Wall clock time and date at job start Mon Mar 30 2020 01:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47388 * 2 1 4 4 H 1.09003 * 109.46723 * 54.99161 * 3 2 1 5 5 F 1.39903 * 109.46840 * 294.99584 * 3 2 1 6 6 C 1.52999 * 109.47274 * 174.99743 * 3 2 1 7 7 N 1.46497 * 109.46832 * 179.97438 * 6 3 2 8 8 C 1.38906 * 119.99511 * 179.97438 * 7 6 3 9 9 C 1.39542 * 119.84825 * 0.02562 * 8 7 6 10 10 C 1.36342 * 120.17074 * 180.24957 * 9 8 7 11 11 C 1.40908 * 119.85574 * 359.47953 * 10 9 8 12 12 C 1.41133 * 120.15457 * 180.27328 * 11 10 9 13 13 H 1.07991 * 120.00427 * 204.76574 * 12 11 10 14 14 C 1.39860 * 119.99527 * 24.76181 * 12 11 10 15 15 N 1.30905 * 120.00293 * 17.83341 * 14 12 11 16 16 Si 1.86801 * 120.00052 * 197.82993 * 14 12 11 17 17 H 1.48499 * 109.47241 * 59.99830 * 16 14 12 18 18 H 1.48502 * 109.47424 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47052 * 299.99984 * 16 14 12 20 20 C 1.40862 * 119.69876 * 0.51895 * 11 10 9 21 21 C 1.36435 * 119.82583 * 359.72909 * 20 11 10 22 22 Cl 1.73605 * 119.93052 * 179.97438 * 21 20 11 23 23 H 1.09000 * 109.46929 * 60.00251 * 1 2 3 24 24 H 1.08999 * 109.47351 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47352 * 300.00428 * 1 2 3 26 26 H 1.08996 * 109.47352 * 239.99572 * 2 1 3 27 27 H 1.09000 * 109.46929 * 119.99749 * 2 1 3 28 28 H 1.09003 * 109.46993 * 59.99869 * 6 3 2 29 29 H 1.08997 * 109.47012 * 299.99869 * 6 3 2 30 30 H 0.96993 * 120.00500 * 0.02562 * 7 6 3 31 31 H 1.08000 * 119.91609 * 359.97438 * 9 8 7 32 32 H 1.08004 * 120.07486 * 179.72320 * 10 9 8 33 33 H 0.97000 * 120.00019 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.09231 * 179.75755 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 9 1.6700 2.0679 -1.1955 6 6 3.5649 1.4443 0.1258 7 7 4.0532 2.8254 0.1252 8 6 5.4145 3.0807 0.2305 9 6 6.3141 2.0192 0.3362 10 6 7.6512 2.2624 0.4450 11 6 8.1256 3.5892 0.4396 12 6 9.5089 3.8479 0.5461 13 1 9.8528 4.7945 0.9360 14 6 10.4344 2.8784 0.1466 15 7 10.0584 1.8965 -0.6333 16 14 12.2071 2.9845 0.7259 17 1 12.2473 2.9292 2.2093 18 1 12.9797 1.8463 0.1665 19 1 12.8038 4.2628 0.2619 20 6 7.2125 4.6564 0.3326 21 6 5.8766 4.3988 0.2295 22 17 4.7488 5.7120 0.0982 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9995 0.9052 -0.7160 29 1 3.8531 0.9570 1.0572 30 1 3.4260 3.5616 0.0520 31 1 5.9498 1.0025 0.3362 32 1 8.3457 1.4397 0.5312 33 1 10.7004 1.2243 -0.9106 34 1 7.5688 5.6760 0.3318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453123552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:22 Heat of formation + Delta-G solvation = -69.441558 kcal Electronic energy + Delta-G solvation = -18025.068425 eV Core-core repulsion = 14896.313247 eV Total energy + Delta-G solvation = -3128.755178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.64899 -39.97205 -37.20738 -37.09613 -35.39755 -34.36894 -31.31136 -31.11967 -29.09457 -26.28072 -24.51752 -23.10291 -22.09270 -21.83912 -19.28555 -18.20162 -17.73560 -16.97544 -16.84208 -16.13721 -16.04402 -15.42695 -14.97823 -14.72232 -14.57379 -14.51318 -14.05367 -13.84020 -13.55746 -13.49846 -13.03294 -12.87249 -12.75671 -12.43311 -12.07043 -11.99447 -11.95551 -11.75798 -11.64363 -11.53676 -11.31854 -11.10794 -10.41919 -9.38145 -8.60026 -8.27749 -6.09211 0.91483 1.01706 1.42461 1.50065 1.53074 1.57759 2.26954 2.67909 2.75227 3.50897 3.68950 3.72246 3.90818 3.95713 4.26565 4.38014 4.50226 4.70099 4.79574 4.83954 4.88640 4.93805 5.07532 5.09413 5.27598 5.32906 5.36550 5.41340 5.49320 5.79118 6.05687 6.18045 6.52890 6.70481 6.96274 6.99414 7.08794 8.42255 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.004511 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.519690 B = 6205.503913 C = 7171.533062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.144 4.144 3 C 0.084 3.916 4 H 0.099 0.901 5 F -0.226 7.226 6 C 0.105 3.895 7 N -0.753 5.753 8 C 0.116 3.884 9 C -0.158 4.158 10 C -0.133 4.133 11 C 0.054 3.946 12 C -0.501 4.501 13 H 0.071 0.929 14 C 0.038 3.962 15 N -0.833 5.833 16 Si 0.978 3.022 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.264 1.264 20 C -0.194 4.194 21 C -0.073 4.073 22 Cl -0.098 7.098 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.394 0.606 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.286 0.714 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.694 -4.855 2.733 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.182 4.182 3 C 0.048 3.952 4 H 0.117 0.883 5 F -0.207 7.207 6 C -0.020 4.020 7 N -0.389 5.389 8 C 0.015 3.985 9 C -0.180 4.180 10 C -0.153 4.153 11 C 0.050 3.950 12 C -0.532 4.532 13 H 0.090 0.910 14 C -0.176 4.176 15 N -0.460 5.460 16 Si 0.800 3.200 17 H -0.186 1.186 18 H -0.193 1.193 19 H -0.188 1.188 20 C -0.215 4.215 21 C -0.104 4.104 22 Cl -0.069 7.069 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.230 0.770 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.733 -5.133 2.559 13.965 hybrid contribution 0.642 0.659 -0.185 0.939 sum -12.090 -4.474 2.374 13.109 Atomic orbital electron populations 1.21755 0.94013 1.03018 1.02179 1.22072 0.97810 0.93407 1.04942 1.22025 0.93591 0.95681 0.83946 0.88267 1.92793 1.92834 1.84773 1.50341 1.21899 0.93303 0.84344 1.02420 1.43942 1.02961 1.06829 1.85122 1.17128 0.84947 0.90792 1.05600 1.20242 0.92693 0.96775 1.08269 1.21016 0.94066 0.97182 1.03036 1.17680 0.93466 0.91303 0.92531 1.19568 0.91264 1.02304 1.40023 0.91033 1.26595 1.05172 0.93680 0.92150 1.69877 1.38707 1.12252 1.25206 0.85313 0.76295 0.78847 0.79590 1.18571 1.19321 1.18845 1.20564 0.91017 0.98565 1.11389 1.19941 0.89950 0.86226 1.14279 1.98230 1.62462 1.49023 1.97219 0.93307 0.90759 0.91762 0.90740 0.87986 0.92756 0.89954 0.77041 0.85865 0.87068 0.90327 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.83 71.98 0.71 -1.40 16 2 C -0.14 -2.26 5.70 30.59 0.17 -2.08 16 3 C 0.08 1.78 3.40 30.59 0.10 1.89 16 4 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 5 F -0.23 -6.19 16.62 44.97 0.75 -5.44 16 6 C 0.11 2.80 4.65 86.38 0.40 3.20 16 7 N -0.75 -25.78 5.59 -338.89 -1.89 -27.68 16 8 C 0.12 4.92 6.67 38.68 0.26 5.17 16 9 C -0.16 -6.98 9.23 22.14 0.20 -6.77 16 10 C -0.13 -6.78 8.63 22.48 0.19 -6.58 16 11 C 0.05 2.88 5.57 -21.27 -0.12 2.76 16 12 C -0.50 -27.07 9.03 23.37 0.21 -26.86 16 13 H 0.07 3.76 7.90 -2.92 -0.02 3.74 16 14 C 0.04 1.89 5.13 85.22 0.44 2.33 16 15 N -0.83 -43.22 10.96 21.81 0.24 -42.98 16 16 Si 0.98 38.34 29.59 68.60 2.03 40.37 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 20 C -0.19 -9.70 9.50 22.49 0.21 -9.48 16 21 C -0.07 -3.29 6.30 22.19 0.14 -3.15 16 22 Cl -0.10 -3.67 27.55 -2.72 -0.07 -3.74 16 23 H 0.05 0.79 7.94 -2.39 -0.02 0.77 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.54 7.93 -2.39 -0.02 1.53 16 29 H 0.08 1.97 7.93 -2.39 -0.02 1.95 16 30 H 0.39 13.07 7.05 -92.71 -0.65 12.42 16 31 H 0.12 4.71 6.68 -2.91 -0.02 4.69 16 32 H 0.11 5.88 6.17 -2.91 -0.02 5.86 16 33 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 34 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -58.45 303.94 4.44 -54.01 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.46 Total: 26.45 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 2.93 Total: -40.99 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -1.65 Total: -70.66 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.75 Total: -5.44 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Atomic # 17 Polarization: -3.67 SS G_CDS: -0.07 Total: -3.74 kcal Total: -58.45 4.44 -54.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453123552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.427 kcal (2) G-P(sol) polarization free energy of solvation -58.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds