Wall clock time and date at job start Mon Mar 30 2020 01:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47168 * 2 1 4 4 C 1.36934 * 120.00156 * 275.04138 * 3 2 1 5 5 H 1.07997 * 120.00152 * 37.93263 * 4 3 2 6 6 C 1.38813 * 119.99954 * 217.92861 * 4 3 2 7 7 N 1.31617 * 120.00272 * 21.29236 * 6 4 3 8 8 Si 1.86804 * 119.99826 * 201.29033 * 6 4 3 9 9 H 1.48500 * 109.47370 * 90.00298 * 8 6 4 10 10 H 1.48504 * 109.47050 * 210.00154 * 8 6 4 11 11 H 1.48503 * 109.47122 * 330.00025 * 8 6 4 12 12 C 1.46500 * 119.99840 * 95.31575 * 3 2 1 13 13 C 1.53001 * 109.47352 * 269.72310 * 12 3 2 14 14 C 1.50702 * 109.47418 * 179.97438 * 13 12 3 15 15 C 1.38247 * 119.98241 * 264.73328 * 14 13 12 16 16 C 1.38183 * 120.03915 * 179.72567 * 15 14 13 17 17 C 1.38496 * 119.99817 * 0.54376 * 16 15 14 18 18 F 1.35098 * 120.01683 * 179.74973 * 17 16 15 19 19 C 1.38414 * 119.95956 * 359.72804 * 17 16 15 20 20 C 1.38337 * 119.96628 * 359.97438 * 19 17 16 21 21 Cl 1.73600 * 120.00132 * 179.97438 * 20 19 17 22 22 H 1.08998 * 109.47070 * 300.00140 * 1 2 3 23 23 H 1.09002 * 109.46504 * 59.99996 * 1 2 3 24 24 H 1.08994 * 109.46816 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47598 * 240.00390 * 2 1 3 26 26 H 1.08998 * 109.47161 * 119.99713 * 2 1 3 27 27 H 0.96996 * 120.00181 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47459 * 29.72499 * 12 3 2 29 29 H 1.09007 * 109.46997 * 149.72760 * 12 3 2 30 30 H 1.08997 * 109.47282 * 300.00088 * 13 12 3 31 31 H 1.09007 * 109.46703 * 60.00269 * 13 12 3 32 32 H 1.08003 * 119.97801 * 359.97438 * 15 14 13 33 33 H 1.08001 * 120.00130 * 180.27037 * 16 15 14 34 34 H 1.07997 * 120.01413 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1483 2.0615 -1.1813 5 1 1.4161 1.9292 -1.9640 6 6 3.2212 2.9213 -1.3726 7 7 4.3100 2.7870 -0.6454 8 14 3.1197 4.2688 -2.6624 9 1 2.5624 5.5007 -2.0484 10 1 4.4783 4.5506 -3.1918 11 1 2.2380 3.8263 -3.7723 12 6 2.3733 2.0326 1.2633 13 6 1.1445 2.7440 1.8333 14 6 1.5095 3.4135 3.1331 15 6 1.2759 2.7671 4.3327 16 6 1.6153 3.3776 5.5249 17 6 2.1795 4.6424 5.5192 18 9 2.5068 5.2417 6.6849 19 6 2.4082 5.2919 4.3185 20 6 2.0735 4.6767 3.1255 21 17 2.3593 5.4907 1.6190 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.0598 3.3876 -0.7794 28 1 2.7211 1.2826 1.9737 29 1 3.1652 2.7606 1.0867 30 1 0.7968 3.4940 1.1229 31 1 0.3526 2.0159 2.0098 32 1 0.8316 1.7828 4.3376 33 1 1.4366 2.8703 6.4615 34 1 2.8485 6.2780 4.3130 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428449399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:44 Heat of formation + Delta-G solvation = -31.035890 kcal Electronic energy + Delta-G solvation = -18699.141603 eV Core-core repulsion = 15572.051820 eV Total energy + Delta-G solvation = -3127.089783 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.94834 -40.35878 -37.84245 -37.35697 -34.01978 -33.65942 -31.93590 -30.68730 -28.77815 -26.15470 -24.13302 -24.09556 -22.23131 -21.77156 -18.80449 -18.54398 -17.70338 -16.86255 -16.67650 -16.53494 -15.74759 -15.69647 -15.40805 -14.82597 -14.72382 -14.41679 -14.10626 -13.88570 -13.49089 -13.23526 -12.93315 -12.78037 -12.63728 -12.48517 -12.29243 -12.22849 -12.17246 -11.91909 -11.72523 -11.36670 -11.17786 -10.43052 -9.98110 -9.53741 -8.46465 -7.74244 -5.37289 0.00811 0.08414 1.15973 1.41866 1.46384 1.50774 2.43362 2.52892 3.21739 3.31672 3.64305 3.73562 3.93622 4.05075 4.20740 4.46199 4.51924 4.59873 4.76090 4.88558 4.90278 4.94383 4.96853 5.05491 5.12394 5.16416 5.31275 5.38301 5.57906 5.65383 5.75931 5.77891 5.97945 6.55042 7.26185 7.95782 8.47435 9.18781 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.007041 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.554029 B = 3976.035561 C = 5058.049658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 N -0.598 5.598 4 C -0.263 4.263 5 H 0.049 0.951 6 C -0.012 4.012 7 N -0.903 5.903 8 Si 0.925 3.075 9 H -0.287 1.287 10 H -0.295 1.295 11 H -0.271 1.271 12 C 0.154 3.846 13 C -0.090 4.090 14 C -0.079 4.079 15 C -0.076 4.076 16 C -0.135 4.135 17 C 0.090 3.910 18 F -0.138 7.138 19 C -0.151 4.151 20 C -0.026 4.026 21 Cl -0.067 7.067 22 H 0.051 0.949 23 H 0.032 0.968 24 H 0.065 0.935 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.249 0.751 28 H 0.023 0.977 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.166 0.834 33 H 0.172 0.828 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.608 0.835 12.368 14.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.319 5.319 4 C -0.394 4.394 5 H 0.067 0.933 6 C -0.211 4.211 7 N -0.546 5.546 8 Si 0.754 3.246 9 H -0.213 1.213 10 H -0.221 1.221 11 H -0.196 1.196 12 C 0.028 3.972 13 C -0.129 4.129 14 C -0.081 4.081 15 C -0.094 4.094 16 C -0.153 4.153 17 C 0.070 3.930 18 F -0.117 7.117 19 C -0.171 4.171 20 C -0.053 4.053 21 Cl -0.038 7.038 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.184 0.816 33 H 0.189 0.811 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.401 0.980 12.237 13.844 hybrid contribution 0.420 1.250 -0.948 1.624 sum -5.981 2.229 11.289 12.968 Atomic orbital electron populations 1.22183 0.97482 1.00731 1.00743 1.20995 0.93660 0.85748 0.98696 1.43977 1.76250 1.09495 1.02219 1.19048 1.03822 1.21782 0.94718 0.93331 1.25495 0.94115 1.02309 0.99172 1.70067 1.03437 1.37736 1.43409 0.85918 0.76639 0.81410 0.80595 1.21348 1.22138 1.19552 1.20830 0.95259 0.95989 0.85119 1.21217 1.00659 0.99329 0.91744 1.20182 0.97895 0.92512 0.97485 1.21163 0.98209 1.00728 0.89303 1.21503 0.99589 0.93297 1.00934 1.17497 1.01763 0.93159 0.80532 1.91495 1.90709 1.83601 1.45869 1.21022 1.03920 1.02299 0.89843 1.20738 1.02833 0.94542 0.87156 1.98417 1.94527 1.78863 1.31952 0.92977 0.94850 0.91595 0.95322 0.93449 0.94183 0.95841 0.90679 0.92690 0.90507 0.81648 0.81071 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 10.21 71.98 0.74 -4.28 16 2 C 0.13 5.39 6.44 86.38 0.56 5.94 16 3 N -0.60 -28.63 2.43 -702.00 -1.71 -30.34 16 4 C -0.26 -14.10 9.45 84.03 0.79 -13.30 16 5 H 0.05 2.65 7.92 -2.91 -0.02 2.63 16 6 C -0.01 -0.66 4.96 84.86 0.42 -0.24 16 7 N -0.90 -51.43 11.47 21.65 0.25 -51.18 16 8 Si 0.93 44.54 29.60 68.60 2.03 46.57 16 9 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 10 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 C 0.15 6.88 5.32 86.38 0.46 7.34 16 13 C -0.09 -3.33 5.18 29.85 0.15 -3.17 16 14 C -0.08 -2.52 5.14 -19.84 -0.10 -2.62 16 15 C -0.08 -1.84 9.67 22.26 0.22 -1.62 16 16 C -0.13 -2.89 10.03 22.32 0.22 -2.67 16 17 C 0.09 2.27 7.30 22.37 0.16 2.43 16 18 F -0.14 -3.40 17.27 44.97 0.78 -2.62 16 19 C -0.15 -4.30 9.81 22.34 0.22 -4.08 16 20 C -0.03 -0.86 6.31 22.32 0.14 -0.72 16 21 Cl -0.07 -2.55 27.16 -2.72 -0.07 -2.63 16 22 H 0.05 1.62 6.66 -2.39 -0.02 1.61 16 23 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 26 H 0.05 1.74 7.83 -2.39 -0.02 1.72 16 27 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 28 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 29 H 0.08 3.85 5.28 -2.38 -0.01 3.84 16 30 H 0.05 2.30 7.12 -2.39 -0.02 2.28 16 31 H 0.08 2.52 6.56 -2.38 -0.02 2.51 16 32 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -59.91 305.14 6.35 -53.56 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.10 Total: 3.63 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 3.98 Total: -17.00 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -1.46 Total: -81.52 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.62 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -0.07 Total: -2.63 kcal Total: -59.91 6.35 -53.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428449399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.524 kcal (2) G-P(sol) polarization free energy of solvation -59.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds