Wall clock time and date at job start Mon Mar 30 2020 01:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47388 * 2 1 4 4 H 1.09003 * 109.46723 * 54.99161 * 3 2 1 5 5 F 1.39903 * 109.46840 * 294.99584 * 3 2 1 6 6 C 1.52999 * 109.47274 * 174.99743 * 3 2 1 7 7 N 1.46497 * 109.46832 * 179.97438 * 6 3 2 8 8 C 1.38906 * 119.99511 * 179.97438 * 7 6 3 9 9 C 1.39542 * 119.84825 * 0.02562 * 8 7 6 10 10 C 1.36342 * 120.17074 * 180.24957 * 9 8 7 11 11 C 1.40908 * 119.85574 * 359.47953 * 10 9 8 12 12 C 1.41133 * 120.15457 * 180.27328 * 11 10 9 13 13 H 1.07991 * 120.00427 * 204.76574 * 12 11 10 14 14 C 1.39860 * 119.99527 * 24.76181 * 12 11 10 15 15 N 1.30905 * 120.00293 * 17.83341 * 14 12 11 16 16 Si 1.86801 * 120.00052 * 197.82993 * 14 12 11 17 17 H 1.48499 * 109.47241 * 59.99830 * 16 14 12 18 18 H 1.48502 * 109.47424 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47052 * 299.99984 * 16 14 12 20 20 C 1.40862 * 119.69876 * 0.51895 * 11 10 9 21 21 C 1.36435 * 119.82583 * 359.72909 * 20 11 10 22 22 Cl 1.73605 * 119.93052 * 179.97438 * 21 20 11 23 23 H 1.09000 * 109.46929 * 60.00251 * 1 2 3 24 24 H 1.08999 * 109.47351 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47352 * 300.00428 * 1 2 3 26 26 H 1.08996 * 109.47352 * 239.99572 * 2 1 3 27 27 H 1.09000 * 109.46929 * 119.99749 * 2 1 3 28 28 H 1.09003 * 109.46993 * 59.99869 * 6 3 2 29 29 H 1.08997 * 109.47012 * 299.99869 * 6 3 2 30 30 H 0.96993 * 120.00500 * 0.02562 * 7 6 3 31 31 H 1.08000 * 119.91609 * 359.97438 * 9 8 7 32 32 H 1.08004 * 120.07486 * 179.72320 * 10 9 8 33 33 H 0.97000 * 120.00019 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.09231 * 179.75755 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 9 1.6700 2.0679 -1.1955 6 6 3.5649 1.4443 0.1258 7 7 4.0532 2.8254 0.1252 8 6 5.4145 3.0807 0.2305 9 6 6.3141 2.0192 0.3362 10 6 7.6512 2.2624 0.4450 11 6 8.1256 3.5892 0.4396 12 6 9.5089 3.8479 0.5461 13 1 9.8528 4.7945 0.9360 14 6 10.4344 2.8784 0.1466 15 7 10.0584 1.8965 -0.6333 16 14 12.2071 2.9845 0.7259 17 1 12.2473 2.9292 2.2093 18 1 12.9797 1.8463 0.1665 19 1 12.8038 4.2628 0.2619 20 6 7.2125 4.6564 0.3326 21 6 5.8766 4.3988 0.2295 22 17 4.7488 5.7120 0.0982 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9995 0.9052 -0.7160 29 1 3.8531 0.9570 1.0572 30 1 3.4260 3.5616 0.0520 31 1 5.9498 1.0025 0.3362 32 1 8.3457 1.4397 0.5312 33 1 10.7004 1.2243 -0.9106 34 1 7.5688 5.6760 0.3318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453123552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:22 Heat of formation + Delta-G solvation = -56.325773 kcal Electronic energy + Delta-G solvation = -18024.499682 eV Core-core repulsion = 14896.313247 eV Total energy + Delta-G solvation = -3128.186435 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.59309 -38.22947 -35.71961 -35.47534 -34.11628 -32.86166 -29.69822 -29.41816 -27.66828 -24.67791 -23.21869 -21.71548 -20.80383 -20.18134 -17.42023 -16.78205 -16.64497 -15.57782 -15.18578 -14.94449 -14.39474 -14.08622 -13.87614 -13.40174 -13.00255 -12.94135 -12.79189 -12.38471 -12.20233 -12.09933 -11.76866 -11.29053 -11.26648 -11.11424 -10.78327 -10.71582 -10.66358 -10.35772 -10.25216 -9.87661 -9.52403 -9.35878 -8.67871 -7.55501 -6.76706 -6.54516 -4.18659 2.78375 2.79234 3.08987 3.11398 3.21154 3.26119 3.96441 4.01521 4.54076 4.56861 4.60696 4.78564 4.84619 5.19577 5.29224 5.47659 5.60295 5.69523 5.74379 5.84896 6.00249 6.07612 6.15397 6.57963 6.74890 6.94051 7.18885 7.19734 7.34863 7.63191 7.95301 8.02764 8.24956 8.52725 8.59706 8.88393 8.93176 10.23743 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.004511 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.519690 B = 6205.503913 C = 7171.533062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.149 4.149 3 C 0.082 3.918 4 H 0.084 0.916 5 F -0.210 7.210 6 C 0.112 3.888 7 N -0.757 5.757 8 C 0.103 3.897 9 C -0.155 4.155 10 C -0.118 4.118 11 C 0.086 3.914 12 C -0.463 4.463 13 H 0.076 0.924 14 C 0.076 3.924 15 N -0.803 5.803 16 Si 0.907 3.093 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.266 1.266 20 C -0.183 4.183 21 C -0.058 4.058 22 Cl -0.126 7.126 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.391 0.609 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.280 0.720 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.588 -4.080 2.192 12.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.187 4.187 3 C 0.046 3.954 4 H 0.102 0.898 5 F -0.191 7.191 6 C -0.014 4.014 7 N -0.394 5.394 8 C 0.004 3.996 9 C -0.177 4.177 10 C -0.138 4.138 11 C 0.083 3.917 12 C -0.493 4.493 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.429 5.429 16 Si 0.732 3.268 17 H -0.189 1.189 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.204 4.204 21 C -0.088 4.088 22 Cl -0.098 7.098 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.226 0.774 31 H 0.116 0.884 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.576 -4.353 2.024 12.532 hybrid contribution 0.507 0.390 0.005 0.640 sum -11.068 -3.963 2.028 11.930 Atomic orbital electron populations 1.21755 0.94874 1.02086 1.02353 1.22070 0.97138 0.95353 1.04123 1.21872 0.95502 0.93782 0.84264 0.89778 1.92822 1.92834 1.84249 1.49160 1.21639 0.91367 0.86498 1.01879 1.43797 1.04443 1.04910 1.86258 1.16998 0.83318 0.91272 1.07984 1.20044 0.93512 0.95249 1.08893 1.21050 0.93077 0.97877 1.01818 1.17381 0.92843 0.90339 0.91173 1.19340 0.90370 1.01520 1.38094 0.90547 1.25824 1.01185 0.94382 0.92667 1.69829 1.37074 1.11516 1.24479 0.86384 0.81611 0.78643 0.80158 1.18927 1.20462 1.19114 1.20486 0.90093 0.98903 1.10955 1.19840 0.89803 0.84735 1.14384 1.98233 1.63829 1.50372 1.97354 0.92163 0.92199 0.92532 0.90441 0.89865 0.92145 0.91628 0.77401 0.88377 0.85775 0.90957 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.83 37.16 0.37 -0.90 16 2 C -0.15 -1.38 5.70 -26.73 -0.15 -1.53 16 3 C 0.08 0.98 3.40 -26.73 -0.09 0.89 16 4 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 5 F -0.21 -3.06 16.62 2.25 0.04 -3.02 16 6 C 0.11 1.63 4.65 -4.04 -0.02 1.61 16 7 N -0.76 -13.70 5.59 -58.47 -0.33 -14.03 16 8 C 0.10 2.23 6.67 -83.64 -0.56 1.67 16 9 C -0.15 -3.47 9.23 -39.78 -0.37 -3.84 16 10 C -0.12 -2.96 8.63 -39.25 -0.34 -3.29 16 11 C 0.09 2.24 5.57 -106.80 -0.60 1.65 16 12 C -0.46 -12.10 9.03 -37.88 -0.34 -12.44 16 13 H 0.08 1.93 7.90 -52.49 -0.41 1.51 16 14 C 0.08 1.88 5.13 -17.34 -0.09 1.79 16 15 N -0.80 -20.42 10.96 55.54 0.61 -19.81 16 16 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 C -0.18 -4.48 9.50 -39.24 -0.37 -4.86 16 21 C -0.06 -1.30 6.30 -39.70 -0.25 -1.55 16 22 Cl -0.13 -2.44 27.55 -51.86 -1.43 -3.87 16 23 H 0.06 0.54 7.94 -51.93 -0.41 0.13 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 29 H 0.07 0.89 7.93 -51.93 -0.41 0.48 16 30 H 0.39 6.90 7.05 -40.82 -0.29 6.61 16 31 H 0.10 1.95 6.68 -52.49 -0.35 1.60 16 32 H 0.12 3.18 6.17 -52.48 -0.32 2.86 16 33 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 34 H 0.10 2.46 8.06 -52.48 -0.42 2.03 16 LS Contribution 303.94 15.07 4.58 4.58 Total: -1.00 -26.99 303.94 -8.65 -35.64 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.28 Total: 7.81 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -2.81 Total: -20.80 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.28 Total: -33.84 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.04 Total: -3.02 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -1.43 Total: -3.87 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.99 -8.65 -35.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453123552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.683 kcal (2) G-P(sol) polarization free energy of solvation -26.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds