Wall clock time and date at job start Mon Mar 30 2020 01:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46907 * 230.63466 * 3 2 1 5 5 C 1.36907 * 120.00166 * 271.86221 * 4 3 2 6 6 H 1.08000 * 120.00286 * 192.93358 * 5 4 3 7 7 C 1.39022 * 119.99910 * 12.94055 * 5 4 3 8 8 N 1.31387 * 119.99919 * 13.89980 * 7 5 4 9 9 Si 1.86796 * 120.00009 * 193.90138 * 7 5 4 10 10 H 1.48498 * 109.47207 * 60.00295 * 9 7 5 11 11 H 1.48506 * 109.47203 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47458 * 299.99837 * 9 7 5 13 13 C 1.34779 * 119.99831 * 91.86576 * 4 3 2 14 14 O 1.21615 * 119.99708 * 184.32726 * 13 4 3 15 15 C 1.47585 * 120.00165 * 4.60994 * 13 4 3 16 16 C 1.41650 * 120.10078 * 308.12755 * 15 13 4 17 17 C 1.35739 * 119.54951 * 179.69274 * 16 15 13 18 18 C 1.40861 * 119.54095 * 0.59816 * 17 16 15 19 19 N 1.32518 * 133.32626 * 179.69883 * 18 17 16 20 20 N 1.28527 * 110.24969 * 179.97438 * 19 18 17 21 21 N 1.28982 * 110.84321 * 359.97438 * 20 19 18 22 22 N 1.36913 * 120.04303 * 359.67530 * 18 17 16 23 23 C 1.35517 * 120.86201 * 0.02562 * 22 18 17 24 24 H 4.40635 * 5.51474 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47325 * 110.64037 * 3 2 1 26 26 H 1.09001 * 109.47396 * 350.63317 * 3 2 1 27 27 H 0.96994 * 119.99960 * 179.97438 * 8 7 5 28 28 H 1.07996 * 120.22863 * 359.97438 * 16 15 13 29 29 H 1.08000 * 120.23180 * 180.27160 * 17 16 15 30 30 H 1.08011 * 119.89358 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8770 1.0679 5 6 3.3251 2.2107 0.8252 6 1 3.8748 2.8148 1.5318 7 6 2.8115 2.7875 -0.3308 8 7 1.9226 2.1395 -1.0492 9 14 3.3852 4.4838 -0.8625 10 1 4.8518 4.4602 -1.0945 11 1 2.6912 4.8703 -2.1172 12 1 3.0682 5.4698 0.2017 13 6 3.3945 0.3701 2.2892 14 8 3.7238 1.1096 3.1968 15 6 3.2864 -1.0830 2.5236 16 6 2.1067 -1.7759 2.1567 17 6 2.0217 -3.1135 2.3716 18 6 3.1029 -3.7912 2.9680 19 7 3.3102 -5.0568 3.3017 20 7 4.4745 -5.1930 3.8287 21 7 5.0924 -4.0618 3.8752 22 7 4.2326 -3.1029 3.3209 23 6 4.3296 -1.7685 3.1049 24 1 -1.0501 0.0000 -0.0003 25 1 3.0092 0.3631 -0.9617 26 1 3.0098 -1.0131 0.1673 27 1 1.5640 2.5421 -1.8555 28 1 1.2822 -1.2445 1.7048 29 1 1.1291 -3.6535 2.0921 30 1 5.2280 -1.2410 3.3899 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490963283.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:25 Heat of formation + Delta-G solvation = 179.806071 kcal Electronic energy + Delta-G solvation = -19940.003211 eV Core-core repulsion = 16740.868689 eV Total energy + Delta-G solvation = -3199.134522 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.54934 -41.20616 -39.16149 -37.29137 -35.32206 -34.13836 -33.19618 -32.98549 -31.62025 -28.46346 -27.40761 -25.76180 -25.45627 -23.96775 -21.90213 -20.05459 -19.80694 -18.57011 -18.31263 -18.18613 -17.90487 -17.06817 -16.25216 -16.03496 -15.79038 -15.48395 -14.97728 -14.54119 -14.31477 -14.06048 -13.89480 -13.72610 -13.40856 -12.89897 -12.82704 -12.68197 -12.51503 -12.30461 -12.16384 -11.34537 -11.28254 -10.99555 -10.72516 -10.47615 -9.99131 -9.74639 -8.34533 -5.99077 -0.92293 -0.64720 0.45799 0.81887 1.37332 1.47110 1.54549 1.67325 2.04364 2.06319 2.32575 2.37731 2.54662 2.77914 3.03096 3.13513 3.40181 3.57827 3.73061 3.95177 3.98772 4.09665 4.46316 4.56698 4.61969 4.77518 4.95711 5.03698 5.13867 5.41768 5.49009 5.90765 6.31857 7.01567 7.11981 7.17603 7.25501 7.77259 8.56537 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031855 B = 0.005468 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.784817 B = 5119.344262 C = 5706.448403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.147 4.147 3 C 0.228 3.772 4 N -0.421 5.421 5 C -0.344 4.344 6 H 0.086 0.914 7 C 0.010 3.990 8 N -0.860 5.860 9 Si 0.988 3.012 10 H -0.269 1.269 11 H -0.272 1.272 12 H -0.279 1.279 13 C 0.473 3.527 14 O -0.617 6.617 15 C -0.104 4.104 16 C -0.033 4.033 17 C -0.074 4.074 18 C 0.238 3.762 19 N -0.339 5.339 20 N -0.025 5.025 21 N -0.131 5.131 22 N -0.298 5.298 23 C 0.141 3.859 24 H 0.234 0.766 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.278 0.722 28 H 0.173 0.827 29 H 0.210 0.790 30 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 -6.160 -1.699 7.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.148 4.148 3 C 0.106 3.894 4 N -0.136 5.136 5 C -0.471 4.471 6 H 0.104 0.896 7 C -0.195 4.195 8 N -0.496 5.496 9 Si 0.812 3.188 10 H -0.194 1.194 11 H -0.197 1.197 12 H -0.204 1.204 13 C 0.262 3.738 14 O -0.505 6.505 15 C -0.113 4.113 16 C -0.059 4.059 17 C -0.096 4.096 18 C -0.015 4.015 19 N -0.201 5.201 20 N -0.018 5.018 21 N -0.115 5.115 22 N -0.075 5.075 23 C 0.011 3.989 24 H 0.251 0.749 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.190 0.810 29 H 0.227 0.773 30 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -2.035 -7.048 -0.873 7.387 hybrid contribution -0.112 1.914 -0.468 1.973 sum -2.146 -5.134 -1.341 5.724 Atomic orbital electron populations 1.25140 0.96205 1.03183 1.00692 1.22890 0.94367 0.97812 0.99757 1.18541 0.85477 0.92450 0.92893 1.43815 1.53401 1.08463 1.07932 1.19705 1.34947 0.85145 1.07312 0.89583 1.25980 0.94491 1.03017 0.96049 1.70050 1.24220 1.39223 1.16153 0.85051 0.78729 0.77383 0.77593 1.19353 1.19698 1.20424 1.17665 0.86858 0.86346 0.82925 1.90665 1.55812 1.60740 1.43271 1.19996 0.95018 0.94680 1.01586 1.22030 0.96950 0.93735 0.93232 1.20655 0.97152 0.92910 0.98899 1.23451 0.90469 0.89148 0.98411 1.75059 1.10424 1.13495 1.21086 1.77772 1.00023 1.15948 1.08106 1.82764 1.13784 0.91378 1.23545 1.48694 1.12994 1.09011 1.36842 1.21928 1.01670 0.78450 0.96822 0.74913 0.87951 0.89363 0.91170 0.80974 0.77322 0.78782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -7.31 18.79 74.32 1.40 -5.91 16 2 C -0.15 -5.22 8.60 31.13 0.27 -4.95 16 3 C 0.23 8.48 4.75 84.57 0.40 8.88 16 4 N -0.42 -18.58 2.58 -648.96 -1.68 -20.25 16 5 C -0.34 -16.95 9.43 84.09 0.79 -16.16 16 6 H 0.09 4.58 7.30 -2.91 -0.02 4.56 16 7 C 0.01 0.44 5.13 84.95 0.44 0.87 16 8 N -0.86 -38.39 8.55 21.68 0.19 -38.20 16 9 Si 0.99 37.50 29.58 68.60 2.03 39.53 16 10 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 11 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 12 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 13 C 0.47 20.18 7.14 86.71 0.62 20.80 16 14 O -0.62 -31.28 16.68 -4.08 -0.07 -31.35 16 15 C -0.10 -3.35 4.77 -20.10 -0.10 -3.44 16 16 C -0.03 -0.87 7.68 22.53 0.17 -0.70 16 17 C -0.07 -1.61 10.08 22.33 0.23 -1.39 16 18 C 0.24 6.78 8.02 134.15 1.08 7.85 16 19 N -0.34 -10.73 12.26 -55.52 -0.68 -11.41 16 20 N -0.03 -0.86 13.35 37.02 0.49 -0.37 16 21 N -0.13 -4.38 13.99 37.02 0.52 -3.86 16 22 N -0.30 -9.18 3.92 -191.22 -0.75 -9.93 16 23 C 0.14 4.26 10.94 84.00 0.92 5.18 16 24 H 0.23 5.39 7.80 -4.41 -0.03 5.35 16 25 H 0.10 4.14 6.39 -2.39 -0.02 4.13 16 26 H 0.09 2.70 5.86 -2.39 -0.01 2.68 16 27 H 0.28 11.83 8.31 -92.71 -0.77 11.06 16 28 H 0.17 4.50 4.57 -2.91 -0.01 4.49 16 29 H 0.21 2.85 8.06 -2.91 -0.02 2.82 16 30 H 0.20 5.46 8.06 -2.91 -0.02 5.43 16 Total: -1.00 -60.42 273.91 7.47 -52.95 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.21 Total: 11.86 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.21 Total: 11.04 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -1.91 Total: -84.03 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.07 Total: -31.35 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -60.42 7.47 -52.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963283.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.754 kcal (2) G-P(sol) polarization free energy of solvation -60.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds