Wall clock time and date at job start Mon Mar 30 2020 01:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00036 * 2 1 4 4 H 1.48499 * 109.47233 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47102 * 300.00339 * 3 2 1 6 6 H 1.48503 * 109.46873 * 60.00424 * 3 2 1 7 7 C 1.38810 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00320 * 164.24404 * 7 2 1 9 9 N 1.36938 * 119.99970 * 344.24654 * 7 2 1 10 10 C 1.47221 * 121.32749 * 155.32069 * 9 7 2 11 11 C 1.52770 * 107.94260 * 115.91448 * 10 9 7 12 12 C 1.50598 * 110.86003 * 47.50150 * 11 10 9 13 13 C 1.38976 * 117.63029 * 160.09602 * 12 11 10 14 14 C 1.37911 * 120.57879 * 179.04047 * 13 12 11 15 15 C 1.38267 * 119.82552 * 359.50405 * 14 13 12 16 16 C 1.37953 * 119.71790 * 0.77251 * 15 14 13 17 17 C 1.50704 * 119.75140 * 179.75748 * 16 15 14 18 18 F 1.39906 * 109.46795 * 359.97438 * 17 16 15 19 19 F 1.39901 * 109.47260 * 119.98052 * 17 16 15 20 20 F 1.39895 * 109.47433 * 239.98398 * 17 16 15 21 21 C 1.37671 * 122.84811 * 339.41529 * 12 11 10 22 22 C 1.46684 * 121.31824 * 335.33746 * 9 7 2 23 23 H 0.97004 * 119.99728 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.76449 * 235.52835 * 10 9 7 25 25 H 1.08999 * 109.76532 * 356.30138 * 10 9 7 26 26 H 1.08999 * 109.19808 * 287.15205 * 11 10 9 27 27 H 1.08997 * 109.20177 * 167.86039 * 11 10 9 28 28 H 1.07998 * 119.71240 * 358.76513 * 13 12 11 29 29 H 1.08004 * 120.08578 * 179.75393 * 14 13 12 30 30 H 1.08005 * 120.14127 * 180.54294 * 15 14 13 31 31 H 1.08999 * 109.43439 * 104.42717 * 22 9 7 32 32 H 1.09000 * 109.43865 * 344.54726 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0598 -1.2196 -0.2545 9 7 1.3642 -2.3659 0.3209 10 6 1.8507 -3.6695 -0.1602 11 6 2.2708 -4.4931 1.0560 12 6 1.2118 -4.4482 2.1258 13 6 1.2270 -5.4488 3.0902 14 6 0.2976 -5.4554 4.1090 15 6 -0.6525 -4.4533 4.1797 16 6 -0.6736 -3.4621 3.2205 17 6 -1.7122 -2.3725 3.2938 18 9 -2.5302 -2.5824 4.4092 19 9 -1.0781 -1.1306 3.4074 20 9 -2.4926 -2.3932 2.1329 21 6 0.2549 -3.4604 2.1883 22 6 0.1597 -2.3632 1.1580 23 1 -0.4850 0.8401 0.0004 24 1 1.0543 -4.1847 -0.6972 25 1 2.7061 -3.5231 -0.8197 26 1 3.2018 -4.0919 1.4563 27 1 2.4288 -5.5276 0.7512 28 1 1.9704 -6.2305 3.0388 29 1 0.3143 -6.2391 4.8520 30 1 -1.3773 -4.4487 4.9805 31 1 -0.7173 -2.5284 0.5322 32 1 0.0696 -1.4003 1.6608 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528793519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:09 Heat of formation + Delta-G solvation = -104.656218 kcal Electronic energy + Delta-G solvation = -21660.451284 eV Core-core repulsion = 17978.372403 eV Total energy + Delta-G solvation = -3682.078881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.64411 -47.20822 -46.99245 -39.53092 -35.98143 -33.09964 -31.98317 -30.25013 -28.90501 -26.05451 -25.03777 -23.21701 -22.28649 -21.24195 -19.19484 -17.91051 -17.87485 -17.50316 -16.67813 -15.66395 -14.86930 -14.71146 -14.46459 -14.02851 -13.89501 -13.67303 -13.62536 -13.41552 -13.19253 -13.10521 -12.87371 -12.57196 -12.25436 -12.03524 -11.66443 -11.40747 -11.05905 -10.89745 -10.78645 -10.37257 -10.24992 -9.91552 -9.84104 -8.80664 -8.57745 -8.06109 -6.82690 -5.83751 -3.25162 1.30416 1.67035 3.19388 3.37378 3.44754 3.46716 3.83764 4.23684 4.45602 4.56290 4.97559 5.08293 5.12458 5.25971 5.30458 5.43729 5.64651 5.66950 5.88508 5.99910 6.05951 6.22172 6.36848 6.52396 6.52978 6.72482 6.76963 6.88562 7.06391 7.21433 7.48753 7.74660 8.32231 9.12174 9.75265 10.32139 11.26477 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.008999 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.353921 B = 3110.746906 C = 4196.972189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.255 4.255 8 H 0.072 0.928 9 N -0.591 5.591 10 C 0.140 3.860 11 C -0.098 4.098 12 C -0.071 4.071 13 C -0.096 4.096 14 C -0.143 4.143 15 C -0.083 4.083 16 C -0.191 4.191 17 C 0.509 3.491 18 F -0.189 7.189 19 F -0.168 7.168 20 F -0.172 7.172 21 C -0.028 4.028 22 C 0.182 3.818 23 H 0.256 0.744 24 H 0.028 0.972 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.053 0.947 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 -9.865 7.173 12.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.384 4.384 8 H 0.090 0.910 9 N -0.313 5.313 10 C 0.013 3.987 11 C -0.137 4.137 12 C -0.072 4.072 13 C -0.114 4.114 14 C -0.161 4.161 15 C -0.101 4.101 16 C -0.193 4.193 17 C 0.455 3.545 18 F -0.171 7.171 19 F -0.149 7.149 20 F -0.153 7.153 21 C -0.030 4.030 22 C 0.056 3.944 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.070 0.930 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.804 -9.647 7.132 12.024 hybrid contribution 0.132 0.993 0.182 1.018 sum -0.672 -8.654 7.313 11.350 Atomic orbital electron populations 1.69988 1.05174 1.25768 1.53620 1.25046 0.95411 0.98474 1.00606 0.86196 0.79263 0.83790 0.77382 1.20213 1.21592 1.21411 1.19186 0.92418 0.84118 1.42713 0.91023 1.43951 1.30126 1.01621 1.55561 1.20935 0.97768 0.87188 0.92796 1.21004 0.96442 1.00135 0.96105 1.19591 0.96710 0.93785 0.97076 1.21397 0.98008 0.98030 0.93999 1.20850 0.96462 0.99181 0.99563 1.20813 0.98643 0.93310 0.97324 1.19961 0.99904 0.98265 1.01172 1.18304 0.80711 0.82190 0.73300 1.93099 1.74997 1.94935 1.54029 1.93227 1.81608 1.44576 1.95504 1.93221 1.76325 1.96582 1.49157 1.20877 0.90929 0.96730 0.94430 1.20248 0.90050 0.94812 0.89286 0.93356 0.95424 0.91705 0.90763 0.91721 0.86028 0.85746 0.85255 0.92964 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 11.10 55.49 0.62 -25.53 16 2 C 0.00 0.10 4.99 -17.43 -0.09 0.01 16 3 Si 0.90 21.77 29.58 -169.99 -5.03 16.74 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.26 -6.95 9.69 -15.06 -0.15 -7.10 16 8 H 0.07 1.89 7.88 -52.49 -0.41 1.48 16 9 N -0.59 -14.84 2.97 -173.96 -0.52 -15.36 16 10 C 0.14 2.84 6.52 -3.77 -0.02 2.82 16 11 C -0.10 -1.66 5.87 -28.05 -0.16 -1.83 16 12 C -0.07 -1.29 5.76 -104.60 -0.60 -1.89 16 13 C -0.10 -1.40 9.59 -39.43 -0.38 -1.78 16 14 C -0.14 -1.94 10.04 -39.69 -0.40 -2.33 16 15 C -0.08 -1.26 9.42 -39.67 -0.37 -1.64 16 16 C -0.19 -3.57 5.38 -104.50 -0.56 -4.13 16 17 C 0.51 9.77 2.85 36.01 0.10 9.87 16 18 F -0.19 -3.18 15.95 2.25 0.04 -3.14 16 19 F -0.17 -3.60 15.31 2.25 0.03 -3.56 16 20 F -0.17 -3.51 15.85 2.25 0.04 -3.47 16 21 C -0.03 -0.57 5.80 -104.55 -0.61 -1.18 16 22 C 0.18 4.46 3.61 -5.04 -0.02 4.44 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 1.25 7.96 -51.93 -0.41 0.83 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 28 H 0.12 1.40 8.05 -52.49 -0.42 0.98 16 29 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.13 1.67 7.14 -52.48 -0.37 1.30 16 31 H 0.05 1.39 7.42 -51.93 -0.39 1.00 16 32 H 0.11 3.08 4.28 -51.93 -0.22 2.85 16 LS Contribution 275.12 15.07 4.15 4.15 Total: -1.00 -29.56 275.12 -6.99 -36.55 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -3.06 Total: -1.64 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -3.26 Total: -4.74 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.10 Total: -40.89 kcal Atomic # 9 Polarization: -10.28 SS G_CDS: 0.11 Total: -10.17 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.56 -6.99 -36.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528793519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.101 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds