Wall clock time and date at job start Mon Mar 30 2020 01:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46612 * 2 1 4 4 H 1.09007 * 109.46866 * 185.17797 * 3 2 1 5 5 C 1.50691 * 109.47352 * 305.17960 * 3 2 1 6 6 H 1.08001 * 120.00211 * 119.99889 * 5 3 2 7 7 C 1.37879 * 120.00134 * 299.99837 * 5 3 2 8 8 N 1.31512 * 120.00047 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99880 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47220 * 60.00253 * 9 7 5 11 11 H 1.48501 * 109.46962 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47108 * 300.00209 * 9 7 5 13 13 N 1.46904 * 109.47047 * 65.18293 * 3 2 1 14 14 C 1.46898 * 111.00055 * 86.03052 * 13 3 2 15 15 C 1.50698 * 109.46933 * 174.69570 * 14 13 3 16 16 C 1.38204 * 119.99750 * 259.72308 * 15 14 13 17 17 C 1.38436 * 119.99169 * 179.79038 * 16 15 14 18 18 F 1.35097 * 120.01705 * 180.21174 * 17 16 15 19 19 C 1.38483 * 119.97319 * 0.48776 * 17 16 15 20 20 C 1.38173 * 119.98522 * 359.74610 * 19 17 16 21 21 C 1.38338 * 119.99477 * 80.00365 * 15 14 13 22 22 Cl 1.73609 * 119.98323 * 359.97438 * 21 15 14 23 23 H 1.09000 * 109.47362 * 54.87294 * 1 2 3 24 24 H 1.09005 * 109.46880 * 174.86894 * 1 2 3 25 25 H 1.08997 * 109.47739 * 294.86827 * 1 2 3 26 26 H 1.08996 * 109.47313 * 240.00563 * 2 1 3 27 27 H 1.08995 * 109.47039 * 119.99853 * 2 1 3 28 28 H 0.96999 * 120.00202 * 179.97438 * 8 7 5 29 29 H 1.00899 * 110.99735 * 322.07795 * 13 3 2 30 30 H 1.08998 * 109.47149 * 294.69337 * 14 13 3 31 31 H 1.08996 * 109.47150 * 54.69715 * 14 13 3 32 32 H 1.08003 * 120.00412 * 359.97438 * 16 15 14 33 33 H 1.07998 * 120.00530 * 179.72038 * 19 17 16 34 34 H 1.07996 * 119.99093 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1260 1.4440 -0.0928 5 6 1.4355 2.1890 -1.1612 6 1 0.8264 3.0629 -0.9833 7 6 1.6603 1.7564 -2.4509 8 7 2.4017 0.6920 -2.6677 9 14 0.9105 2.6813 -3.8903 10 1 1.4048 4.0816 -3.8904 11 1 1.2993 2.0185 -5.1611 12 1 -0.5691 2.6787 -3.7637 13 7 1.6550 2.0980 1.2571 14 6 2.6455 1.8391 2.3106 15 6 2.2871 2.6300 3.5423 16 6 2.9436 3.8145 3.8181 17 6 2.6113 4.5431 4.9473 18 9 3.2497 5.7032 5.2151 19 6 1.6282 4.0795 5.8053 20 6 0.9759 2.8926 5.5312 21 6 1.3052 2.1673 4.3998 22 17 0.4856 0.6759 4.0563 23 1 -0.3634 0.5913 -0.8405 24 1 -0.3633 -1.0236 -0.0919 25 1 -0.3634 0.4321 0.9323 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.5595 0.3874 -3.5750 29 1 0.7333 1.8085 1.5483 30 1 2.6512 0.7758 2.5505 31 1 3.6337 2.1382 1.9615 32 1 3.7136 4.1731 3.1511 33 1 1.3717 4.6452 6.6888 34 1 0.2095 2.5308 6.2005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566429123.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:21 Heat of formation + Delta-G solvation = -36.278426 kcal Electronic energy + Delta-G solvation = -18437.145685 eV Core-core repulsion = 15309.828568 eV Total energy + Delta-G solvation = -3127.317117 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.95065 -39.35318 -36.47904 -36.33613 -33.26031 -31.50065 -30.43763 -29.61078 -26.62307 -24.60376 -23.19750 -22.88241 -21.36717 -19.31717 -17.42430 -16.70917 -16.57596 -16.02563 -15.67464 -14.84484 -14.78826 -14.18341 -13.77229 -13.65690 -13.25308 -13.06573 -12.66248 -12.44640 -12.20848 -11.94447 -11.60611 -11.37404 -11.17468 -10.91891 -10.82583 -10.58047 -10.51376 -9.97473 -9.85417 -9.56317 -9.08570 -8.97916 -8.52829 -8.33821 -7.26649 -5.97234 -3.98782 0.93894 1.09632 2.16646 3.34975 3.38814 3.39256 3.43262 4.13501 4.44942 4.58171 4.69279 5.00409 5.17571 5.34414 5.50564 5.60411 5.69570 5.75279 5.96729 6.03690 6.15411 6.35843 6.38208 6.43995 6.58384 6.69154 6.92025 7.24568 7.27469 7.52676 7.69646 7.87997 8.26233 8.50676 8.59137 9.06271 9.64664 11.09694 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021808 B = 0.005320 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.645955 B = 5261.583402 C = 6097.513791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.144 4.144 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.088 3.912 15 C -0.024 4.024 16 C -0.126 4.126 17 C 0.102 3.898 18 F -0.139 7.139 19 C -0.153 4.153 20 C -0.083 4.083 21 C -0.047 4.047 22 Cl -0.059 7.059 23 H 0.069 0.931 24 H 0.023 0.977 25 H 0.027 0.973 26 H 0.093 0.907 27 H 0.011 0.989 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 2.252 15.770 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.184 4.184 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.308 5.308 14 C -0.042 4.042 15 C -0.025 4.025 16 C -0.146 4.146 17 C 0.082 3.918 18 F -0.117 7.117 19 C -0.173 4.173 20 C -0.102 4.102 21 C -0.074 4.074 22 Cl -0.030 7.030 23 H 0.088 0.912 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.111 0.889 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.933 2.653 15.392 15.647 hybrid contribution -0.559 -0.412 -0.576 0.902 sum -1.491 2.240 14.816 15.058 Atomic orbital electron populations 1.21599 0.97705 0.98652 1.00811 1.22090 0.95035 1.00983 1.00271 1.19243 0.96037 0.88690 0.85133 0.94853 1.21008 1.30641 1.11543 0.89596 0.92061 1.24897 0.95527 0.95155 0.98679 1.69868 1.38967 1.23921 1.20797 0.86629 0.79576 0.79988 0.81604 1.20349 1.21518 1.20387 1.60934 1.03729 1.63180 1.02961 1.20975 0.98380 0.95966 0.88849 1.19831 0.92895 0.94318 0.95473 1.21042 1.02318 0.94578 0.96658 1.17736 0.94477 0.83503 0.96070 1.91501 1.80455 1.46027 1.93724 1.20982 0.97665 0.97713 1.00913 1.20819 0.99668 0.93761 0.95944 1.20910 0.98068 0.91038 0.97420 1.98386 1.77616 1.32082 1.94879 0.91247 0.95828 0.95353 0.88884 0.97011 0.93055 0.85005 0.94094 0.90142 0.83652 0.84232 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.40 37.16 0.35 -2.44 16 2 C -0.14 -3.33 5.51 -26.73 -0.15 -3.48 16 3 C 0.22 5.22 2.33 -68.86 -0.16 5.06 16 4 H 0.03 0.88 7.70 -51.92 -0.40 0.48 16 5 C -0.49 -13.05 7.25 -34.44 -0.25 -13.30 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.57 5.28 -17.82 -0.09 1.47 16 8 N -0.90 -24.95 11.38 55.43 0.63 -24.32 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -14.01 6.19 -109.22 -0.68 -14.69 16 14 C 0.09 1.53 5.08 -4.98 -0.03 1.50 16 15 C -0.02 -0.36 5.44 -104.60 -0.57 -0.92 16 16 C -0.13 -1.76 9.65 -39.52 -0.38 -2.14 16 17 C 0.10 1.30 7.30 -39.42 -0.29 1.01 16 18 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 19 C -0.15 -1.68 10.03 -39.52 -0.40 -2.07 16 20 C -0.08 -0.94 9.83 -39.56 -0.39 -1.32 16 21 C -0.05 -0.64 6.31 -39.50 -0.25 -0.89 16 22 Cl -0.06 -0.82 26.74 -51.86 -1.39 -2.20 16 23 H 0.07 1.63 6.85 -51.93 -0.36 1.27 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.55 6.63 -51.93 -0.34 0.21 16 26 H 0.09 2.41 6.23 -51.93 -0.32 2.09 16 27 H 0.01 0.24 7.51 -51.93 -0.39 -0.15 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.33 6.71 5.88 -39.29 -0.23 6.48 16 30 H 0.04 0.71 6.76 -51.93 -0.35 0.36 16 31 H 0.08 1.39 7.78 -51.93 -0.40 0.99 16 32 H 0.15 1.92 8.03 -52.48 -0.42 1.50 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 299.61 15.07 4.52 4.52 Total: -1.00 -27.34 299.61 -8.53 -35.88 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.03 Total: 3.90 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -2.60 Total: -17.53 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: -0.05 Total: -39.00 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.39 Total: -2.20 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.34 -8.53 -35.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429123.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.401 kcal (2) G-P(sol) polarization free energy of solvation -27.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds