Wall clock time and date at job start Mon Mar 30 2020 01:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47302 * 2 1 4 4 H 1.09002 * 109.46525 * 304.24754 * 3 2 1 5 5 C 1.50695 * 109.46981 * 184.24886 * 3 2 1 6 6 H 1.07995 * 120.00300 * 239.99586 * 5 3 2 7 7 C 1.37878 * 120.00128 * 59.99851 * 5 3 2 8 8 N 1.31518 * 120.00114 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00079 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47313 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47182 * 120.00197 * 9 7 5 12 12 H 1.48504 * 109.47517 * 240.00195 * 9 7 5 13 13 N 1.46897 * 109.47366 * 64.24497 * 3 2 1 14 14 C 1.46897 * 111.00344 * 205.88844 * 13 3 2 15 15 C 1.50704 * 109.47138 * 174.79579 * 14 13 3 16 16 C 1.38205 * 119.99454 * 260.02408 * 15 14 13 17 17 C 1.38437 * 119.98790 * 180.02562 * 16 15 14 18 18 F 1.35097 * 120.01331 * 179.97438 * 17 16 15 19 19 C 1.38478 * 119.97537 * 0.02562 * 17 16 15 20 20 C 1.38175 * 119.98640 * 359.97314 * 19 17 16 21 21 C 1.38333 * 119.99117 * 80.00091 * 15 14 13 22 22 Cl 1.73601 * 119.98653 * 359.72641 * 21 15 14 23 23 H 1.08998 * 109.47028 * 294.87526 * 1 2 3 24 24 H 1.08998 * 109.47000 * 54.86971 * 1 2 3 25 25 H 1.08998 * 109.47372 * 174.86923 * 1 2 3 26 26 H 1.09000 * 109.47087 * 239.99634 * 2 1 3 27 27 H 1.08999 * 109.46977 * 119.99633 * 2 1 3 28 28 H 0.96997 * 120.00135 * 179.97438 * 8 7 5 29 29 H 1.00907 * 110.99854 * 81.93447 * 13 3 2 30 30 H 1.09004 * 109.46696 * 54.80035 * 14 13 3 31 31 H 1.08997 * 109.47000 * 294.80228 * 14 13 3 32 32 H 1.08000 * 120.00886 * 359.97438 * 16 15 14 33 33 H 1.07996 * 120.00842 * 179.97438 * 19 17 16 34 34 H 1.07995 * 119.99051 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6159 1.9778 -0.8495 5 6 3.5434 1.4437 -0.1053 6 1 4.1391 1.8917 0.6762 7 6 4.1583 0.8730 -1.1994 8 7 3.4329 0.3279 -2.1514 9 14 6.0217 0.8751 -1.3302 10 1 6.6008 1.5453 -0.1383 11 1 6.5147 -0.5239 -1.3992 12 1 6.4311 1.6052 -2.5569 13 7 1.6360 2.1048 1.2474 14 6 1.5389 3.5590 1.0638 15 6 1.0009 4.1894 2.3225 16 6 -0.3333 4.5408 2.4034 17 6 -0.8274 5.1203 3.5595 18 9 -2.1314 5.4644 3.6389 19 6 0.0158 5.3482 4.6341 20 6 1.3496 4.9965 4.5520 21 6 1.8424 4.4159 3.3968 22 17 3.5165 3.9673 3.2972 23 1 -0.3633 0.4323 0.9323 24 1 -0.3633 0.5913 -0.8405 25 1 -0.3634 -1.0235 -0.0919 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8655 -0.0733 -2.9213 29 1 2.2689 1.8767 1.9994 30 1 0.8676 3.7763 0.2330 31 1 2.5273 3.9647 0.8480 32 1 -0.9903 4.3640 1.5646 33 1 -0.3689 5.8007 5.5360 34 1 2.0071 5.1738 5.3902 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566429115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:19 Heat of formation + Delta-G solvation = -54.968190 kcal Electronic energy + Delta-G solvation = -18395.324056 eV Core-core repulsion = 15267.196490 eV Total energy + Delta-G solvation = -3128.127566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.93415 -40.38358 -37.89660 -37.36120 -34.80336 -33.38754 -31.80049 -31.05093 -28.46097 -26.16624 -24.34037 -23.87363 -22.36887 -21.38814 -18.78684 -18.27456 -17.63815 -17.53627 -16.83040 -16.63137 -15.98821 -15.57173 -15.14500 -14.87927 -14.66229 -14.44365 -14.02461 -13.75053 -13.48706 -13.20179 -13.05097 -13.02907 -12.77191 -12.50201 -12.36191 -12.21748 -12.07572 -11.74560 -11.49094 -11.37994 -10.97464 -10.45327 -10.08073 -9.54859 -9.06731 -8.04662 -6.24925 -0.06033 0.12380 1.16852 1.36291 1.39942 1.48990 2.39106 2.41660 3.13123 3.17240 3.56827 3.69944 3.94827 4.12247 4.19707 4.44890 4.59724 4.64336 4.77667 4.82750 4.90615 4.95042 5.02457 5.07782 5.18278 5.32434 5.43610 5.53739 5.64092 5.72662 5.78008 6.11436 6.19703 6.36698 6.77755 7.00628 7.45925 8.92708 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.005673 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.995299 B = 4934.369876 C = 5913.592568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.222 3.778 4 H 0.004 0.996 5 C -0.552 4.552 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.672 5.672 14 C 0.101 3.899 15 C -0.042 4.042 16 C -0.134 4.134 17 C 0.095 3.905 18 F -0.140 7.140 19 C -0.136 4.136 20 C -0.075 4.075 21 C -0.056 4.056 22 Cl -0.068 7.068 23 H 0.056 0.944 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.026 0.974 28 H 0.261 0.739 29 H 0.331 0.669 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.146 0.854 33 H 0.174 0.826 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 9.654 12.892 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.592 4.592 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.301 5.301 14 C -0.029 4.029 15 C -0.044 4.044 16 C -0.153 4.153 17 C 0.076 3.924 18 F -0.118 7.118 19 C -0.155 4.155 20 C -0.094 4.094 21 C -0.083 4.083 22 Cl -0.039 7.039 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.163 0.837 33 H 0.192 0.808 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.348 9.422 12.586 16.955 hybrid contribution 1.977 0.015 -0.711 2.101 sum -4.371 9.436 11.875 15.785 Atomic orbital electron populations 1.21545 0.96370 0.99534 1.00637 1.21362 0.94404 0.98305 1.00031 1.18962 0.91687 0.91490 0.86490 0.97764 1.22164 0.93898 1.37435 1.05654 0.93076 1.25592 1.01682 0.94923 0.95561 1.70001 1.36193 1.38825 1.09944 0.85723 0.81671 0.77714 0.77816 1.19699 1.20623 1.20787 1.60922 1.54925 1.05675 1.08559 1.20732 0.99062 0.89590 0.93491 1.19598 0.92782 0.96809 0.95169 1.21035 0.94951 1.00663 0.98662 1.17816 0.78671 1.00165 0.95739 1.91501 1.33575 1.90032 1.96706 1.21348 0.92557 1.02393 0.99194 1.21148 0.95556 0.96227 0.96458 1.21105 0.86209 1.04183 0.96802 1.98401 1.15930 1.91338 1.98240 0.92535 0.94857 0.93841 0.91940 0.95502 0.92943 0.85245 0.90987 0.94773 0.83660 0.80831 0.81406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 9.73 71.98 0.70 -4.24 16 2 C -0.10 -4.88 5.45 30.60 0.17 -4.72 16 3 C 0.22 10.89 1.98 44.17 0.09 10.98 16 4 H 0.00 0.24 7.70 -2.39 -0.02 0.22 16 5 C -0.55 -29.49 8.47 25.60 0.22 -29.28 16 6 H 0.05 2.73 7.73 -2.91 -0.02 2.70 16 7 C 0.02 1.22 5.29 84.65 0.45 1.66 16 8 N -0.91 -51.54 11.30 21.45 0.24 -51.29 16 9 Si 0.94 43.36 29.54 68.60 2.03 45.39 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.67 -27.60 5.72 -499.47 -2.86 -30.45 16 14 C 0.10 3.67 5.08 85.56 0.43 4.11 16 15 C -0.04 -1.26 5.44 -19.85 -0.11 -1.36 16 16 C -0.13 -3.52 9.65 22.31 0.22 -3.31 16 17 C 0.10 2.18 7.30 22.37 0.16 2.34 16 18 F -0.14 -3.23 17.27 44.97 0.78 -2.45 16 19 C -0.14 -2.49 10.03 22.31 0.22 -2.26 16 20 C -0.08 -1.50 9.83 22.29 0.22 -1.28 16 21 C -0.06 -1.50 6.31 22.32 0.14 -1.36 16 22 Cl -0.07 -2.02 26.72 -2.72 -0.07 -2.09 16 23 H 0.06 2.13 7.88 -2.39 -0.02 2.12 16 24 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 3.36 5.97 -2.39 -0.01 3.34 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.33 13.75 7.62 -89.69 -0.68 13.06 16 30 H 0.07 2.63 7.79 -2.39 -0.02 2.61 16 31 H 0.03 1.36 7.33 -2.39 -0.02 1.34 16 32 H 0.15 3.66 8.04 -2.91 -0.02 3.64 16 33 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -57.89 305.33 3.45 -54.44 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.43 Total: 15.17 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 2.91 Total: -28.71 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -2.62 Total: -81.75 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.07 Total: -2.09 kcal Total: -57.89 3.45 -54.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.525 kcal (2) G-P(sol) polarization free energy of solvation -57.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds