Wall clock time and date at job start Mon Mar 30 2020 01:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47175 * 2 1 4 4 C 1.36934 * 120.00088 * 264.64716 * 3 2 1 5 5 H 1.08006 * 120.00056 * 320.90805 * 4 3 2 6 6 C 1.38814 * 120.00441 * 140.91111 * 4 3 2 7 7 N 1.31621 * 119.99627 * 339.81786 * 6 4 3 8 8 Si 1.86801 * 120.00305 * 159.81673 * 6 4 3 9 9 H 1.48494 * 109.46985 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46814 * 120.00020 * 8 6 4 11 11 H 1.48499 * 109.46722 * 240.00139 * 8 6 4 12 12 C 1.46504 * 119.99844 * 84.64466 * 3 2 1 13 13 C 1.50695 * 109.47085 * 90.00373 * 12 3 2 14 14 C 1.38455 * 120.02310 * 89.99976 * 13 12 3 15 15 F 1.35099 * 120.01826 * 0.04245 * 14 13 12 16 16 C 1.38447 * 119.96743 * 180.02562 * 14 13 12 17 17 C 1.38230 * 119.99427 * 0.02562 * 16 14 13 18 18 C 1.50703 * 119.97716 * 179.97438 * 17 16 14 19 19 C 1.38193 * 120.04412 * 359.97438 * 17 16 14 20 20 C 1.38294 * 120.01632 * 270.01712 * 13 12 3 21 21 Cl 1.73601 * 120.00402 * 359.96022 * 20 13 12 22 22 H 1.09001 * 109.47327 * 59.99710 * 1 2 3 23 23 H 1.09005 * 109.47045 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46996 * 299.99530 * 1 2 3 25 25 H 1.09001 * 109.47412 * 240.00129 * 2 1 3 26 26 H 1.08998 * 109.47707 * 119.99957 * 2 1 3 27 27 H 0.96997 * 120.00073 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47086 * 329.99750 * 12 3 2 29 29 H 1.09000 * 109.46839 * 210.00012 * 12 3 2 30 30 H 1.07993 * 120.00530 * 179.71773 * 16 14 13 31 31 H 1.09007 * 109.47171 * 89.99654 * 18 17 16 32 32 H 1.09003 * 109.47401 * 209.99790 * 18 17 16 33 33 H 1.08997 * 109.47356 * 330.00146 * 18 17 16 34 34 H 1.07993 * 119.98554 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3508 1.9899 -1.1807 5 1 2.8580 1.4302 -1.9527 6 6 2.0362 3.3263 -1.3854 7 7 1.0998 3.9005 -0.6603 8 14 2.9418 4.3098 -2.6901 9 1 3.9404 3.4398 -3.3615 10 1 1.9698 4.8141 -3.6932 11 1 3.6353 5.4576 -2.0521 12 6 2.1508 2.1113 1.2632 13 6 3.5299 1.8901 1.8289 14 6 4.5627 2.7487 1.4922 15 9 4.3344 3.7857 0.6570 16 6 5.8294 2.5441 2.0122 17 6 6.0625 1.4828 2.8666 18 6 7.4417 1.2602 3.4319 19 6 5.0319 0.6258 3.2027 20 6 3.7648 0.8293 2.6844 21 17 2.4706 -0.2475 3.1078 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.8802 4.8344 -0.8030 28 1 1.4052 1.7501 1.9716 29 1 1.9974 3.1757 1.0855 30 1 6.6364 3.2107 1.7463 31 1 7.5409 1.8026 4.3722 32 1 7.5944 0.1955 3.6087 33 1 8.1873 1.6215 2.7237 34 1 5.2152 -0.2033 3.8700 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459331836.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:15 Heat of formation + Delta-G solvation = -29.779516 kcal Electronic energy + Delta-G solvation = -19343.343896 eV Core-core repulsion = 16216.308593 eV Total energy + Delta-G solvation = -3127.035303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.69689 -40.32089 -37.79010 -37.36371 -34.02309 -33.70358 -31.32650 -30.85136 -29.06811 -26.34622 -24.97691 -23.75873 -22.53058 -21.56038 -18.83686 -17.89563 -17.76189 -16.81226 -16.62155 -16.42803 -15.72613 -15.66788 -15.60079 -14.59517 -14.47856 -14.28820 -14.15474 -13.56456 -13.44906 -13.40529 -13.06659 -12.88469 -12.60981 -12.51438 -12.40568 -12.25991 -12.05408 -11.98186 -11.92154 -11.68825 -11.12487 -10.53896 -9.60899 -9.43495 -8.57447 -7.84933 -5.46209 0.10623 0.21858 1.14911 1.38784 1.43718 1.50414 2.44660 2.54822 3.27490 3.44287 3.80121 3.83518 3.97621 4.09101 4.30065 4.46600 4.47815 4.71059 4.76867 4.82618 4.89547 4.91828 5.00903 5.07432 5.17753 5.29431 5.31332 5.32260 5.46162 5.54011 5.62678 5.74072 5.92230 6.46748 7.15906 7.83399 8.38193 9.12324 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.009491 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.439391 B = 2949.540375 C = 4251.587391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.129 3.871 3 N -0.583 5.583 4 C -0.267 4.267 5 H 0.047 0.953 6 C -0.010 4.010 7 N -0.907 5.907 8 Si 0.936 3.064 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.184 3.816 13 C -0.137 4.137 14 C 0.097 3.903 15 F -0.146 7.146 16 C -0.158 4.158 17 C -0.055 4.055 18 C -0.105 4.105 19 C -0.121 4.121 20 C -0.014 4.014 21 Cl -0.057 7.057 22 H 0.026 0.974 23 H 0.065 0.935 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.251 0.749 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.152 0.848 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.239 -7.035 10.434 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.004 3.996 3 N -0.303 5.303 4 C -0.398 4.398 5 H 0.065 0.935 6 C -0.209 4.209 7 N -0.550 5.550 8 Si 0.765 3.235 9 H -0.195 1.195 10 H -0.215 1.215 11 H -0.215 1.215 12 C 0.058 3.942 13 C -0.141 4.141 14 C 0.076 3.924 15 F -0.125 7.125 16 C -0.177 4.177 17 C -0.056 4.056 18 C -0.161 4.161 19 C -0.139 4.139 20 C -0.042 4.042 21 Cl -0.028 7.028 22 H 0.045 0.955 23 H 0.084 0.916 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.170 0.830 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 10.009 -6.962 10.399 16.024 hybrid contribution -0.357 1.127 -1.191 1.678 sum 9.652 -5.834 9.208 14.560 Atomic orbital electron populations 1.22093 0.98825 0.99956 0.99901 1.21245 0.92661 0.85974 0.99719 1.43835 1.74216 1.10992 1.01293 1.19110 1.31281 0.94570 0.94801 0.93517 1.25597 0.96346 0.99651 0.99265 1.70073 1.29624 1.11970 1.43355 0.85702 0.78897 0.79285 0.79613 1.19493 1.21524 1.21548 1.19627 0.88321 0.99753 0.86487 1.20967 1.00057 0.95247 0.97856 1.17790 0.94790 0.86978 0.92796 1.91485 1.95430 1.56004 1.69544 1.21335 0.94750 1.01169 1.00437 1.19963 0.97669 0.92588 0.95349 1.20847 0.89488 1.04093 1.01674 1.21213 0.89524 1.01604 1.01586 1.20635 0.90666 0.93105 0.99765 1.98322 1.50099 1.62868 1.91543 0.95500 0.91610 0.94770 0.94359 0.91777 0.93984 0.93581 0.91336 0.83015 0.89149 0.89393 0.90298 0.81871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.11 10.23 71.98 0.74 -5.38 16 2 C 0.13 5.64 6.39 86.38 0.55 6.19 16 3 N -0.58 -29.82 2.40 -706.34 -1.69 -31.52 16 4 C -0.27 -15.09 9.42 84.03 0.79 -14.30 16 5 H 0.05 2.69 7.91 -2.91 -0.02 2.67 16 6 C -0.01 -0.56 4.67 84.86 0.40 -0.16 16 7 N -0.91 -53.94 11.50 21.65 0.25 -53.69 16 8 Si 0.94 46.51 29.60 68.60 2.03 48.54 16 9 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 11 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 12 C 0.18 9.03 4.87 85.63 0.42 9.45 16 13 C -0.14 -5.74 5.47 -19.80 -0.11 -5.85 16 14 C 0.10 3.99 7.24 22.37 0.16 4.15 16 15 F -0.15 -7.06 16.17 44.97 0.73 -6.33 16 16 C -0.16 -4.89 9.68 22.32 0.22 -4.67 16 17 C -0.05 -1.35 5.88 -19.88 -0.12 -1.47 16 18 C -0.10 -1.54 10.01 71.24 0.71 -0.82 16 19 C -0.12 -3.18 9.48 22.30 0.21 -2.97 16 20 C -0.01 -0.48 6.31 22.32 0.14 -0.34 16 21 Cl -0.06 -1.80 24.61 -2.72 -0.07 -1.87 16 22 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.04 1.67 8.00 -2.39 -0.02 1.65 16 26 H 0.06 2.52 5.12 -2.39 -0.01 2.51 16 27 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.05 2.17 6.83 -2.39 -0.02 2.16 16 29 H 0.07 3.90 5.08 -2.39 -0.01 3.88 16 30 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 33 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 34 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -65.46 301.38 6.46 -59.00 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: 1.10 Total: 2.04 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 4.11 Total: -16.17 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -1.45 Total: -85.21 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.73 Total: -6.33 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.07 Total: -1.87 kcal Total: -65.46 6.46 -59.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459331836.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.216 kcal (2) G-P(sol) polarization free energy of solvation -65.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds