Wall clock time and date at job start Mon Mar 30 2020 01:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47025 * 2 1 4 4 H 1.08997 * 109.47192 * 305.00185 * 3 2 1 5 5 F 1.39902 * 109.47113 * 64.99826 * 3 2 1 6 6 C 1.52996 * 109.46957 * 184.99471 * 3 2 1 7 7 N 1.46503 * 109.46951 * 179.97438 * 6 3 2 8 8 C 1.38904 * 119.99893 * 179.97438 * 7 6 3 9 9 C 1.39544 * 119.84861 * 359.73211 * 8 7 6 10 10 C 1.36345 * 120.17296 * 179.75831 * 9 8 7 11 11 C 1.40909 * 119.85105 * 0.53113 * 10 9 8 12 12 C 1.41132 * 120.14433 * 179.73972 * 11 10 9 13 13 H 1.08001 * 120.00473 * 24.60851 * 12 11 10 14 14 C 1.39863 * 119.99884 * 204.59755 * 12 11 10 15 15 N 1.30907 * 119.99718 * 17.97421 * 14 12 11 16 16 Si 1.86796 * 120.00199 * 197.97152 * 14 12 11 17 17 H 1.48497 * 109.47314 * 60.00466 * 16 14 12 18 18 H 1.48507 * 109.47027 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47116 * 300.00157 * 16 14 12 20 20 C 1.40860 * 119.69960 * 359.72119 * 11 10 9 21 21 C 1.36428 * 119.82687 * 359.97438 * 20 11 10 22 22 Cl 1.73603 * 119.92654 * 180.02562 * 21 20 11 23 23 H 1.08993 * 109.47483 * 300.00032 * 1 2 3 24 24 H 1.08999 * 109.47116 * 60.00446 * 1 2 3 25 25 H 1.09011 * 109.46954 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47483 * 239.99968 * 2 1 3 27 27 H 1.09001 * 109.46670 * 119.99830 * 2 1 3 28 28 H 1.09001 * 109.47551 * 299.99938 * 6 3 2 29 29 H 1.09005 * 109.47216 * 60.00434 * 6 3 2 30 30 H 0.96998 * 119.99980 * 0.02562 * 7 6 3 31 31 H 1.08011 * 119.91499 * 359.97438 * 9 8 7 32 32 H 1.08000 * 120.07446 * 180.25458 * 10 9 8 33 33 H 0.97000 * 119.99682 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.08120 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 9 1.6698 2.0680 1.1954 6 6 3.5648 1.4443 -0.1256 7 7 4.0530 2.8256 -0.1262 8 6 5.4144 3.0809 -0.2305 9 6 6.3146 2.0192 -0.3289 10 6 7.6519 2.2624 -0.4366 11 6 8.1257 3.5894 -0.4370 12 6 9.5091 3.8481 -0.5426 13 1 10.1602 3.1226 -1.0076 14 6 10.0368 5.0440 -0.0452 15 7 9.3503 5.7555 0.8127 16 14 11.7213 5.6258 -0.6051 17 1 11.7132 5.8221 -2.0770 18 1 12.0490 6.9103 0.0643 19 1 12.7410 4.6073 -0.2471 20 6 7.2123 4.6566 -0.3321 21 6 5.8763 4.3989 -0.2313 22 17 4.7483 5.7122 -0.1025 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.9994 0.9053 0.7163 29 1 3.8532 0.9570 -1.0570 30 1 3.4257 3.5618 -0.0530 31 1 5.9508 1.0023 -0.3233 32 1 8.3468 1.4396 -0.5168 33 1 9.7166 6.5847 1.1580 34 1 7.5686 5.6762 -0.3323 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453123553.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:24 Heat of formation + Delta-G solvation = -69.562282 kcal Electronic energy + Delta-G solvation = -18036.570279 eV Core-core repulsion = 14907.809866 eV Total energy + Delta-G solvation = -3128.760413 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.64257 -39.95296 -37.16173 -37.08640 -35.40846 -34.34661 -31.41875 -30.92811 -29.12679 -26.26522 -24.57240 -22.91667 -22.06158 -21.96406 -19.25868 -17.99848 -17.71893 -17.39114 -16.62397 -16.12969 -15.99339 -15.42765 -14.96083 -14.66316 -14.60521 -14.47587 -14.06526 -13.82824 -13.57534 -13.42708 -12.90507 -12.85707 -12.79723 -12.51670 -12.14112 -11.95830 -11.93148 -11.68287 -11.63413 -11.49077 -11.35897 -11.10099 -10.40952 -9.34420 -8.59822 -8.25675 -6.07669 0.89681 1.07262 1.41984 1.52010 1.55150 1.57737 2.26292 2.69095 2.77155 3.51738 3.70133 3.73090 3.92169 3.96670 4.32227 4.39262 4.50954 4.71087 4.71224 4.84624 4.89276 5.04237 5.08101 5.11409 5.28461 5.32454 5.37081 5.45570 5.56030 5.75606 6.02908 6.25246 6.54742 6.70359 6.95942 7.01233 7.09722 8.43309 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035182 B = 0.004265 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.680780 B = 6563.906597 C = 7185.003769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.143 4.143 3 C 0.082 3.918 4 H 0.097 0.903 5 F -0.227 7.227 6 C 0.106 3.894 7 N -0.755 5.755 8 C 0.113 3.887 9 C -0.149 4.149 10 C -0.186 4.186 11 C 0.049 3.951 12 C -0.499 4.499 13 H 0.078 0.922 14 C 0.033 3.967 15 N -0.835 5.835 16 Si 0.977 3.023 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.259 1.259 20 C -0.140 4.140 21 C -0.081 4.081 22 Cl -0.104 7.104 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.393 0.607 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.284 0.716 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 -8.171 -2.926 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.181 4.181 3 C 0.046 3.954 4 H 0.115 0.885 5 F -0.209 7.209 6 C -0.019 4.019 7 N -0.390 5.390 8 C 0.012 3.988 9 C -0.172 4.172 10 C -0.206 4.206 11 C 0.046 3.954 12 C -0.530 4.530 13 H 0.096 0.904 14 C -0.180 4.180 15 N -0.462 5.462 16 Si 0.799 3.201 17 H -0.187 1.187 18 H -0.198 1.198 19 H -0.183 1.183 20 C -0.161 4.161 21 C -0.112 4.112 22 Cl -0.076 7.076 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.228 0.772 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.158 -8.044 -2.736 14.832 hybrid contribution 0.535 1.098 0.217 1.241 sum -11.623 -6.946 -2.519 13.772 Atomic orbital electron populations 1.21762 0.94180 1.03011 1.02101 1.22065 0.97684 0.93308 1.05037 1.22047 0.93816 0.95710 0.83866 0.88511 1.92794 1.92862 1.84814 1.50380 1.21917 0.93151 0.84219 1.02612 1.43977 1.02971 1.06893 1.85182 1.17155 0.85104 0.90712 1.05831 1.20138 0.92368 0.96826 1.07844 1.20904 0.95080 0.95835 1.08807 1.17703 0.93746 0.91047 0.92935 1.19596 0.93387 1.03729 1.36268 0.90397 1.26660 1.03305 0.95729 0.92352 1.69906 1.40392 1.13692 1.22258 0.85322 0.77313 0.78057 0.79423 1.18655 1.19788 1.18350 1.20761 0.89832 1.00014 1.05473 1.20183 0.90242 0.86328 1.14401 1.98224 1.62498 1.49586 1.97261 0.93397 0.91878 0.90702 0.87850 0.90591 0.92412 0.89702 0.77249 0.84965 0.87111 0.90558 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.83 71.98 0.71 -1.35 16 2 C -0.14 -2.12 5.70 30.59 0.17 -1.94 16 3 C 0.08 1.70 3.40 30.59 0.10 1.81 16 4 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 5 F -0.23 -6.22 16.62 44.97 0.75 -5.47 16 6 C 0.11 2.69 4.65 86.38 0.40 3.09 16 7 N -0.75 -25.79 5.59 -338.88 -1.89 -27.68 16 8 C 0.11 4.75 6.67 38.68 0.26 5.01 16 9 C -0.15 -6.18 9.23 22.14 0.20 -5.98 16 10 C -0.19 -8.73 9.74 22.48 0.22 -8.51 16 11 C 0.05 2.62 5.57 -21.27 -0.12 2.51 16 12 C -0.50 -26.83 9.03 23.37 0.21 -26.62 16 13 H 0.08 3.99 7.91 -2.91 -0.02 3.96 16 14 C 0.03 1.68 5.13 85.22 0.44 2.11 16 15 N -0.84 -44.91 10.96 21.82 0.24 -44.67 16 16 Si 0.98 38.99 29.60 68.60 2.03 41.02 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 18 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 19 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 20 C -0.14 -7.44 8.40 22.49 0.19 -7.25 16 21 C -0.08 -3.83 6.30 22.19 0.14 -3.69 16 22 Cl -0.10 -4.26 27.55 -2.72 -0.07 -4.33 16 23 H 0.05 0.76 7.93 -2.39 -0.02 0.74 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.53 7.91 -2.39 -0.02 1.51 16 29 H 0.08 1.88 7.94 -2.38 -0.02 1.86 16 30 H 0.39 13.34 7.05 -92.71 -0.65 12.69 16 31 H 0.13 4.47 6.68 -2.91 -0.02 4.45 16 32 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 33 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 34 H 0.11 6.18 6.16 -2.91 -0.02 6.16 16 Total: -1.00 -59.95 303.94 4.44 -55.51 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.46 Total: 26.44 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 2.93 Total: -40.82 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -1.65 Total: -72.35 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.75 Total: -5.47 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Atomic # 17 Polarization: -4.26 SS G_CDS: -0.07 Total: -4.33 kcal Total: -59.95 4.44 -55.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453123553.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.052 kcal (2) G-P(sol) polarization free energy of solvation -59.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds