Wall clock time and date at job start Mon Mar 30 2020 01:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.53000 * 109.46840 * 269.99975 * 4 3 2 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 3 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99711 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00219 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46794 * 90.00022 * 10 8 6 12 12 H 1.48502 * 109.47140 * 210.00005 * 10 8 6 13 13 H 1.48501 * 109.46982 * 330.00118 * 10 8 6 14 14 C 1.39740 * 119.99664 * 269.99409 * 3 2 1 15 15 C 1.38927 * 120.05351 * 0.02562 * 14 3 2 16 16 C 1.38103 * 119.98877 * 179.97438 * 15 14 3 17 17 C 1.38351 * 120.08462 * 0.02562 * 16 15 14 18 18 Cl 1.73603 * 119.95008 * 179.97438 * 17 16 15 19 19 C 1.38582 * 120.10183 * 359.97438 * 17 16 15 20 20 F 1.35101 * 119.99429 * 179.97438 * 19 17 16 21 21 C 1.38338 * 120.01183 * 359.68008 * 19 17 16 22 22 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 23 23 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 24 24 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 26 26 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 27 27 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 28 28 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 29 29 H 1.09001 * 109.47194 * 299.99493 * 5 4 3 30 30 H 1.08992 * 109.47399 * 59.99666 * 5 4 3 31 31 H 0.97000 * 119.99684 * 179.97438 * 9 8 6 32 32 H 1.08005 * 120.00421 * 0.02562 * 15 14 3 33 33 H 1.07999 * 119.95955 * 179.97438 * 16 15 14 34 34 H 1.08004 * 120.04591 * 180.32648 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 0.9874 2.7932 1.7103 6 6 1.2388 3.5042 3.0151 7 1 2.2106 3.4470 3.4827 8 6 0.2280 4.2277 3.6117 9 7 0.4472 4.8478 4.7506 10 14 -1.4527 4.3272 2.8025 11 1 -2.3027 3.2107 3.2882 12 1 -2.0921 5.6224 3.1471 13 1 -1.2991 4.2275 1.3288 14 6 2.2513 2.0399 -1.2102 15 6 2.0197 1.3861 -2.4140 16 6 2.2499 2.0385 -3.6092 17 6 2.7115 3.3427 -3.6098 18 17 3.0003 4.1593 -5.1144 19 6 2.9437 3.9984 -2.4112 20 9 3.3949 5.2718 -2.4142 21 6 2.7077 3.3512 -1.2115 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.0644 2.7986 1.1383 28 1 2.5506 1.3453 2.0283 29 1 0.6993 3.5198 0.9506 30 1 0.1856 2.0665 1.8406 31 1 -0.2637 5.3571 5.1701 32 1 1.6590 0.3681 -2.4150 33 1 2.0701 1.5297 -4.5447 34 1 2.8834 3.8634 -0.2770 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440607904.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:04 Heat of formation + Delta-G solvation = -43.902536 kcal Electronic energy + Delta-G solvation = -18515.298696 eV Core-core repulsion = 15387.650973 eV Total energy + Delta-G solvation = -3127.647723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.98673 -40.72410 -38.13323 -37.02749 -35.22196 -33.18217 -32.13119 -31.23184 -29.47845 -26.63469 -24.36652 -23.85981 -22.55138 -21.54057 -19.30932 -18.79034 -17.66341 -17.29819 -16.85698 -16.77845 -16.42479 -15.82814 -15.28889 -15.06610 -14.69293 -14.41143 -14.27570 -14.21545 -13.79935 -13.61458 -13.20780 -12.95160 -12.74604 -12.56475 -12.54559 -12.26494 -12.02088 -11.89554 -11.79305 -11.56571 -11.27426 -10.79105 -10.54396 -9.89392 -8.34366 -8.28481 -6.37181 0.13426 0.27992 1.17885 1.29032 1.33262 1.43466 2.10608 2.30814 2.58486 3.02581 3.18092 3.69272 3.97476 4.12985 4.24389 4.29272 4.37600 4.45310 4.60476 4.64793 4.77835 4.84227 4.88177 4.96748 5.01126 5.16280 5.17201 5.29337 5.36607 5.49191 5.58640 5.65800 6.16063 6.32381 6.49521 6.71562 7.27997 8.82833 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.005594 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.984334 B = 5004.572481 C = 5771.601398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.113 3.887 3 N -0.616 5.616 4 C 0.139 3.861 5 C -0.018 4.018 6 C -0.529 4.529 7 H 0.040 0.960 8 C 0.013 3.987 9 N -0.947 5.947 10 Si 0.941 3.059 11 H -0.262 1.262 12 H -0.286 1.286 13 H -0.257 1.257 14 C 0.249 3.751 15 C -0.190 4.190 16 C -0.025 4.025 17 C -0.149 4.149 18 Cl -0.067 7.067 19 C 0.138 3.862 20 F -0.142 7.142 21 C -0.246 4.246 22 H 0.036 0.964 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.007 0.993 30 H 0.024 0.976 31 H 0.266 0.734 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.888 -11.488 -18.459 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.009 4.009 3 N -0.322 5.322 4 C 0.016 3.984 5 C -0.056 4.056 6 C -0.567 4.567 7 H 0.059 0.941 8 C -0.185 4.185 9 N -0.587 5.587 10 Si 0.765 3.235 11 H -0.187 1.187 12 H -0.212 1.212 13 H -0.181 1.181 14 C 0.143 3.857 15 C -0.213 4.213 16 C -0.044 4.044 17 C -0.178 4.178 18 Cl -0.038 7.038 19 C 0.118 3.882 20 F -0.121 7.121 21 C -0.270 4.270 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.107 0.893 25 H 0.123 0.877 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.025 0.975 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.186 0.814 33 H 0.190 0.810 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.826 -11.395 -18.245 21.589 hybrid contribution -0.533 1.284 0.467 1.467 sum 1.293 -10.111 -17.778 20.493 Atomic orbital electron populations 1.22313 0.96406 1.03004 1.01636 1.21727 0.94172 0.80531 1.04460 1.47127 1.68696 1.13992 1.02376 1.21349 0.97167 0.96026 0.83813 1.19870 0.96017 0.95436 0.94293 1.21350 0.98445 1.30697 1.06255 0.94132 1.25854 1.02906 0.94632 0.95082 1.70043 1.34963 1.34529 1.19190 0.85792 0.79818 0.77948 0.79914 1.18694 1.21174 1.18095 1.17843 0.90458 0.89924 0.87498 1.20981 1.08907 1.02529 0.88873 1.20968 0.93242 0.90247 0.99910 1.20730 1.15323 0.96556 0.85220 1.98334 1.95266 1.79438 1.30770 1.17287 0.98474 0.79243 0.93235 1.91477 1.86534 1.36703 1.97391 1.20666 1.12659 0.96608 0.97042 0.94452 0.92708 0.89253 0.87676 0.89664 0.91987 0.90239 0.97496 0.95746 0.92469 0.81441 0.81039 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.69 10.24 71.98 0.74 -2.96 16 2 C 0.11 2.27 5.92 86.38 0.51 2.78 16 3 N -0.62 -17.42 2.61 -697.28 -1.82 -19.23 16 4 C 0.14 5.00 5.13 86.38 0.44 5.45 16 5 C -0.02 -0.79 4.37 29.85 0.13 -0.66 16 6 C -0.53 -29.51 9.66 25.60 0.25 -29.26 16 7 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 8 C 0.01 0.74 5.47 84.66 0.46 1.20 16 9 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 10 Si 0.94 44.48 27.47 68.60 1.88 46.37 16 11 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 13 H -0.26 -11.70 6.54 99.48 0.65 -11.05 16 14 C 0.25 6.99 6.55 38.19 0.25 7.24 16 15 C -0.19 -3.95 9.21 22.40 0.21 -3.74 16 16 C -0.02 -0.49 9.82 22.26 0.22 -0.27 16 17 C -0.15 -3.88 6.33 22.38 0.14 -3.74 16 18 Cl -0.07 -1.62 28.61 -2.72 -0.08 -1.69 16 19 C 0.14 4.37 7.27 22.38 0.16 4.53 16 20 F -0.14 -4.88 16.83 44.97 0.76 -4.12 16 21 C -0.25 -8.08 9.18 22.44 0.21 -7.87 16 22 H 0.04 1.02 6.26 -2.39 -0.01 1.01 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.11 1.45 6.20 -2.39 -0.01 1.43 16 26 H 0.09 1.62 7.89 -2.39 -0.02 1.60 16 27 H 0.06 2.33 6.21 -2.39 -0.01 2.32 16 28 H 0.08 2.72 7.89 -2.39 -0.02 2.70 16 29 H 0.01 0.32 7.20 -2.39 -0.02 0.30 16 30 H 0.02 1.06 5.69 -2.39 -0.01 1.05 16 31 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.17 2.35 6.14 -2.91 -0.02 2.33 16 33 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.13 4.68 6.15 -2.91 -0.02 4.66 16 Total: -1.00 -65.77 299.65 5.82 -59.95 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.06 Total: 4.53 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 3.72 Total: -27.31 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -1.52 Total: -77.72 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.76 Total: -4.12 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.69 kcal Total: -65.77 5.82 -59.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440607904.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.044 kcal (2) G-P(sol) polarization free energy of solvation -65.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds