Wall clock time and date at job start Mon Mar 30 2020 00:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86796 * 120.00037 * 2 1 4 4 H 1.48497 * 109.47470 * 240.00144 * 3 2 1 5 5 H 1.48507 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47082 * 119.99791 * 3 2 1 7 7 C 1.39858 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99973 * 197.96409 * 7 2 1 9 9 C 1.41130 * 120.00466 * 17.97393 * 7 2 1 10 10 C 1.40903 * 120.15141 * 204.60369 * 9 7 2 11 11 C 1.36346 * 119.85690 * 179.73716 * 10 9 7 12 12 C 1.39556 * 120.16934 * 0.53246 * 11 10 9 13 13 N 1.38897 * 119.84929 * 179.76273 * 12 11 10 14 14 C 1.46499 * 119.99750 * 359.72144 * 13 12 11 15 15 C 1.52996 * 109.47193 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47497 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47526 * 179.97438 * 16 15 14 18 18 F 1.39895 * 109.47430 * 180.02562 * 17 16 15 19 19 C 1.39665 * 120.30456 * 359.48189 * 12 11 10 20 20 Cl 1.73600 * 119.93147 * 180.25515 * 19 12 11 21 21 C 1.36434 * 120.14127 * 0.23527 * 19 12 11 22 22 H 0.97004 * 120.00281 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.07266 * 0.02562 * 10 9 7 24 24 H 1.07993 * 119.92037 * 180.29103 * 11 10 9 25 25 H 0.96999 * 120.00294 * 179.72101 * 13 12 11 26 26 H 1.09000 * 109.47239 * 59.99950 * 14 13 12 27 27 H 1.09003 * 109.47298 * 300.00025 * 14 13 12 28 28 H 1.09007 * 109.47298 * 299.99995 * 15 14 13 29 29 H 1.09000 * 109.47255 * 59.99731 * 15 14 13 30 30 H 1.09003 * 109.47111 * 299.99869 * 16 15 14 31 31 H 1.09000 * 109.47123 * 59.99607 * 16 15 14 32 32 H 1.09003 * 109.46877 * 300.00084 * 17 16 15 33 33 H 1.08999 * 109.46661 * 59.99729 * 17 16 15 34 34 H 1.08005 * 120.09132 * 179.97438 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7465 0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0083 -1.2112 0.0005 8 1 3.0488 -1.2339 0.2890 9 6 1.3543 -2.4038 -0.3761 10 6 1.8268 -3.6472 0.0888 11 6 1.1872 -4.7953 -0.2744 12 6 0.0735 -4.7422 -1.1138 13 7 -0.5700 -5.9162 -1.4836 14 6 -0.0756 -7.2068 -0.9976 15 6 -0.9558 -8.3304 -1.5486 16 6 -0.4399 -9.6782 -1.0406 17 6 -1.3205 -10.8018 -1.5912 18 9 -0.8492 -12.0342 -1.1262 19 6 -0.4005 -3.5136 -1.5789 20 17 -1.7907 -3.4583 -2.6172 21 6 0.2264 -2.3566 -1.2187 22 1 -0.4851 0.8401 -0.0004 23 1 2.6909 -3.6905 0.7352 24 1 1.5456 -5.7484 0.0851 25 1 -1.3467 -5.8816 -2.0636 26 1 -0.1072 -7.2211 0.0918 27 1 0.9512 -7.3524 -1.3333 28 1 -1.9828 -8.1851 -1.2134 29 1 -0.9238 -8.3159 -2.6381 30 1 0.5871 -9.8238 -1.3756 31 1 -0.4722 -9.6924 0.0488 32 1 -2.3474 -10.6560 -1.2559 33 1 -1.2886 -10.7877 -2.6806 34 1 -0.1406 -1.4069 -1.5792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453122891.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:09 Heat of formation + Delta-G solvation = -73.995401 kcal Electronic energy + Delta-G solvation = -17588.869029 eV Core-core repulsion = 14459.916381 eV Total energy + Delta-G solvation = -3128.952648 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.53527 -39.97481 -37.50180 -37.09706 -35.57163 -34.17510 -31.31131 -30.78280 -28.81440 -26.14439 -24.42666 -22.94590 -22.09167 -21.88730 -19.23297 -17.81054 -17.37276 -17.31174 -16.56693 -16.51045 -15.98024 -15.95251 -15.63249 -14.67937 -14.59076 -14.41257 -14.25071 -13.70738 -13.50305 -12.98038 -12.81239 -12.80424 -12.63589 -12.42019 -12.27944 -12.01518 -11.86308 -11.72288 -11.49690 -11.45829 -11.36494 -11.06050 -10.35860 -9.33277 -8.59093 -8.22161 -6.06443 0.90650 1.08258 1.41915 1.51869 1.55799 1.58192 2.26476 2.75525 2.80814 3.66149 3.71493 3.89107 4.02266 4.26982 4.28481 4.33631 4.39937 4.70292 4.72342 4.79780 4.85105 5.01051 5.08221 5.13610 5.25167 5.31973 5.34739 5.48816 5.58166 5.77553 6.03755 6.26727 6.57350 6.74109 7.01842 7.02456 7.16035 8.43810 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035499 B = 0.003604 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.566369 B = 7768.112516 C = 8449.872303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.033 3.967 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.048 3.952 10 C -0.187 4.187 11 C -0.152 4.152 12 C 0.115 3.885 13 N -0.753 5.753 14 C 0.132 3.868 15 C -0.117 4.117 16 C -0.144 4.144 17 C 0.057 3.943 18 F -0.239 7.239 19 C -0.082 4.082 20 Cl -0.101 7.101 21 C -0.139 4.139 22 H 0.284 0.716 23 H 0.108 0.892 24 H 0.129 0.871 25 H 0.394 0.606 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 -13.401 -3.453 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.531 4.531 8 H 0.094 0.906 9 C 0.044 3.956 10 C -0.208 4.208 11 C -0.175 4.175 12 C 0.014 3.986 13 N -0.389 5.389 14 C 0.007 3.993 15 C -0.155 4.155 16 C -0.182 4.182 17 C 0.003 3.997 18 F -0.220 7.220 19 C -0.113 4.113 20 Cl -0.073 7.073 21 C -0.160 4.160 22 H 0.095 0.905 23 H 0.126 0.874 24 H 0.146 0.854 25 H 0.230 0.770 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.058 -13.427 -3.421 14.189 hybrid contribution -0.113 1.015 -0.129 1.030 sum -3.171 -12.411 -3.550 13.293 Atomic orbital electron populations 1.69897 1.08797 1.30151 1.37407 1.26631 0.95414 1.04213 0.91709 0.85339 0.78763 0.76218 0.79900 1.18726 1.19682 1.18437 1.19576 0.98321 0.92356 1.42807 0.90600 1.17693 0.92686 0.93453 0.91748 1.20895 1.03034 0.92473 1.04350 1.20126 0.96920 0.98295 1.02149 1.17168 0.95797 0.85103 1.00539 1.44084 1.34835 1.02391 1.57579 1.21230 0.97736 0.82163 0.98132 1.21539 0.99803 0.92401 1.01743 1.22000 1.00661 0.93346 1.02221 1.22178 0.98901 0.77977 1.00673 1.92727 1.90928 1.47169 1.91183 1.20164 0.93668 0.94316 1.03104 1.98219 1.43248 1.98627 1.67183 1.20767 0.99135 0.95696 1.00405 0.90549 0.87413 0.85366 0.77043 0.93317 0.93032 0.90495 0.90303 0.90538 0.90678 0.89294 0.89186 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.57 10.96 21.81 0.24 -44.34 16 2 C 0.03 1.71 5.13 85.22 0.44 2.15 16 3 Si 0.98 38.94 29.60 68.60 2.03 40.97 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.50 -26.92 9.03 23.37 0.21 -26.70 16 8 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 9 C 0.05 2.54 5.57 -21.27 -0.12 2.42 16 10 C -0.19 -8.85 9.74 22.48 0.22 -8.63 16 11 C -0.15 -6.34 9.23 22.15 0.20 -6.14 16 12 C 0.11 4.75 6.67 38.69 0.26 5.01 16 13 N -0.75 -24.13 5.66 -338.89 -1.92 -26.05 16 14 C 0.13 3.19 4.89 86.38 0.42 3.62 16 15 C -0.12 -1.94 5.33 30.59 0.16 -1.77 16 16 C -0.14 -2.08 5.67 30.60 0.17 -1.91 16 17 C 0.06 0.75 7.55 71.98 0.54 1.29 16 18 F -0.24 -4.68 17.36 44.97 0.78 -3.90 16 19 C -0.08 -3.78 6.30 22.19 0.14 -3.64 16 20 Cl -0.10 -3.94 27.55 -2.72 -0.07 -4.01 16 21 C -0.14 -7.32 8.40 22.49 0.19 -7.13 16 22 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 23 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 24 H 0.13 4.48 6.68 -2.91 -0.02 4.46 16 25 H 0.39 11.87 7.11 -92.71 -0.66 11.22 16 26 H 0.05 1.22 7.92 -2.39 -0.02 1.20 16 27 H 0.05 1.26 7.94 -2.39 -0.02 1.24 16 28 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 6.12 6.16 -2.91 -0.02 6.10 16 Total: -1.00 -59.35 304.88 4.35 -55.00 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.45 Total: 23.77 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 2.84 Total: -41.45 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -1.68 Total: -70.38 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.78 Total: -3.90 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 17 Polarization: -3.94 SS G_CDS: -0.07 Total: -4.01 kcal Total: -59.35 4.35 -55.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453122891.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.000 kcal (2) G-P(sol) polarization free energy of solvation -59.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds