Wall clock time and date at job start Mon Mar 30 2020 01:10:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53003 * 109.47302 * 2 1
4 4 H 1.09002 * 109.46525 * 304.24754 * 3 2 1
5 5 C 1.50695 * 109.46981 * 184.24886 * 3 2 1
6 6 H 1.07995 * 120.00300 * 239.99586 * 5 3 2
7 7 C 1.37878 * 120.00128 * 59.99851 * 5 3 2
8 8 N 1.31518 * 120.00114 * 0.02562 * 7 5 3
9 9 Si 1.86796 * 120.00079 * 179.97438 * 7 5 3
10 10 H 1.48496 * 109.47313 * 0.02562 * 9 7 5
11 11 H 1.48495 * 109.47182 * 120.00197 * 9 7 5
12 12 H 1.48504 * 109.47517 * 240.00195 * 9 7 5
13 13 N 1.46897 * 109.47366 * 64.24497 * 3 2 1
14 14 C 1.46897 * 111.00344 * 205.88844 * 13 3 2
15 15 C 1.50704 * 109.47138 * 174.79579 * 14 13 3
16 16 C 1.38205 * 119.99454 * 260.02408 * 15 14 13
17 17 C 1.38437 * 119.98790 * 180.02562 * 16 15 14
18 18 F 1.35097 * 120.01331 * 179.97438 * 17 16 15
19 19 C 1.38478 * 119.97537 * 0.02562 * 17 16 15
20 20 C 1.38175 * 119.98640 * 359.97314 * 19 17 16
21 21 C 1.38333 * 119.99117 * 80.00091 * 15 14 13
22 22 Cl 1.73601 * 119.98653 * 359.72641 * 21 15 14
23 23 H 1.08998 * 109.47028 * 294.87526 * 1 2 3
24 24 H 1.08998 * 109.47000 * 54.86971 * 1 2 3
25 25 H 1.08998 * 109.47372 * 174.86923 * 1 2 3
26 26 H 1.09000 * 109.47087 * 239.99634 * 2 1 3
27 27 H 1.08999 * 109.46977 * 119.99633 * 2 1 3
28 28 H 0.96997 * 120.00135 * 179.97438 * 8 7 5
29 29 H 1.00907 * 110.99854 * 81.93447 * 13 3 2
30 30 H 1.09004 * 109.46696 * 54.80035 * 14 13 3
31 31 H 1.08997 * 109.47000 * 294.80228 * 14 13 3
32 32 H 1.08000 * 120.00886 * 359.97438 * 16 15 14
33 33 H 1.07996 * 120.00842 * 179.97438 * 19 17 16
34 34 H 1.07995 * 119.99051 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6159 1.9778 -0.8495
5 6 3.5434 1.4437 -0.1053
6 1 4.1391 1.8917 0.6762
7 6 4.1583 0.8730 -1.1994
8 7 3.4329 0.3279 -2.1514
9 14 6.0217 0.8751 -1.3302
10 1 6.6008 1.5453 -0.1383
11 1 6.5147 -0.5239 -1.3992
12 1 6.4311 1.6052 -2.5569
13 7 1.6360 2.1048 1.2474
14 6 1.5389 3.5590 1.0638
15 6 1.0009 4.1894 2.3225
16 6 -0.3333 4.5408 2.4034
17 6 -0.8274 5.1203 3.5595
18 9 -2.1314 5.4644 3.6389
19 6 0.0158 5.3482 4.6341
20 6 1.3496 4.9965 4.5520
21 6 1.8424 4.4159 3.3968
22 17 3.5165 3.9673 3.2972
23 1 -0.3633 0.4323 0.9323
24 1 -0.3633 0.5913 -0.8405
25 1 -0.3634 -1.0235 -0.0919
26 1 1.8934 -0.5139 -0.8900
27 1 1.8933 -0.5138 0.8900
28 1 3.8655 -0.0733 -2.9213
29 1 2.2689 1.8767 1.9994
30 1 0.8676 3.7763 0.2330
31 1 2.5273 3.9647 0.8480
32 1 -0.9903 4.3640 1.5646
33 1 -0.3689 5.8007 5.5360
34 1 2.0071 5.1738 5.3902
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000566429115.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:10:19
Heat of formation + Delta-G solvation = -41.023035 kcal
Electronic energy + Delta-G solvation = -18394.719349 eV
Core-core repulsion = 15267.196490 eV
Total energy + Delta-G solvation = -3127.522858 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.083 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-48.93755 -39.29170 -36.24503 -36.16185 -33.17825 -31.59383 -30.55221 -29.82103
-26.68819 -24.60748 -22.84774 -22.58707 -21.16014 -19.51592 -17.30441 -16.87944
-16.52297 -16.37318 -15.65891 -14.87253 -14.47852 -14.12643 -13.74469 -13.66116
-13.27894 -13.01368 -12.70848 -12.37204 -11.97143 -11.76830 -11.39902 -11.27088
-11.10627 -11.07198 -10.87359 -10.66587 -10.54903 -10.16742 -9.61986 -9.59212
-9.06898 -9.01005 -8.47826 -8.39686 -7.32047 -6.01318 -4.13517 0.97930
1.13152 2.26745 3.25007 3.33915 3.37123 3.43450 4.16198 4.38718
4.61881 4.73159 5.03778 5.21026 5.24908 5.57351 5.66201 5.78142
5.80746 5.99746 6.09466 6.34286 6.39868 6.50166 6.53568 6.70295
6.73041 7.10351 7.16359 7.40504 7.56197 7.76748 8.05155 8.10894
8.27947 8.60433 8.98204 9.54186 10.99252
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.021650 B = 0.005673 C = 0.004734
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1292.995299 B = 4934.369876 C = 5913.592568
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.106 4.106
3 C 0.215 3.785
4 H 0.033 0.967
5 C -0.543 4.543
6 H 0.056 0.944
7 C 0.068 3.932
8 N -0.885 5.885
9 Si 0.886 3.114
10 H -0.275 1.275
11 H -0.284 1.284
12 H -0.284 1.284
13 N -0.681 5.681
14 C 0.095 3.905
15 C -0.024 4.024
16 C -0.129 4.129
17 C 0.099 3.901
18 F -0.140 7.140
19 C -0.154 4.154
20 C -0.084 4.084
21 C -0.046 4.046
22 Cl -0.053 7.053
23 H 0.046 0.954
24 H 0.036 0.964
25 H 0.024 0.976
26 H 0.091 0.909
27 H 0.030 0.970
28 H 0.261 0.739
29 H 0.332 0.668
30 H 0.076 0.924
31 H 0.052 0.948
32 H 0.144 0.856
33 H 0.139 0.861
34 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.387 8.797 10.938 15.035
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.144 4.144
3 C 0.108 3.892
4 H 0.051 0.949
5 C -0.582 4.582
6 H 0.074 0.926
7 C -0.134 4.134
8 N -0.523 5.523
9 Si 0.714 3.286
10 H -0.199 1.199
11 H -0.210 1.210
12 H -0.210 1.210
13 N -0.311 5.311
14 C -0.035 4.035
15 C -0.026 4.026
16 C -0.148 4.148
17 C 0.080 3.920
18 F -0.118 7.118
19 C -0.174 4.174
20 C -0.103 4.103
21 C -0.074 4.074
22 Cl -0.024 7.024
23 H 0.065 0.935
24 H 0.056 0.944
25 H 0.043 0.957
26 H 0.109 0.891
27 H 0.049 0.951
28 H 0.071 0.929
29 H 0.149 0.851
30 H 0.094 0.906
31 H 0.070 0.930
32 H 0.162 0.838
33 H 0.157 0.843
34 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -5.941 8.555 10.621 14.875
hybrid contribution 1.916 0.218 -0.156 1.935
sum -4.024 8.772 10.465 14.236
Atomic orbital electron populations
1.21691 0.98981 0.98326 1.00352 1.21498 0.92087 0.99085 1.01758
1.19189 0.92927 0.91181 0.85931 0.94882 1.21893 0.92579 1.37882
1.05850 0.92584 1.24915 0.97869 0.94995 0.95668 1.69884 1.34766
1.38153 1.09538 0.86630 0.86226 0.77757 0.77943 1.19933 1.20963
1.21039 1.61012 1.55646 1.04071 1.10342 1.20856 0.99859 0.91108
0.91660 1.19923 0.91877 0.94891 0.95866 1.21023 0.95527 1.00460
0.97802 1.17734 0.78433 1.00203 0.95639 1.91495 1.33538 1.90070
1.96729 1.20968 0.93305 1.04305 0.98782 1.20835 0.94919 0.97725
0.96807 1.20952 0.87054 1.03365 0.96022 1.98406 1.14697 1.91096
1.98164 0.93494 0.94441 0.95664 0.89064 0.95066 0.92940 0.85148
0.90574 0.93003 0.83848 0.84330 0.84308
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.76 9.73 37.16 0.36 -2.40 16
2 C -0.11 -2.49 5.45 -26.73 -0.15 -2.63 16
3 C 0.22 5.15 1.98 -68.87 -0.14 5.02 16
4 H 0.03 0.87 7.70 -51.93 -0.40 0.47 16
5 C -0.54 -14.24 8.47 -34.44 -0.29 -14.53 16
6 H 0.06 1.47 7.73 -52.49 -0.41 1.07 16
7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16
8 N -0.88 -24.57 11.30 55.43 0.63 -23.95 16
9 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16
10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16
11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
13 N -0.68 -13.84 5.72 -109.22 -0.62 -14.46 16
14 C 0.09 1.70 5.08 -4.98 -0.03 1.67 16
15 C -0.02 -0.37 5.44 -104.60 -0.57 -0.94 16
16 C -0.13 -1.77 9.65 -39.52 -0.38 -2.15 16
17 C 0.10 1.26 7.30 -39.42 -0.29 0.98 16
18 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16
19 C -0.15 -1.71 10.03 -39.52 -0.40 -2.11 16
20 C -0.08 -0.97 9.83 -39.55 -0.39 -1.36 16
21 C -0.05 -0.66 6.31 -39.50 -0.25 -0.91 16
22 Cl -0.05 -0.80 26.72 -51.86 -1.39 -2.18 16
23 H 0.05 0.91 7.88 -51.93 -0.41 0.50 16
24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16
25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
26 H 0.09 2.40 5.97 -51.93 -0.31 2.09 16
27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16
29 H 0.33 6.85 7.62 -39.29 -0.30 6.55 16
30 H 0.08 1.34 7.79 -51.93 -0.40 0.94 16
31 H 0.05 1.00 7.33 -51.93 -0.38 0.62 16
32 H 0.14 1.85 8.04 -52.49 -0.42 1.43 16
33 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16
34 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16
LS Contribution 305.33 15.07 4.60 4.60
Total: -1.00 -26.95 305.33 -8.65 -35.59
By element:
Atomic # 1 Polarization: 8.15 SS G_CDS: -4.28 Total: 3.87 kcal
Atomic # 6 Polarization: -15.03 SS G_CDS: -2.60 Total: -17.63 kcal
Atomic # 7 Polarization: -38.41 SS G_CDS: 0.00 Total: -38.41 kcal
Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal
Atomic # 17 Polarization: -0.80 SS G_CDS: -1.39 Total: -2.18 kcal
Total LS contribution 4.60 Total: 4.60 kcal
Total: -26.95 -8.65 -35.59 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000566429115.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.429 kcal
(2) G-P(sol) polarization free energy of solvation -26.945 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.374 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.023 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds