6 -1.3854 0.7322 5.9775 18 7 -0.6865 -0.0978 6.7207 19 14 -3.0919 1.2624 6.5219 20 1 -4.0866 0.8587 5.4958 21 1 -3.4235 0.6118 7.8150 22 1 -3.1225 2.7379 6.6874 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.2316 3.5418 -2.1367 27 1 3.7955 4.6495 -0.0153 28 1 0.2048 2.0188 2.6595 29 1 0.5401 -0.3004 4.2360 30 1 1.2477 1.0792 5.1102 31 1 -1.0571 -0.4348 7.5512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427626222.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:53 Heat of formation + Delta-G solvation = -160.954560 kcal Electronic energy + Delta-G solvation = -20599.859575 eV Core-core repulsion = 16902.966626 eV Total energy + Delta-G solvation = -3696.892949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.19325 -50.06150 -41.51878 -39.89204 -38.39546 -36.30418 -34.47338 -32.43943 -31.06653 -29.41475 -28.08002 -25.85781 -24.25693 -23.75480 -21.88780 -19.99295 -19.30890 -18.92071 -18.28582 -17.66237 -17.56913 -17.11567 -16.99197 -16.62398 -16.22837 -16.12288 -15.91325 -15.72684 -15.46309 -14.85426 -14.30649 -14.09851 -13.98835 -13.68156 -13.34846 -13.11435 -12.91736 -12.70272 -12.54064 -12.28248 -11.58323 -11.49704 -11.09070 -10.84209 -10.30716 -10.04397 -9.76410 -8.31888 -6.49830 -0.49282 -0.37633 1.32639 1.42147 1.46468 1.54739 1.88841 2.11543 2.30170 2.39712 2.95989 3.02590 3.03440 3.43911 3.66438 3.76711 4.03765 4.23538 4.30026 4.55673 4.61261 4.66874 4.75168 4.86691 5.01495 5.14713 5.31416 5.38475 5.54022 5.76695 6.09859 6.54183 6.64049 7.08794 7.26019 8.80204 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023847 B = 0.005179 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.892147 B = 5405.268003 C = 5877.832414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.109 3.891 4 C 0.070 3.930 5 F -0.125 7.125 6 C -0.069 4.069 7 C -0.105 4.105 8 C 0.122 3.878 9 F -0.135 7.135 10 C -0.176 4.176 11 C 0.554 3.446 12 O -0.585 6.585 13 N -0.689 5.689 14 C 0.267 3.733 15 C -0.558 4.558 16 H 0.085 0.915 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.986 3.014 20 H -0.260 1.260 21 H -0.285 1.285 22 H -0.262 1.262 23 H 0.044 0.956 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.205 0.795 27 H 0.200 0.800 28 H 0.407 0.593 29 H -0.007 1.007 30 H -0.010 1.010 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 10.361 -19.574 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.063 3.937 4 C 0.050 3.950 5 F -0.103 7.103 6 C -0.087 4.087 7 C -0.123 4.123 8 C 0.102 3.898 9 F -0.114 7.114 10 C -0.181 4.181 11 C 0.339 3.661 12 O -0.466 6.466 13 N -0.338 5.338 14 C 0.145 3.855 15 C -0.596 4.596 16 H 0.103 0.897 17 C -0.193 4.193 18 N -0.568 5.568 19 Si 0.809 3.191 20 H -0.185 1.185 21 H -0.210 1.210 22 H -0.187 1.187 23 H 0.063 0.937 24 H 0.096 0.904 25 H 0.130 0.870 26 H 0.222 0.778 27 H 0.217 0.783 28 H 0.243 0.757 29 H 0.011 0.989 30 H 0.008 0.992 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.209 9.534 -19.000 21.498 hybrid contribution -0.974 -0.202 0.938 1.368 sum 2.234 9.332 -18.062 20.452 Atomic orbital electron populations 1.23361 0.75896 1.05455 1.01844 1.86008 1.22532 1.23876 1.94151 1.18502 0.98290 0.86867 0.90001 1.17946 1.03616 0.93813 0.79655 1.91533 1.91217 1.83359 1.44219 1.21526 0.94693 0.91149 1.01335 1.21408 1.00481 1.02905 0.87533 1.17829 0.98975 0.89560 0.83423 1.91557 1.90589 1.81670 1.47539 1.20152 1.07846 0.96584 0.93495 1.18330 0.82276 0.81003 0.84499 1.90760 1.50329 1.39247 1.66239 1.46225 1.16346 1.47333 1.23872 1.18664 0.95643 0.91632 0.79553 1.21506 1.00457 1.29881 1.07713 0.89744 1.26061 1.03014 0.94299 0.95918 1.70129 1.40002 1.32285 1.14338 0.85186 0.77498 0.78842 0.77567 1.18460 1.21018 1.18679 0.93709 0.90394 0.86980 0.77759 0.78285 0.75745 0.98893 0.99184 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.13 113.37 1.26 1.99 16 2 O -0.35 -11.66 9.73 -90.36 -0.88 -12.54 16 3 C 0.11 3.28 5.74 22.87 0.13 3.41 16 4 C 0.07 1.50 7.30 22.42 0.16 1.66 16 5 F -0.12 -2.70 17.11 44.97 0.77 -1.93 16 6 C -0.07 -0.89 10.00 22.33 0.22 -0.67 16 7 C -0.11 -1.58 10.00 22.28 0.22 -1.36 16 8 C 0.12 3.30 7.28 22.66 0.17 3.47 16 9 F -0.14 -4.26 16.83 44.97 0.76 -3.50 16 10 C -0.18 -5.99 5.64 -19.98 -0.11 -6.10 16 11 C 0.55 25.18 6.43 86.66 0.56 25.74 16 12 O -0.58 -32.48 17.11 -4.07 -0.07 -32.55 16 13 N -0.69 -31.23 5.17 -470.14 -2.43 -33.66 16 14 C 0.27 15.03 5.43 85.63 0.46 15.50 16 15 C -0.56 -30.42 9.28 25.60 0.24 -30.18 16 16 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 17 C 0.01 0.40 5.46 84.65 0.46 0.86 16 18 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 19 Si 0.99 41.96 29.54 68.60 2.03 43.98 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 H 0.04 1.29 7.73 -2.39 -0.02 1.27 16 24 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.21 0.71 8.06 -2.91 -0.02 0.68 16 27 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 28 H 0.41 15.51 8.27 -92.71 -0.77 14.75 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.27 15.23 8.31 -92.72 -0.77 14.46 16 Total: -1.00 -77.63 294.38 4.65 -72.98 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.42 Total: 8.74 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 3.78 Total: 14.32 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -2.15 Total: -89.50 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -0.95 Total: -45.09 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 1.53 Total: -5.43 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -77.63 4.65 -72.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626222.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.977 kcal (2) G-P(sol) polarization free energy of solvation -77.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds