Wall clock time and date at job start Mon Mar 30 2020 00:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46869 * 22.75539 * 3 2 1 5 5 C 1.36957 * 120.00284 * 264.69694 * 4 3 2 6 6 H 1.07995 * 120.00617 * 190.00999 * 5 4 3 7 7 C 1.38963 * 119.99481 * 10.01361 * 5 4 3 8 8 N 1.31420 * 120.00387 * 30.57707 * 7 5 4 9 9 Si 1.86799 * 119.99607 * 210.57927 * 7 5 4 10 10 H 1.48502 * 109.47439 * 94.99466 * 9 7 5 11 11 H 1.48502 * 109.47207 * 214.99793 * 9 7 5 12 12 H 1.48503 * 109.47458 * 334.99192 * 9 7 5 13 13 C 1.34779 * 120.00104 * 84.70386 * 4 3 2 14 14 O 1.21735 * 120.00096 * 4.58813 * 13 4 3 15 15 C 1.46580 * 120.00085 * 184.59209 * 13 4 3 16 16 C 1.40391 * 126.57160 * 310.00300 * 15 13 4 17 17 N 1.30986 * 108.77873 * 180.02562 * 16 15 13 18 18 N 1.39904 * 109.58155 * 0.02562 * 17 16 15 19 19 N 1.40017 * 132.51185 * 180.02562 * 18 17 16 20 20 C 1.30845 * 120.65964 * 179.97438 * 19 18 17 21 21 C 1.39721 * 120.97098 * 0.25417 * 20 19 18 22 22 C 1.36600 * 119.93813 * 359.48663 * 21 20 19 23 23 C 1.36778 * 107.88275 * 359.97438 * 18 17 16 24 24 H 1.08991 * 109.47328 * 262.75777 * 3 2 1 25 25 H 1.09000 * 109.47091 * 142.75082 * 3 2 1 26 26 H 0.97005 * 120.00308 * 180.02562 * 8 7 5 27 27 H 1.07998 * 125.60870 * 0.05834 * 16 15 13 28 28 H 1.07998 * 119.51745 * 179.97438 * 20 19 18 29 29 H 1.08000 * 120.03195 * 179.74545 * 21 20 19 30 30 H 1.08001 * 120.44744 * 180.26927 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2728 -0.5343 5 6 3.4289 -2.2912 0.3192 6 1 3.9384 -3.1662 -0.0565 7 6 3.1102 -2.1986 1.6686 8 7 2.0450 -1.5288 2.0478 9 14 4.1959 -3.0262 2.9436 10 1 5.1766 -2.0439 3.4714 11 1 3.3540 -3.5324 4.0572 12 1 4.9203 -4.1604 2.3158 13 6 3.2200 -1.4423 -1.8657 14 8 3.0052 -0.5114 -2.6202 15 6 3.6123 -2.7475 -2.4052 16 6 4.7029 -3.5295 -1.9929 17 7 4.7294 -4.6266 -2.7080 18 7 3.6668 -4.6189 -3.6180 19 7 3.2489 -5.5334 -4.5925 20 6 2.1977 -5.2871 -5.3316 21 6 1.4683 -4.1060 -5.1734 22 6 1.8443 -3.1938 -4.2286 23 6 2.9678 -3.4571 -3.4377 24 1 2.9713 0.1304 1.0194 25 1 2.9710 0.8188 -0.6220 26 1 1.8227 -1.4638 2.9898 27 1 5.4042 -3.2696 -1.2138 28 1 1.8920 -6.0052 -6.0781 29 1 0.6054 -3.9163 -5.7945 30 1 1.2839 -2.2802 -4.0963 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574472921.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:44 Heat of formation + Delta-G solvation = 135.363997 kcal Electronic energy + Delta-G solvation = -19989.056603 eV Core-core repulsion = 16787.994928 eV Total energy + Delta-G solvation = -3201.061675 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.77999 -40.42594 -38.73962 -37.43136 -36.35498 -34.17826 -33.56262 -32.19850 -30.98668 -28.95589 -26.78843 -25.67636 -24.38401 -23.14892 -21.02998 -19.90092 -19.13245 -18.38103 -17.99062 -17.47381 -16.89972 -16.72248 -16.31817 -16.08298 -15.33258 -15.08347 -14.89693 -14.49054 -14.30841 -13.83744 -13.63090 -13.48880 -13.32232 -13.20589 -12.93878 -12.42827 -12.28080 -12.12951 -12.00357 -11.84609 -11.44450 -11.14662 -10.66591 -10.55504 -10.01445 -9.04423 -8.44580 -5.86635 -0.68061 0.08131 0.46462 1.21407 1.49477 1.57802 1.65096 1.74417 2.04646 2.19376 2.32419 2.37853 2.98426 3.02516 3.35196 3.46281 3.58610 3.65280 3.73871 4.10099 4.31122 4.43447 4.50378 4.70403 4.83083 4.86582 5.01305 5.22056 5.33657 5.51585 5.59375 6.31026 6.34366 6.48271 6.92003 7.06144 7.43111 7.83612 8.61209 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018750 B = 0.007246 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.943121 B = 3863.249444 C = 4760.811209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.260 3.740 3 C 0.226 3.774 4 N -0.432 5.432 5 C -0.365 4.365 6 H 0.120 0.880 7 C 0.013 3.987 8 N -0.879 5.879 9 Si 0.977 3.023 10 H -0.262 1.262 11 H -0.296 1.296 12 H -0.261 1.261 13 C 0.531 3.469 14 O -0.622 6.622 15 C -0.247 4.247 16 C 0.100 3.900 17 N -0.291 5.291 18 N -0.193 5.193 19 N -0.257 5.257 20 C 0.132 3.868 21 C -0.130 4.130 22 C -0.061 4.061 23 C 0.069 3.931 24 H 0.133 0.867 25 H 0.116 0.884 26 H 0.276 0.724 27 H 0.227 0.773 28 H 0.265 0.735 29 H 0.208 0.792 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -4.965 -9.548 10.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.057 4.057 3 C 0.100 3.900 4 N -0.149 5.149 5 C -0.491 4.491 6 H 0.137 0.863 7 C -0.192 4.192 8 N -0.516 5.516 9 Si 0.801 3.199 10 H -0.186 1.186 11 H -0.222 1.222 12 H -0.185 1.185 13 C 0.321 3.679 14 O -0.511 6.511 15 C -0.263 4.263 16 C -0.079 4.079 17 N -0.117 5.117 18 N -0.060 5.060 19 N -0.069 5.069 20 C -0.060 4.060 21 C -0.155 4.155 22 C -0.088 4.088 23 C -0.056 4.056 24 H 0.151 0.849 25 H 0.133 0.867 26 H 0.086 0.914 27 H 0.243 0.757 28 H 0.280 0.720 29 H 0.225 0.775 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.499 -6.328 -9.741 11.712 hybrid contribution -0.361 1.104 1.300 1.744 sum 1.138 -5.224 -8.441 9.992 Atomic orbital electron populations 1.80843 1.14615 1.10566 1.12866 1.29798 0.95872 0.90691 0.89372 1.18857 0.80081 0.87903 1.03188 1.43717 1.54737 1.12181 1.04272 1.20195 1.38403 1.01662 0.88821 0.86313 1.25921 0.95464 0.98042 0.99771 1.70172 1.20682 1.42314 1.18394 0.85159 0.78493 0.79019 0.77260 1.18642 1.22234 1.18528 1.17069 0.82349 0.86676 0.81829 1.90639 1.58795 1.42958 1.58661 1.19803 1.02868 0.99960 1.03692 1.24567 0.97267 0.89053 0.96974 1.77440 1.05616 1.23097 1.05533 1.50914 1.19376 1.11555 1.24112 1.75758 1.18232 1.12916 1.00036 1.25307 0.87648 0.98010 0.95007 1.22232 1.02639 0.92427 0.98164 1.21164 0.92674 1.01700 0.93294 1.20017 0.96811 0.90064 0.98755 0.84938 0.86667 0.91410 0.75665 0.71977 0.77488 0.83143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.57 18.54 20.01 0.37 -25.20 16 2 C 0.26 12.33 13.96 89.44 1.25 13.58 16 3 C 0.23 9.61 5.12 84.58 0.43 10.04 16 4 N -0.43 -19.75 2.60 -650.03 -1.69 -21.44 16 5 C -0.36 -16.65 8.98 84.07 0.76 -15.89 16 6 H 0.12 5.25 4.51 -2.91 -0.01 5.23 16 7 C 0.01 0.58 4.70 84.93 0.40 0.98 16 8 N -0.88 -42.27 9.85 21.67 0.21 -42.06 16 9 Si 0.98 36.21 29.65 68.60 2.03 38.24 16 10 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 11 H -0.30 -11.45 7.11 99.48 0.71 -10.75 16 12 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 13 C 0.53 24.54 7.43 86.42 0.64 25.19 16 14 O -0.62 -30.80 16.75 -4.46 -0.07 -30.87 16 15 C -0.25 -10.52 5.31 -19.93 -0.11 -10.63 16 16 C 0.10 3.88 9.71 85.34 0.83 4.71 16 17 N -0.29 -11.58 12.61 -56.60 -0.71 -12.30 16 18 N -0.19 -7.26 5.25 -51.26 -0.27 -7.53 16 19 N -0.26 -7.52 11.96 -57.12 -0.68 -8.21 16 20 C 0.13 2.25 11.28 85.20 0.96 3.22 16 21 C -0.13 -2.31 10.04 22.25 0.22 -2.09 16 22 C -0.06 -1.82 10.09 22.29 0.22 -1.60 16 23 C 0.07 2.67 6.87 39.42 0.27 2.94 16 24 H 0.13 5.46 6.22 -2.39 -0.01 5.44 16 25 H 0.12 4.38 7.52 -2.39 -0.02 4.36 16 26 H 0.28 12.76 8.31 -92.70 -0.77 11.99 16 27 H 0.23 7.46 7.31 -2.91 -0.02 7.43 16 28 H 0.26 0.92 8.06 -2.91 -0.02 0.90 16 29 H 0.21 1.45 8.06 -2.91 -0.02 1.42 16 30 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -71.79 280.07 6.28 -65.50 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.21 Total: 13.40 kcal Atomic # 6 Polarization: 24.57 SS G_CDS: 5.88 Total: 30.45 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -2.77 Total: -116.73 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.07 Total: -30.87 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Total: -71.79 6.28 -65.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574472921.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.867 kcal (2) G-P(sol) polarization free energy of solvation -71.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds