Wall clock time and date at job start Mon Mar 30 2020 00:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46970 * 298.14382 * 3 2 1 5 5 C 1.36877 * 119.99924 * 82.71077 * 4 3 2 6 6 H 1.07997 * 119.99699 * 167.45096 * 5 4 3 7 7 C 1.39037 * 119.99716 * 347.44442 * 5 4 3 8 8 N 1.31367 * 120.00585 * 0.07161 * 7 5 4 9 9 Si 1.86804 * 119.99875 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46879 * 60.00554 * 9 7 5 11 11 H 1.48496 * 109.47311 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47098 * 300.00655 * 9 7 5 13 13 C 1.34779 * 120.00153 * 262.70223 * 4 3 2 14 14 O 1.21627 * 119.99708 * 185.27713 * 13 4 3 15 15 C 1.47399 * 119.99715 * 5.01056 * 13 4 3 16 16 C 1.39331 * 120.25450 * 51.91521 * 15 13 4 17 17 C 1.38420 * 120.27017 * 179.72627 * 16 15 13 18 18 C 1.37672 * 120.80055 * 0.57844 * 17 16 15 19 19 C 1.40102 * 120.16811 * 359.70424 * 18 17 16 20 20 N 1.35393 * 133.02861 * 180.02562 * 19 18 17 21 21 N 1.28657 * 110.10422 * 179.97438 * 20 19 18 22 22 N 1.40248 * 109.43164 * 0.02562 * 21 20 19 23 23 H 0.96996 * 126.66851 * 180.02562 * 22 21 20 24 24 C 1.36972 * 106.66806 * 359.97438 * 22 21 20 25 25 H 1.08997 * 109.47017 * 178.14412 * 3 2 1 26 26 H 1.08996 * 109.46865 * 58.14570 * 3 2 1 27 27 H 0.96996 * 120.00658 * 179.97438 * 8 7 5 28 28 H 1.07993 * 119.86380 * 0.03037 * 16 15 13 29 29 H 1.07992 * 119.60073 * 180.28272 * 17 16 15 30 30 H 1.07998 * 119.90996 * 179.67876 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0966 -0.6506 1.2179 5 6 3.1835 -2.0154 1.2764 6 1 3.7260 -2.4878 2.0820 7 6 2.5734 -2.7933 0.2989 8 7 1.9146 -2.2186 -0.6817 9 14 2.6913 -4.6559 0.3791 10 1 2.0876 -5.1359 1.6481 11 1 1.9626 -5.2481 -0.7713 12 1 4.1180 -5.0644 0.3241 13 6 3.4607 0.0940 2.2807 14 8 3.9559 -0.4388 3.2555 15 6 3.2641 1.5547 2.2592 16 6 2.0183 2.0907 1.9401 17 6 1.8318 3.4622 1.9254 18 6 2.8713 4.3181 2.2124 19 6 4.1364 3.8073 2.5309 20 7 5.3154 4.3919 2.8493 21 7 6.2107 3.4934 3.0643 22 7 5.6460 2.2213 2.8914 23 1 6.0973 1.3686 2.9921 24 6 4.3330 2.4169 2.5540 25 1 2.9709 1.0279 -0.0333 26 1 2.9716 -0.5415 -0.8729 27 1 1.4893 -2.7613 -1.3639 28 1 1.1934 1.4334 1.7082 29 1 0.8604 3.8659 1.6811 30 1 2.7110 5.3859 2.1917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525864058.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:55 Heat of formation + Delta-G solvation = 125.639531 kcal Electronic energy + Delta-G solvation = -20159.546385 eV Core-core repulsion = 16958.063025 eV Total energy + Delta-G solvation = -3201.483359 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.95712 -39.27606 -37.01097 -36.04454 -34.45579 -33.33120 -32.12074 -30.27554 -29.91571 -27.64490 -25.45825 -23.99366 -22.85140 -22.26505 -20.03935 -18.22436 -17.83617 -17.66198 -16.39507 -16.23583 -15.54011 -15.35250 -14.94866 -14.54401 -14.24418 -13.45071 -13.36636 -13.17760 -12.31378 -12.20070 -12.01232 -11.89194 -11.71980 -11.64160 -11.39613 -11.31865 -11.07582 -10.98897 -10.61025 -10.57820 -10.54459 -9.48596 -8.99507 -8.77965 -8.39459 -8.19428 -6.67199 -4.25774 0.44778 1.39109 2.19222 2.57642 2.97462 3.08484 3.10791 3.33311 3.55421 3.76639 3.90152 3.99464 4.20314 4.47952 4.72603 4.79141 4.97547 5.02490 5.15099 5.27853 5.39456 5.64042 5.86287 5.95559 6.05555 6.30099 6.40244 6.62577 6.68304 7.07949 7.21690 7.58805 8.02593 8.05254 8.67562 8.73212 8.91457 9.42058 10.29870 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.006509 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.478177 B = 4300.612049 C = 5097.183714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C 0.260 3.740 3 C 0.215 3.785 4 N -0.426 5.426 5 C -0.303 4.303 6 H 0.114 0.886 7 C 0.032 3.968 8 N -0.886 5.886 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.270 1.270 13 C 0.479 3.521 14 O -0.574 6.574 15 C -0.101 4.101 16 C -0.050 4.050 17 C -0.131 4.131 18 C -0.032 4.032 19 C -0.026 4.026 20 N -0.220 5.220 21 N -0.010 5.010 22 N -0.482 5.482 23 H 0.453 0.547 24 C 0.129 3.871 25 H 0.078 0.922 26 H 0.145 0.855 27 H 0.279 0.721 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 7.998 -0.405 8.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.057 4.057 3 C 0.089 3.911 4 N -0.143 5.143 5 C -0.430 4.430 6 H 0.132 0.868 7 C -0.171 4.171 8 N -0.527 5.527 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.195 1.195 13 C 0.268 3.732 14 O -0.459 6.459 15 C -0.109 4.109 16 C -0.073 4.073 17 C -0.152 4.152 18 C -0.054 4.054 19 C -0.150 4.150 20 N -0.100 5.100 21 N 0.008 4.992 22 N -0.204 5.204 23 H 0.301 0.699 24 C 0.004 3.996 25 H 0.096 0.904 26 H 0.162 0.838 27 H 0.090 0.910 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.095 8.452 0.227 8.711 hybrid contribution -0.285 -2.175 -0.327 2.218 sum 1.810 6.277 -0.100 6.533 Atomic orbital electron populations 1.80936 1.13330 1.13183 1.08942 1.28967 0.95111 0.89512 0.92159 1.19182 0.82098 0.97350 0.92515 1.43606 1.54024 1.06658 1.10055 1.19883 1.32066 0.79318 1.11689 0.86823 1.25397 0.94867 1.01761 0.95065 1.69595 1.33447 1.36349 1.13277 0.85707 0.78785 0.80481 0.78192 1.19619 1.20621 1.19470 1.17712 0.86356 0.85056 0.84056 1.90673 1.49035 1.72788 1.33407 1.19207 0.92080 0.94067 1.05497 1.21552 0.95622 0.95772 0.94307 1.20914 0.99314 0.92560 1.02453 1.20467 0.88560 1.00485 0.95904 1.19886 0.94924 0.89461 1.10683 1.74808 0.98567 1.24412 1.12180 1.81511 1.17850 0.84094 1.15699 1.47665 1.07508 1.09921 1.55356 0.69894 1.19090 0.86034 0.95136 0.99336 0.90444 0.83777 0.90981 0.84330 0.84238 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.64 18.46 42.15 0.78 -9.86 16 2 C 0.26 5.37 10.45 -20.76 -0.22 5.15 16 3 C 0.22 4.12 4.77 -6.83 -0.03 4.09 16 4 N -0.43 -9.35 2.60 -119.18 -0.31 -9.66 16 5 C -0.30 -7.28 9.47 -15.00 -0.14 -7.43 16 6 H 0.11 2.86 7.21 -52.49 -0.38 2.48 16 7 C 0.03 0.73 5.36 -17.45 -0.09 0.63 16 8 N -0.89 -20.46 7.98 55.50 0.44 -20.02 16 9 Si 0.94 18.90 29.55 -169.99 -5.02 13.88 16 10 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 11 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 12 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 13 C 0.48 10.31 7.11 -12.53 -0.09 10.22 16 14 O -0.57 -14.03 16.67 5.25 0.09 -13.94 16 15 C -0.10 -1.80 4.57 -104.93 -0.48 -2.27 16 16 C -0.05 -0.78 7.81 -39.11 -0.31 -1.08 16 17 C -0.13 -1.63 9.98 -39.72 -0.40 -2.02 16 18 C -0.03 -0.39 10.09 -39.09 -0.39 -0.79 16 19 C -0.03 -0.40 7.26 -84.76 -0.62 -1.01 16 20 N -0.22 -3.56 12.40 32.15 0.40 -3.16 16 21 N -0.01 -0.16 13.83 60.35 0.83 0.67 16 22 N -0.48 -7.72 7.53 32.51 0.24 -7.48 16 23 H 0.45 6.66 8.96 -182.49 -1.64 5.02 16 24 C 0.13 2.18 7.05 -83.90 -0.59 1.59 16 25 H 0.08 1.24 6.14 -51.93 -0.32 0.92 16 26 H 0.15 2.86 6.28 -51.93 -0.33 2.53 16 27 H 0.28 6.33 8.31 -40.82 -0.34 5.99 16 28 H 0.14 2.35 5.43 -52.49 -0.29 2.07 16 29 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 272.73 15.07 4.11 4.11 Total: -1.00 -28.17 272.73 -4.72 -32.89 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -2.92 Total: 5.48 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -3.36 Total: 7.08 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 2.39 Total: -49.50 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.17 -4.72 -32.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525864058.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.533 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds