Wall clock time and date at job start Mon Mar 30 2020 00:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46970 * 298.14382 * 3 2 1 5 5 C 1.36877 * 119.99924 * 82.71077 * 4 3 2 6 6 H 1.07997 * 119.99699 * 167.45096 * 5 4 3 7 7 C 1.39037 * 119.99716 * 347.44442 * 5 4 3 8 8 N 1.31367 * 120.00585 * 0.07161 * 7 5 4 9 9 Si 1.86804 * 119.99875 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46879 * 60.00554 * 9 7 5 11 11 H 1.48496 * 109.47311 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47098 * 300.00655 * 9 7 5 13 13 C 1.34779 * 120.00153 * 262.70223 * 4 3 2 14 14 O 1.21627 * 119.99708 * 185.27713 * 13 4 3 15 15 C 1.47399 * 119.99715 * 5.01056 * 13 4 3 16 16 C 1.39331 * 120.25450 * 51.91521 * 15 13 4 17 17 C 1.38420 * 120.27017 * 179.72627 * 16 15 13 18 18 C 1.37672 * 120.80055 * 0.57844 * 17 16 15 19 19 C 1.40102 * 120.16811 * 359.70424 * 18 17 16 20 20 N 1.35393 * 133.02861 * 180.02562 * 19 18 17 21 21 N 1.28657 * 110.10422 * 179.97438 * 20 19 18 22 22 N 1.40248 * 109.43164 * 0.02562 * 21 20 19 23 23 H 0.96996 * 126.66851 * 180.02562 * 22 21 20 24 24 C 1.36972 * 106.66806 * 359.97438 * 22 21 20 25 25 H 1.08997 * 109.47017 * 178.14412 * 3 2 1 26 26 H 1.08996 * 109.46865 * 58.14570 * 3 2 1 27 27 H 0.96996 * 120.00658 * 179.97438 * 8 7 5 28 28 H 1.07993 * 119.86380 * 0.03037 * 16 15 13 29 29 H 1.07992 * 119.60073 * 180.28272 * 17 16 15 30 30 H 1.07998 * 119.90996 * 179.67876 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0966 -0.6506 1.2179 5 6 3.1835 -2.0154 1.2764 6 1 3.7260 -2.4878 2.0820 7 6 2.5734 -2.7933 0.2989 8 7 1.9146 -2.2186 -0.6817 9 14 2.6913 -4.6559 0.3791 10 1 2.0876 -5.1359 1.6481 11 1 1.9626 -5.2481 -0.7713 12 1 4.1180 -5.0644 0.3241 13 6 3.4607 0.0940 2.2807 14 8 3.9559 -0.4388 3.2555 15 6 3.2641 1.5547 2.2592 16 6 2.0183 2.0907 1.9401 17 6 1.8318 3.4622 1.9254 18 6 2.8713 4.3181 2.2124 19 6 4.1364 3.8073 2.5309 20 7 5.3154 4.3919 2.8493 21 7 6.2107 3.4934 3.0643 22 7 5.6460 2.2213 2.8914 23 1 6.0973 1.3686 2.9921 24 6 4.3330 2.4169 2.5540 25 1 2.9709 1.0279 -0.0333 26 1 2.9716 -0.5415 -0.8729 27 1 1.4893 -2.7613 -1.3639 28 1 1.1934 1.4334 1.7082 29 1 0.8604 3.8659 1.6811 30 1 2.7110 5.3859 2.1917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525864058.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:55 Heat of formation + Delta-G solvation = 106.825530 kcal Electronic energy + Delta-G solvation = -20160.362221 eV Core-core repulsion = 16958.063025 eV Total energy + Delta-G solvation = -3202.299196 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.18707 -40.87084 -38.26528 -37.75268 -36.16530 -34.59355 -33.83346 -31.56568 -31.11528 -29.28068 -27.08975 -25.27261 -24.20751 -23.46555 -21.50997 -19.94555 -19.19395 -18.91692 -18.02714 -17.71951 -16.80848 -16.71523 -16.40960 -16.02019 -15.63841 -15.08341 -14.94645 -14.72227 -13.84472 -13.55061 -13.32580 -13.25191 -13.18791 -12.99750 -12.98369 -12.90853 -12.41922 -12.32274 -12.23576 -12.17045 -12.12357 -11.22183 -10.68928 -10.15517 -9.98430 -9.40631 -8.43343 -6.09193 -0.75409 0.21080 0.92825 1.34547 1.38286 1.43013 1.51326 1.78957 1.92070 2.24076 2.34495 2.54121 2.88052 2.96304 3.10745 3.52472 3.63673 3.77718 3.79496 3.96464 4.17386 4.44913 4.54828 4.71086 4.88679 5.03569 5.18396 5.27990 5.37029 5.61249 5.82988 5.88452 6.27048 6.82020 6.95605 7.03307 7.18844 7.70916 8.50317 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.006509 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.478177 B = 4300.612049 C = 5097.183714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.271 3.729 3 C 0.221 3.779 4 N -0.437 5.437 5 C -0.332 4.332 6 H 0.092 0.908 7 C 0.006 3.994 8 N -0.893 5.893 9 Si 0.993 3.007 10 H -0.281 1.281 11 H -0.275 1.275 12 H -0.263 1.263 13 C 0.482 3.518 14 O -0.614 6.614 15 C -0.128 4.128 16 C -0.039 4.039 17 C -0.121 4.121 18 C -0.004 4.004 19 C -0.035 4.035 20 N -0.222 5.222 21 N -0.017 5.017 22 N -0.485 5.485 23 H 0.454 0.546 24 C 0.116 3.884 25 H 0.112 0.888 26 H 0.139 0.861 27 H 0.278 0.722 28 H 0.125 0.875 29 H 0.181 0.819 30 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 9.976 -1.029 10.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.046 4.046 3 C 0.095 3.905 4 N -0.154 5.154 5 C -0.459 4.459 6 H 0.110 0.890 7 C -0.195 4.195 8 N -0.533 5.533 9 Si 0.817 3.183 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.188 1.188 13 C 0.272 3.728 14 O -0.501 6.501 15 C -0.136 4.136 16 C -0.062 4.062 17 C -0.141 4.141 18 C -0.026 4.026 19 C -0.159 4.159 20 N -0.102 5.102 21 N 0.001 4.999 22 N -0.208 5.208 23 H 0.302 0.698 24 C -0.008 4.008 25 H 0.130 0.870 26 H 0.156 0.844 27 H 0.089 0.911 28 H 0.143 0.857 29 H 0.198 0.802 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.293 10.451 -0.418 10.539 hybrid contribution -0.053 -2.677 -0.090 2.679 sum 1.240 7.774 -0.508 7.889 Atomic orbital electron populations 1.80930 1.14026 1.14090 1.09787 1.29200 0.95310 0.88706 0.91348 1.19266 0.81195 0.98911 0.91131 1.43699 1.54435 1.06220 1.11073 1.19788 1.33376 0.80788 1.11946 0.89049 1.25939 0.94335 1.04612 0.94598 1.69684 1.33362 1.37023 1.13231 0.84963 0.78946 0.76802 0.77605 1.20712 1.19942 1.18774 1.18302 0.84675 0.86696 0.83140 1.90629 1.50398 1.74232 1.34793 1.18847 0.93653 0.91668 1.09406 1.21590 0.94027 0.97374 0.93179 1.21270 1.01058 0.90655 1.01137 1.20995 0.86683 1.02615 0.92355 1.20301 0.95893 0.88708 1.11037 1.74783 0.98843 1.24459 1.12091 1.81495 1.18022 0.84134 1.16213 1.47718 1.07571 1.10042 1.55447 0.69752 1.19200 0.86044 0.95854 0.99741 0.86994 0.84400 0.91068 0.85676 0.80205 0.80131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -21.87 18.46 20.01 0.37 -21.50 16 2 C 0.27 10.99 10.45 89.44 0.93 11.93 16 3 C 0.22 8.35 4.77 84.58 0.40 8.76 16 4 N -0.44 -19.48 2.60 -649.20 -1.69 -21.17 16 5 C -0.33 -16.41 9.47 84.10 0.80 -15.61 16 6 H 0.09 4.83 7.21 -2.91 -0.02 4.81 16 7 C 0.01 0.30 5.36 84.95 0.46 0.75 16 8 N -0.89 -41.08 7.98 21.68 0.17 -40.90 16 9 Si 0.99 38.93 29.55 68.60 2.03 40.95 16 10 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 12 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 13 C 0.48 21.10 7.11 86.66 0.62 21.71 16 14 O -0.61 -31.09 16.67 -4.12 -0.07 -31.16 16 15 C -0.13 -4.46 4.57 -20.06 -0.09 -4.55 16 16 C -0.04 -1.13 7.81 22.58 0.18 -0.95 16 17 C -0.12 -2.43 9.98 22.18 0.22 -2.21 16 18 C 0.00 -0.09 10.09 22.59 0.23 0.14 16 19 C -0.04 -1.00 7.26 39.59 0.29 -0.71 16 20 N -0.22 -6.72 12.40 -52.20 -0.65 -7.37 16 21 N -0.02 -0.54 13.83 37.02 0.51 -0.03 16 22 N -0.48 -15.46 7.53 -51.07 -0.38 -15.84 16 23 H 0.45 13.75 8.96 -213.23 -1.91 11.84 16 24 C 0.12 3.80 7.05 39.42 0.28 4.08 16 25 H 0.11 3.41 6.14 -2.39 -0.01 3.40 16 26 H 0.14 5.43 6.28 -2.39 -0.02 5.42 16 27 H 0.28 12.50 8.31 -92.71 -0.77 11.73 16 28 H 0.13 4.04 5.43 -2.91 -0.02 4.02 16 29 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -61.67 272.73 3.92 -57.75 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -0.67 Total: 15.94 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 4.31 Total: 23.33 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -1.67 Total: -106.82 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.07 Total: -31.16 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.95 kcal Total: -61.67 3.92 -57.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525864058.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.575 kcal (2) G-P(sol) polarization free energy of solvation -61.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds