Wall clock time and date at job start Mon Mar 30 2020 01:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47255 * 2 1 4 4 C 1.46899 * 111.00179 * 165.12285 * 3 2 1 5 5 C 1.52999 * 109.47207 * 199.68007 * 4 3 2 6 6 C 1.50705 * 109.47093 * 178.76281 * 5 4 3 7 7 H 1.08003 * 119.99865 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99858 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99882 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00212 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47348 * 89.99753 * 10 8 6 12 12 H 1.48501 * 109.46917 * 209.99999 * 10 8 6 13 13 H 1.48503 * 109.46760 * 329.99681 * 10 8 6 14 14 C 1.39919 * 111.00184 * 289.07585 * 3 2 1 15 15 C 1.38814 * 120.06432 * 295.76971 * 14 3 2 16 16 C 1.38159 * 119.96137 * 179.76318 * 15 14 3 17 17 C 1.38373 * 120.09523 * 0.50894 * 16 15 14 18 18 Cl 1.73602 * 119.93260 * 179.76364 * 17 16 15 19 19 C 1.38381 * 120.13760 * 359.74694 * 17 16 15 20 20 C 1.38283 * 120.03228 * 359.97438 * 19 17 16 21 21 F 1.35107 * 120.04619 * 179.97438 * 20 19 17 22 22 H 1.09000 * 109.46917 * 305.18845 * 1 2 3 23 23 H 1.08995 * 109.46817 * 65.18615 * 1 2 3 24 24 H 1.09002 * 109.47231 * 185.18699 * 1 2 3 25 25 H 1.09007 * 109.46886 * 239.99785 * 2 1 3 26 26 H 1.09001 * 109.47458 * 120.00274 * 2 1 3 27 27 H 1.09005 * 109.47395 * 79.67880 * 4 3 2 28 28 H 1.08994 * 109.47126 * 319.68236 * 4 3 2 29 29 H 1.09007 * 109.47190 * 298.75774 * 5 4 3 30 30 H 1.08991 * 109.47156 * 58.76252 * 5 4 3 31 31 H 0.96996 * 119.99836 * 180.02562 * 9 8 6 32 32 H 1.07998 * 120.02450 * 0.02562 * 15 14 3 33 33 H 1.07997 * 119.95817 * 180.25473 * 16 15 14 34 34 H 1.07999 * 119.98309 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4448 1.4395 0.3521 5 6 3.8012 2.8523 0.8189 6 6 5.2561 2.9005 1.2089 7 1 5.8655 2.0121 1.1320 8 6 5.8088 4.0783 1.6649 9 7 7.0784 4.1203 2.0058 10 14 4.7543 5.6143 1.8000 11 1 4.1350 5.6726 3.1484 12 1 5.6013 6.8161 1.5919 13 1 3.6882 5.5751 0.7669 14 6 1.7844 2.0000 -1.2345 15 6 2.4112 1.5256 -2.3786 16 6 2.1735 2.1315 -3.5973 17 6 1.3196 3.2173 -3.6775 18 17 1.0287 3.9793 -5.2100 19 6 0.6967 3.6970 -2.5387 20 6 0.9262 3.0911 -1.3170 21 9 0.3186 3.5595 -0.2049 22 1 -0.3633 0.5922 0.8399 23 1 -0.3633 0.4313 -0.9328 24 1 -0.3634 -1.0235 0.0929 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 4.0449 1.1831 -0.5210 28 1 3.6484 0.7298 1.1539 29 1 3.6184 3.5593 0.0095 30 1 3.1856 3.1170 1.6785 31 1 7.4672 4.9488 2.3270 32 1 3.0810 0.6806 -2.3169 33 1 2.6580 1.7597 -4.4880 34 1 0.0304 4.5444 -2.6042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440623984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:06 Heat of formation + Delta-G solvation = -43.080927 kcal Electronic energy + Delta-G solvation = -18789.278704 eV Core-core repulsion = 15661.666609 eV Total energy + Delta-G solvation = -3127.612095 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.84797 -40.96425 -38.47497 -37.13623 -35.28640 -33.02811 -31.90980 -31.51796 -29.51065 -26.16098 -24.74558 -23.69108 -22.46123 -21.61918 -19.12482 -18.91651 -17.80344 -17.34565 -16.94227 -16.37128 -16.24496 -15.88826 -15.38516 -15.04329 -14.93748 -14.62411 -14.50185 -14.17998 -13.79075 -13.35898 -13.21770 -13.05855 -12.78590 -12.58948 -12.30603 -12.07634 -12.05333 -11.91219 -11.79082 -11.57714 -11.43402 -10.79433 -10.04864 -9.59242 -9.46301 -8.32831 -6.35631 -0.13649 0.02372 0.95530 1.31357 1.32772 1.45398 2.31371 2.32402 2.71200 3.03114 3.24928 3.64856 3.92333 3.96063 4.12061 4.24625 4.34591 4.39729 4.53727 4.58605 4.63517 4.85940 4.90839 4.94375 4.98702 5.03488 5.14601 5.22047 5.34324 5.41268 5.50739 5.59916 6.01063 6.21267 6.33902 6.71423 7.29486 8.83362 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.015413 B = 0.006629 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.268090 B = 4222.711454 C = 5064.236855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 N -0.522 5.522 4 C 0.085 3.915 5 C 0.004 3.996 6 C -0.526 4.526 7 H 0.043 0.957 8 C 0.015 3.985 9 N -0.945 5.945 10 Si 0.939 3.061 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.260 1.260 14 C 0.066 3.934 15 C -0.112 4.112 16 C -0.102 4.102 17 C -0.019 4.019 18 Cl -0.050 7.050 19 C -0.146 4.146 20 C 0.108 3.892 21 F -0.136 7.136 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.004 0.996 30 H 0.012 0.988 31 H 0.267 0.733 32 H 0.153 0.847 33 H 0.165 0.835 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.623 -5.845 -13.020 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.073 4.073 3 N -0.244 5.244 4 C -0.041 4.041 5 C -0.034 4.034 6 C -0.565 4.565 7 H 0.061 0.939 8 C -0.183 4.183 9 N -0.585 5.585 10 Si 0.763 3.237 11 H -0.193 1.193 12 H -0.205 1.205 13 H -0.184 1.184 14 C -0.030 4.030 15 C -0.132 4.132 16 C -0.122 4.122 17 C -0.046 4.046 18 Cl -0.021 7.021 19 C -0.166 4.166 20 C 0.087 3.913 21 F -0.115 7.115 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.022 0.978 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.171 0.829 33 H 0.183 0.817 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.802 -5.421 -12.658 20.960 hybrid contribution 0.405 0.684 0.006 0.795 sum -15.397 -4.738 -12.652 20.484 Atomic orbital electron populations 1.21715 0.93967 1.02616 1.01450 1.22322 0.96853 0.85899 1.02254 1.59679 1.19165 1.19141 1.26397 1.22030 0.84141 0.98362 0.99543 1.19349 0.94069 0.94387 0.95592 1.21343 0.95160 0.96835 1.43139 0.93910 1.25796 0.95908 1.02109 0.94462 1.70030 1.13829 1.28529 1.46143 0.85821 0.79177 0.79077 0.79586 1.19276 1.20522 1.18374 1.19105 0.97343 0.95680 0.90830 1.21673 0.99119 1.01032 0.91425 1.21237 0.97350 0.94430 0.99141 1.20632 1.00109 0.96684 0.87179 1.98376 1.95160 1.80857 1.27681 1.21053 1.03372 1.02514 0.89642 1.17659 0.96105 0.94773 0.82751 1.91478 1.81130 1.87548 1.51312 0.93067 0.93732 0.89745 0.92859 0.89585 0.94080 0.90521 0.97790 0.96965 0.92405 0.82932 0.81705 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.88 71.98 0.71 -2.35 16 2 C 0.05 1.29 5.60 86.30 0.48 1.77 16 3 N -0.52 -17.15 4.24 -694.97 -2.94 -20.10 16 4 C 0.08 3.28 4.85 86.30 0.42 3.70 16 5 C 0.00 0.19 4.13 29.85 0.12 0.32 16 6 C -0.53 -30.45 9.66 25.60 0.25 -30.21 16 7 H 0.04 2.65 7.99 -2.91 -0.02 2.63 16 8 C 0.01 0.88 5.47 84.65 0.46 1.34 16 9 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 10 Si 0.94 46.35 27.47 68.60 1.88 48.24 16 11 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 13 H -0.26 -12.51 6.54 99.48 0.65 -11.86 16 14 C 0.07 2.04 3.29 38.19 0.13 2.16 16 15 C -0.11 -2.87 8.23 22.39 0.18 -2.68 16 16 C -0.10 -2.25 9.82 22.28 0.22 -2.03 16 17 C -0.02 -0.45 6.32 22.34 0.14 -0.30 16 18 Cl -0.05 -0.99 28.95 -2.72 -0.08 -1.07 16 19 C -0.15 -3.80 9.80 22.31 0.22 -3.59 16 20 C 0.11 3.40 7.31 22.48 0.16 3.57 16 21 F -0.14 -4.81 17.08 44.97 0.77 -4.04 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.04 1.00 7.70 -2.39 -0.02 0.99 16 24 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.14 7.07 -2.38 -0.02 1.13 16 26 H 0.09 2.03 7.71 -2.39 -0.02 2.02 16 27 H 0.04 1.53 6.69 -2.38 -0.02 1.52 16 28 H 0.08 2.90 7.66 -2.39 -0.02 2.88 16 29 H 0.00 0.19 6.81 -2.38 -0.02 0.17 16 30 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 31 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.15 3.40 7.07 -2.91 -0.02 3.38 16 33 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -66.41 303.79 4.47 -61.94 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 1.04 Total: 2.40 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 3.50 Total: -28.31 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.65 Total: -79.15 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.77 Total: -4.04 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.88 Total: 48.24 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -66.41 4.47 -61.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440623984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.855 kcal (2) G-P(sol) polarization free energy of solvation -66.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds