Wall clock time and date at job start Mon Mar 30 2020 01:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.53000 * 109.46840 * 269.99975 * 4 3 2 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 3 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99711 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00219 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46794 * 90.00022 * 10 8 6 12 12 H 1.48502 * 109.47140 * 210.00005 * 10 8 6 13 13 H 1.48501 * 109.46982 * 330.00118 * 10 8 6 14 14 C 1.39740 * 119.99664 * 269.99409 * 3 2 1 15 15 C 1.38927 * 120.05351 * 0.02562 * 14 3 2 16 16 C 1.38103 * 119.98877 * 179.97438 * 15 14 3 17 17 C 1.38351 * 120.08462 * 0.02562 * 16 15 14 18 18 Cl 1.73603 * 119.95008 * 179.97438 * 17 16 15 19 19 C 1.38582 * 120.10183 * 359.97438 * 17 16 15 20 20 F 1.35101 * 119.99429 * 179.97438 * 19 17 16 21 21 C 1.38338 * 120.01183 * 359.68008 * 19 17 16 22 22 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 23 23 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 24 24 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 26 26 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 27 27 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 28 28 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 29 29 H 1.09001 * 109.47194 * 299.99493 * 5 4 3 30 30 H 1.08992 * 109.47399 * 59.99666 * 5 4 3 31 31 H 0.97000 * 119.99684 * 179.97438 * 9 8 6 32 32 H 1.08005 * 120.00421 * 0.02562 * 15 14 3 33 33 H 1.07999 * 119.95955 * 179.97438 * 16 15 14 34 34 H 1.08004 * 120.04591 * 180.32648 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 0.9874 2.7932 1.7103 6 6 1.2388 3.5042 3.0151 7 1 2.2106 3.4470 3.4827 8 6 0.2280 4.2277 3.6117 9 7 0.4472 4.8478 4.7506 10 14 -1.4527 4.3272 2.8025 11 1 -2.3027 3.2107 3.2882 12 1 -2.0921 5.6224 3.1471 13 1 -1.2991 4.2275 1.3288 14 6 2.2513 2.0399 -1.2102 15 6 2.0197 1.3861 -2.4140 16 6 2.2499 2.0385 -3.6092 17 6 2.7115 3.3427 -3.6098 18 17 3.0003 4.1593 -5.1144 19 6 2.9437 3.9984 -2.4112 20 9 3.3949 5.2718 -2.4142 21 6 2.7077 3.3512 -1.2115 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.0644 2.7986 1.1383 28 1 2.5506 1.3453 2.0283 29 1 0.6993 3.5198 0.9506 30 1 0.1856 2.0665 1.8406 31 1 -0.2637 5.3571 5.1701 32 1 1.6590 0.3681 -2.4150 33 1 2.0701 1.5297 -4.5447 34 1 2.8834 3.8634 -0.2770 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440607904.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:05 Heat of formation + Delta-G solvation = -28.489072 kcal Electronic energy + Delta-G solvation = -18514.630318 eV Core-core repulsion = 15387.650973 eV Total energy + Delta-G solvation = -3126.979345 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.74444 -39.60280 -37.00460 -35.90918 -33.30565 -31.81557 -30.67208 -30.14645 -28.14156 -25.02533 -23.33570 -22.57163 -21.07274 -20.24497 -17.99459 -16.97178 -16.45447 -16.15314 -15.67048 -15.54829 -14.62721 -14.48685 -14.07560 -13.72646 -13.40807 -13.08153 -12.84066 -12.74630 -12.66511 -12.34745 -11.80482 -11.63843 -11.53111 -11.39134 -11.11911 -10.98761 -10.70825 -10.51327 -9.97942 -9.90736 -9.37096 -9.32555 -8.76748 -8.62761 -7.13668 -6.14324 -4.14157 1.24777 1.36901 2.25082 3.23736 3.24942 3.33057 3.37099 3.67597 4.31523 4.36999 4.74578 4.97056 5.12688 5.20221 5.31311 5.35781 5.40374 5.54409 5.66132 5.81769 5.92162 5.97843 6.04977 6.10556 6.21320 6.26770 6.37251 6.47525 6.73111 7.06155 7.15749 7.43414 7.61608 7.73312 8.39081 8.88509 9.47646 10.98634 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.005594 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.984334 B = 5004.572481 C = 5771.601398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.118 3.882 3 N -0.613 5.613 4 C 0.127 3.873 5 C -0.028 4.028 6 C -0.526 4.526 7 H 0.073 0.927 8 C 0.072 3.928 9 N -0.899 5.899 10 Si 0.876 3.124 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.265 1.265 14 C 0.262 3.738 15 C -0.208 4.208 16 C -0.036 4.036 17 C -0.146 4.146 18 Cl -0.074 7.074 19 C 0.160 3.840 20 F -0.129 7.129 21 C -0.224 4.224 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.264 0.736 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -8.997 -15.793 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.005 4.005 3 N -0.319 5.319 4 C 0.005 3.995 5 C -0.066 4.066 6 C -0.564 4.564 7 H 0.092 0.908 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.704 3.296 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.189 1.189 14 C 0.155 3.845 15 C -0.231 4.231 16 C -0.055 4.055 17 C -0.175 4.175 18 Cl -0.046 7.046 19 C 0.139 3.861 20 F -0.108 7.108 21 C -0.247 4.247 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.928 -8.880 -15.549 18.144 hybrid contribution -0.959 0.520 -0.326 1.139 sum 1.969 -8.360 -15.875 18.050 Atomic orbital electron populations 1.22339 0.96257 1.01664 1.03409 1.21439 0.94384 0.82291 1.02380 1.47210 1.68067 1.12949 1.03625 1.21770 0.99788 0.96031 0.81872 1.20008 0.93559 0.95755 0.97260 1.20972 0.99924 1.30865 1.04650 0.90844 1.24964 0.98697 0.94770 0.94538 1.69899 1.33524 1.32968 1.17323 0.86826 0.84564 0.77616 0.80638 1.20279 1.21235 1.18942 1.17637 0.90029 0.90303 0.86554 1.20637 1.10883 1.01429 0.90193 1.20543 0.95157 0.91323 0.98482 1.20526 1.15656 0.95756 0.85583 1.98331 1.95307 1.79335 1.31620 1.17068 0.97204 0.79406 0.92412 1.91519 1.86163 1.35785 1.97291 1.20737 1.10824 0.95447 0.97714 0.91257 0.92495 0.92121 0.91027 0.90422 0.90987 0.90913 0.96212 0.96487 0.92569 0.84807 0.84665 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 10.24 37.16 0.38 -1.80 16 2 C 0.12 1.40 5.92 -4.04 -0.02 1.38 16 3 N -0.61 -9.22 2.61 -171.75 -0.45 -9.67 16 4 C 0.13 2.26 5.13 -4.04 -0.02 2.24 16 5 C -0.03 -0.61 4.37 -27.88 -0.12 -0.74 16 6 C -0.53 -14.21 9.66 -34.44 -0.33 -14.54 16 7 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 10 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 14 C 0.26 3.92 6.55 -83.77 -0.55 3.37 16 15 C -0.21 -2.59 9.21 -39.38 -0.36 -2.95 16 16 C -0.04 -0.43 9.82 -39.59 -0.39 -0.82 16 17 C -0.15 -2.05 6.33 -39.41 -0.25 -2.30 16 18 Cl -0.07 -0.97 28.61 -51.86 -1.48 -2.46 16 19 C 0.16 2.54 7.27 -39.42 -0.29 2.25 16 20 F -0.13 -2.16 16.83 2.25 0.04 -2.12 16 21 C -0.22 -3.64 9.18 -39.32 -0.36 -4.00 16 22 H 0.07 1.03 6.26 -51.93 -0.33 0.71 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.69 6.20 -51.93 -0.32 0.37 16 26 H 0.08 0.86 7.89 -51.93 -0.41 0.45 16 27 H 0.07 1.30 6.21 -51.93 -0.32 0.97 16 28 H 0.07 1.25 7.89 -51.93 -0.41 0.84 16 29 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 30 H 0.02 0.38 5.69 -51.93 -0.30 0.08 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.13 1.35 6.14 -52.48 -0.32 1.03 16 33 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.15 2.62 6.15 -52.48 -0.32 2.30 16 LS Contribution 299.65 15.07 4.52 4.52 Total: -1.00 -29.36 299.65 -7.64 -37.01 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -3.96 Total: -1.78 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -2.41 Total: -15.95 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.33 Total: -35.95 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.48 Total: -2.46 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.36 -7.64 -37.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440607904.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.519 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds