Wall clock time and date at job start Mon Mar 30 2020 01:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47025 * 2 1 4 4 H 1.08997 * 109.47192 * 305.00185 * 3 2 1 5 5 F 1.39902 * 109.47113 * 64.99826 * 3 2 1 6 6 C 1.52996 * 109.46957 * 184.99471 * 3 2 1 7 7 N 1.46503 * 109.46951 * 179.97438 * 6 3 2 8 8 C 1.38904 * 119.99893 * 179.97438 * 7 6 3 9 9 C 1.39544 * 119.84861 * 359.73211 * 8 7 6 10 10 C 1.36345 * 120.17296 * 179.75831 * 9 8 7 11 11 C 1.40909 * 119.85105 * 0.53113 * 10 9 8 12 12 C 1.41132 * 120.14433 * 179.73972 * 11 10 9 13 13 H 1.08001 * 120.00473 * 24.60851 * 12 11 10 14 14 C 1.39863 * 119.99884 * 204.59755 * 12 11 10 15 15 N 1.30907 * 119.99718 * 17.97421 * 14 12 11 16 16 Si 1.86796 * 120.00199 * 197.97152 * 14 12 11 17 17 H 1.48497 * 109.47314 * 60.00466 * 16 14 12 18 18 H 1.48507 * 109.47027 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47116 * 300.00157 * 16 14 12 20 20 C 1.40860 * 119.69960 * 359.72119 * 11 10 9 21 21 C 1.36428 * 119.82687 * 359.97438 * 20 11 10 22 22 Cl 1.73603 * 119.92654 * 180.02562 * 21 20 11 23 23 H 1.08993 * 109.47483 * 300.00032 * 1 2 3 24 24 H 1.08999 * 109.47116 * 60.00446 * 1 2 3 25 25 H 1.09011 * 109.46954 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47483 * 239.99968 * 2 1 3 27 27 H 1.09001 * 109.46670 * 119.99830 * 2 1 3 28 28 H 1.09001 * 109.47551 * 299.99938 * 6 3 2 29 29 H 1.09005 * 109.47216 * 60.00434 * 6 3 2 30 30 H 0.96998 * 119.99980 * 0.02562 * 7 6 3 31 31 H 1.08011 * 119.91499 * 359.97438 * 9 8 7 32 32 H 1.08000 * 120.07446 * 180.25458 * 10 9 8 33 33 H 0.97000 * 119.99682 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.08120 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 9 1.6698 2.0680 1.1954 6 6 3.5648 1.4443 -0.1256 7 7 4.0530 2.8256 -0.1262 8 6 5.4144 3.0809 -0.2305 9 6 6.3146 2.0192 -0.3289 10 6 7.6519 2.2624 -0.4366 11 6 8.1257 3.5894 -0.4370 12 6 9.5091 3.8481 -0.5426 13 1 10.1602 3.1226 -1.0076 14 6 10.0368 5.0440 -0.0452 15 7 9.3503 5.7555 0.8127 16 14 11.7213 5.6258 -0.6051 17 1 11.7132 5.8221 -2.0770 18 1 12.0490 6.9103 0.0643 19 1 12.7410 4.6073 -0.2471 20 6 7.2123 4.6566 -0.3321 21 6 5.8763 4.3989 -0.2313 22 17 4.7483 5.7122 -0.1025 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.9994 0.9053 0.7163 29 1 3.8532 0.9570 -1.0570 30 1 3.4257 3.5618 -0.0530 31 1 5.9508 1.0023 -0.3233 32 1 8.3468 1.4396 -0.5168 33 1 9.7166 6.5847 1.1580 34 1 7.5686 5.6762 -0.3323 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453123553.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:24 Heat of formation + Delta-G solvation = -55.955743 kcal Electronic energy + Delta-G solvation = -18035.980255 eV Core-core repulsion = 14907.809866 eV Total energy + Delta-G solvation = -3128.170389 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.59740 -38.21865 -35.72895 -35.37153 -34.13697 -32.85269 -29.81500 -29.22563 -27.72136 -24.66405 -23.28667 -21.65686 -20.65676 -20.34054 -17.42099 -16.78168 -16.47944 -15.76593 -15.20643 -14.92523 -14.34286 -14.08828 -13.87551 -13.40496 -13.02060 -12.86128 -12.80082 -12.40647 -12.17977 -12.09586 -11.75883 -11.30498 -11.17787 -11.04398 -10.84449 -10.75339 -10.65513 -10.38646 -10.22452 -9.68643 -9.61992 -9.35317 -8.67825 -7.51818 -6.76301 -6.52565 -4.17296 2.72965 2.87043 3.10727 3.12689 3.23047 3.33431 3.97586 4.01412 4.53397 4.55743 4.61456 4.77550 4.84185 5.18404 5.28175 5.46362 5.59919 5.68105 5.72796 5.82907 5.99099 6.06886 6.14177 6.46337 6.81034 6.94490 7.15611 7.28112 7.39582 7.58505 7.89055 8.13352 8.25618 8.50427 8.58760 8.90327 8.93331 10.25681 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035182 B = 0.004265 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.680780 B = 6563.906597 C = 7185.003769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C 0.082 3.918 4 H 0.084 0.916 5 F -0.209 7.209 6 C 0.113 3.887 7 N -0.757 5.757 8 C 0.098 3.902 9 C -0.148 4.148 10 C -0.184 4.184 11 C 0.085 3.915 12 C -0.464 4.464 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.799 5.799 16 Si 0.907 3.093 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.120 4.120 21 C -0.061 4.061 22 Cl -0.124 7.124 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.392 0.608 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.281 0.719 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 -6.715 -2.293 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C 0.045 3.955 4 H 0.102 0.898 5 F -0.190 7.190 6 C -0.013 4.013 7 N -0.394 5.394 8 C 0.000 4.000 9 C -0.171 4.171 10 C -0.204 4.204 11 C 0.081 3.919 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.425 5.425 16 Si 0.731 3.269 17 H -0.189 1.189 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.140 4.140 21 C -0.091 4.091 22 Cl -0.095 7.095 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.134 -6.560 -2.104 13.093 hybrid contribution 0.443 0.730 0.012 0.854 sum -10.691 -5.831 -2.092 12.356 Atomic orbital electron populations 1.21757 0.94867 1.02081 1.02384 1.22068 0.97158 0.95358 1.04065 1.21873 0.95509 0.93765 0.84309 0.89759 1.92824 1.92828 1.84245 1.49141 1.21627 0.91389 0.86567 1.01745 1.43799 1.04462 1.04858 1.86329 1.16965 0.83304 0.91326 1.08397 1.19820 0.93203 0.95176 1.08858 1.20653 0.93738 0.96377 1.09665 1.17371 0.93282 0.89814 0.91386 1.19335 0.92886 1.02447 1.34742 0.90454 1.25853 0.99513 0.96040 0.92831 1.69828 1.38467 1.13132 1.21053 0.86398 0.82032 0.78409 0.80034 1.18929 1.20451 1.19143 1.20899 0.88621 1.00963 1.03538 1.20052 0.90320 0.84734 1.13949 1.98234 1.63616 1.50361 1.97334 0.92142 0.92523 0.92205 0.89889 0.90474 0.92265 0.91702 0.77344 0.88456 0.88357 0.90860 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.83 37.16 0.37 -0.88 16 2 C -0.15 -1.34 5.70 -26.73 -0.15 -1.49 16 3 C 0.08 0.97 3.40 -26.73 -0.09 0.88 16 4 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 5 F -0.21 -3.05 16.62 2.25 0.04 -3.02 16 6 C 0.11 1.61 4.65 -4.04 -0.02 1.59 16 7 N -0.76 -13.74 5.59 -58.46 -0.33 -14.07 16 8 C 0.10 2.14 6.67 -83.64 -0.56 1.59 16 9 C -0.15 -3.20 9.23 -39.78 -0.37 -3.57 16 10 C -0.18 -4.35 9.74 -39.25 -0.38 -4.73 16 11 C 0.08 2.22 5.57 -106.80 -0.60 1.62 16 12 C -0.46 -12.13 9.03 -37.88 -0.34 -12.47 16 13 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 14 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 15 N -0.80 -20.78 10.96 55.54 0.61 -20.17 16 16 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 16 17 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 C -0.12 -3.09 8.40 -39.24 -0.33 -3.42 16 21 C -0.06 -1.43 6.30 -39.70 -0.25 -1.68 16 22 Cl -0.12 -2.55 27.55 -51.86 -1.43 -3.97 16 23 H 0.06 0.54 7.93 -51.93 -0.41 0.13 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.88 7.91 -51.93 -0.41 0.46 16 29 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 30 H 0.39 7.01 7.05 -40.82 -0.29 6.73 16 31 H 0.10 1.81 6.68 -52.48 -0.35 1.46 16 32 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 33 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 34 H 0.13 3.55 6.16 -52.48 -0.32 3.22 16 LS Contribution 303.94 15.07 4.58 4.58 Total: -1.00 -27.36 303.94 -8.65 -36.01 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.28 Total: 7.73 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.81 Total: -20.78 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.28 Total: -34.24 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.02 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -1.43 Total: -3.97 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.36 -8.65 -36.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453123553.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.944 kcal (2) G-P(sol) polarization free energy of solvation -27.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds